Array 1 36784-37891 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLLM01000017.1 Pseudomonas aeruginosa strain WH-SGI-V-07062 WH-SGI-V-07062_contig24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 36784 28 100.0 32 ............................ ATTGGGCCAGTTACTCCAGCGCCGGGCGGCTC 36844 28 100.0 32 ............................ TGGTCCTGGTCCTGGGCGCTGTCGCTGCATCC 36904 28 100.0 32 ............................ GTAGTTAATCGTGTAATTAGTTTCCGTAGTAG 36964 28 100.0 32 ............................ CAGGTGCCGGTGCTCGGTCACGAACTTGGCCC 37024 28 100.0 32 ............................ AATGCGACGGCGAATATCGCCCTGCAATGGAT 37084 28 100.0 32 ............................ TGATCAAGATTCGCGTCGATGGCTGCAAGCTC 37144 28 100.0 32 ............................ CTTGACCTGCCGGGACTCCCAAGGGGCTGGGG 37204 28 100.0 32 ............................ TGCGCGAGTCCAAAGGCGATCCTGTTGGTAGC 37264 28 100.0 32 ............................ TCGCGGACTGGGATGAAATGCGTAAAGAGCGC 37324 28 100.0 32 ............................ TTTGCCAGAGCAAGGGCGTGCTCACGGCTGTT 37384 28 100.0 32 ............................ ACCCAGCAGCAGGCATTCATCCAGGCCGTGAA 37444 28 100.0 32 ............................ AGGTCTCAGCAGAGGCTAAAACGGCCGGCATC 37504 28 100.0 32 ............................ ACGCGATGGCGGAGACGGCCTGCTTTCAAGCT 37564 28 100.0 32 ............................ ATGTAGGCCGACTGCATGTTGGTCTGGTAGAT 37624 28 100.0 32 ............................ TGGGTGCGTCCACGCAGCAACTGGAAGATCTC 37684 28 100.0 32 ............................ ACGTCTGAAACGACTTCACCGGGACGAAGCGG 37744 28 100.0 32 ............................ TTACCTTTAAAAGGCTTTAAAAGGCCTTTTAG 37804 28 92.9 32 .....................A..A... TGTCTCGAAGTTCATAAGCGGGCTTAGGGCGA 37864 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 19 28 98.3 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCATGAAGGTCGTCCGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 48969-46419 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLLM01000017.1 Pseudomonas aeruginosa strain WH-SGI-V-07062 WH-SGI-V-07062_contig24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 48968 28 100.0 32 ............................ ACCTTGTTGACCGCCCAGCGGGCGAAGTTCGG 48908 28 100.0 32 ............................ ACCGGCAAGGGCACCGGCAGTCAGGCGTTCAT 48848 28 100.0 32 ............................ ATCGGGCAATCTCCGAGCATCTGGCCATCCCG 48788 28 100.0 32 ............................ AGGAACTGCGGAACCGGAAGCGCATTGATCAA 48728 28 100.0 32 ............................ CTCCAGAAGCATCGCGCACGTCTTCGCCAGAT 48668 28 100.0 32 ............................ ATCAGAGTTCGTCTTATTGCTGGTCGTACTGG 48608 28 100.0 32 ............................ TTGATCGCCGGATGATCCGCCTTGAACTCACG 48548 28 100.0 32 ............................ TATGACCGGAGGCTGTTTCAGTGGGTGCAACG 48488 28 100.0 32 ............................ TGAAACAGCCTCAGCTCGGGAGGGAGGGACAG 48428 28 100.0 32 ............................ AGGAACTCATCACGTGACGACAGACAGAACGG 48368 28 100.0 32 ............................ CTGGAGCGACCGTCAAAGGGGTTAATCGAGAA 48308 28 100.0 33 ............................ CAGTTCTGGCCGCCTGACCGGCAGCCGCTGTCT 48247 28 100.0 32 ............................ GGCTTGTCAGCGCTTGCGGTGACAAACGGAGT 48187 28 100.0 32 ............................ TACCGCATGGTTGAAGAATAAGCGTGACGTCA 48127 28 100.0 32 ............................ TCCAGCGACGTAATGACGCGCTCCAGGAAGGC 48067 28 100.0 32 ............................ ATGAAGCGAATCGACGATGACAAAGTGCTGGC 48007 28 100.0 32 ............................ GATCCCGCTGAGCCGCCATCAGACCCCAAGGA 47947 28 100.0 32 ............................ TTGGCGATCAACTGATCAGCGATAGTGTTGTA 47887 28 100.0 32 ............................ TGAATATCGCTCAACCCTATGACGTCACTCGC 47827 28 100.0 32 ............................ GATGACGGCACGAAGTCCAGCATGGTCGGCAA 47767 28 100.0 32 ............................ GGCATCGACTCGCCGGACCTGCTGAGCCGGCT 47707 28 100.0 32 ............................ TTATGGAGCAAGCCATTTCATCAACCATGAAG 47647 28 100.0 32 ............................ TATATCCGGGCGCTCAGCACCCAGCGATATGG 47587 28 100.0 33 ............................ AGCGATCTCAAGGCCGGAGCCGAGCGCCAGCGT 47526 28 100.0 32 ............................ AGTTCCAAGTCGCCTCGGCGCACTGCAAGCAG 47466 28 100.0 32 ............................ ACCTTTCCTTTTGCCGGCAGCAGTCCAATCGA 47406 28 100.0 32 ............................ ACGCCTCATCCATCCAGTAGATGAAGCGCCGG 47346 28 100.0 32 ............................ CGTTTGGCACGGACAAGGTTCCGGGCTTTGAC 47286 28 100.0 32 ............................ ATGCAGAGGGTAGCTACTGCACGAAATTTCGA 47226 28 100.0 32 ............................ ACCTGGGGAATGTCGAACGGGAAATCCTGATA 47166 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 47106 28 100.0 32 ............................ AGTCCGTCAGTTGACCCGGCGACGGCGATTGA 47046 28 100.0 32 ............................ ACCAGATCGGGAACCCTGGGCGACATATCACC 46986 28 100.0 32 ............................ ATGAGCTGCCCCCTTATGCGCCAGTGCCGGTG 46926 28 100.0 32 ............................ TGTGATCGCCGCTACCTCCATCATAGAGAAGC 46866 28 100.0 32 ............................ AAGTTCCGGGAAGCGGTCGAGCCGAAAGCTAT 46806 28 100.0 32 ............................ ACGAAGTAGAAGCTGTCCGGCTCCAGCGTACC 46746 28 100.0 32 ............................ TGGTTCAGGATGCGAGCGCGGACCCGACAGTT 46686 28 100.0 32 ............................ AGGATGAACAGGTACAGCAGTCCGCCGAAGAG 46626 28 100.0 32 ............................ GCGATCCACGGCATCAGCCACGAACAGGCGAT 46566 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 46506 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 46446 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 43 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAGTTTCTACCCCACCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGGCAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGTCGATCCTTCACTCCAAACGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACTTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //