Array 1 107637-106160 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXUW01000008.1 Salmonella enterica strain BCW_3056 NODE_8_length_170621_cov_2.1712, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107636 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 107575 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 107514 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 107453 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107391 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107330 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 107269 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107208 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107147 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107086 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107025 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 106964 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 106903 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 106842 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 106781 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 106720 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106658 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106555 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106494 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106433 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106372 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106311 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106250 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106189 29 96.6 0 A............................ | A [106162] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125750-123769 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXUW01000008.1 Salmonella enterica strain BCW_3056 NODE_8_length_170621_cov_2.1712, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125749 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 125688 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 125627 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 125566 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 125505 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 125444 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 125383 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 125322 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 125261 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 125200 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 125139 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 125078 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 125017 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 124956 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 124895 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 124834 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 124773 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124712 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124651 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124590 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 124529 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 124468 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 124407 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 124346 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124284 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124223 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 124162 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 124101 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 124040 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 123979 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 123918 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 123857 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 123796 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //