Array 1 18845-15312 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAROK010000005.1 Listeria booriae strain FSL L7-1834 NODE_5_length_269988_cov_29.088266, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 18844 36 100.0 30 .................................... AAGTTGCAACAGATGGCGTGTCAGCCAATC 18778 36 100.0 30 .................................... ATTTTCATTTAGAAATGTACCCACGTCAGA 18712 36 100.0 30 .................................... ACTGCGGGAATAACATTTTGAGCGCTATGA 18646 36 100.0 30 .................................... CTTTTACATGGGACGATAATTCTACGGCAG 18580 36 100.0 30 .................................... TATATAATATTTTAGGAGTGGCTAGGATGA 18514 36 100.0 30 .................................... TTCCTATTTCTAACAAAGTTAATAGTACAA 18448 36 100.0 30 .................................... GTAATGTTGAGTGTTGGAGTATTAGTATCA 18382 36 100.0 30 .................................... AGGTTTATCAGCAGAAAGCGGACTTGCTAA 18316 36 100.0 30 .................................... TATGCGTATATCAGATATAACTTTATTATT 18250 36 100.0 30 .................................... TTGATTATGCTAAGAGAGAATCAAAGGAGA 18184 36 100.0 30 .................................... TGCTTATGTAGAAGGTATTAATCCTTCATG 18118 36 100.0 30 .................................... AGCCACCACCCACACACCACACTCATCCTT 18052 36 100.0 29 .................................... GAATCATCACGAAAAAATGTTACCCGTAT 17987 36 100.0 30 .................................... GTTGTGTTACAATAAGTAGATTTATGTATA 17921 36 100.0 30 .................................... CTAATCCATTGATTGGAATTGATATAAGTG 17855 36 100.0 29 .................................... TCGTCGACCTCATTCTGCATCATAATCTA 17790 36 100.0 30 .................................... TTGAACGAGCATTCATGTACTTAAACGATA 17724 36 100.0 30 .................................... ACAACACGCCTGTAGCTTGTTTTATCGCTG 17658 36 100.0 30 .................................... AAAAACTAAAAAGAAACAAGGTGATTACAG 17592 36 100.0 30 .................................... GCCTGAGTTACTCATTATGTCCTTAGCGGT 17526 36 100.0 30 .................................... CCGAATATGCCAATTTGTAACGAATAGTCG 17460 36 100.0 30 .................................... TGAATTAAAGCGAGTATACCAATCCTGTTT 17394 36 100.0 30 .................................... TATTTATAGCCGATAAACTGCTTAAAGAGC 17328 36 100.0 30 .................................... GCATTTCAAACAAATTTGCAATTTCAGCCA 17262 36 100.0 30 .................................... TGTGCAAACAATGACTCCATACATAGCATA 17196 36 100.0 30 .................................... AGGTCATACAGGTAGTTATGGAAAATCAAC 17130 36 100.0 30 .................................... CGCTCGTTTTGGCCGCATCCGCTTTTGCTT 17064 36 100.0 30 .................................... CAGCAAATGGACAGAATACAGGTCTTAATC 16998 36 100.0 30 .................................... CAGAGCCTCACCTTTCTTACCTAATCTTCT 16932 36 100.0 30 .................................... CTAATGATTGGCAAGATGTAACTTTAGTAG 16866 36 100.0 30 .................................... AAATAAACTCACCCTTGAACGTATCTAAGA 16800 36 100.0 30 .................................... AACTACTAATGTTTTTAGACTACATTACAA 16734 36 100.0 30 .................................... CGTACATTTCATTTAGAACTTGAAGTTCTA 16668 36 100.0 30 .................................... TTATCATATTCATCAAATATAATATTCTCT 16602 36 100.0 30 .................................... ATTTTGAAAATGAAGAAGAATGCCCTGAAG 16536 36 100.0 30 .................................... TCAGAACGAGATTTAAAAGGCTTGTTTTCA 16470 36 100.0 30 .................................... ACGTAGCGGTAGCGAACGGGATTTTGAACA 16404 36 100.0 30 .................................... TACTAGAAGATGTTCTGGACAAAAAAATTG 16338 36 100.0 30 .................................... ACTGTTCCAATGCCCTTCATCGTCGAACTG 16272 36 100.0 30 .................................... AACAAAACGTTCATGGATTTACACGAACAA 16206 36 100.0 30 .................................... CTTTTTCACACATAAAATTCCGGTTCCATA 16140 36 100.0 30 .................................... AAGCAGAAGCCAAAGATATGATTTCCTACT 16074 36 100.0 30 .................................... ATGGTTACTATAATAACAGCCTTCCTGTTT 16008 36 100.0 30 .................................... AAACTGTTTCGTCTCCACCCTCTGGATGTG 15942 36 100.0 30 .................................... CTTCCTCACTGTAGTTTGTTTCTGACATGT 15876 36 100.0 30 .................................... AAAAGTGCGGGTCTTAAGATTACTGTATCA 15810 36 100.0 30 .................................... ATGCCAAGTACATCATGTACGATGAAGCCG 15744 36 100.0 30 .................................... AGATAGGTCGTTACATCAGCATCACTAAAA 15678 36 100.0 30 .................................... TGTATTTGTAGTTGAACATCGCAAATACCA 15612 36 100.0 30 .................................... ATAGATCAGTAATTACAGACTCAAATATGA 15546 36 100.0 30 .................................... TTCTCATTGCGAATAAACTATCAACTAGTG 15480 36 100.0 30 .................................... ATTTTTAAAATTAAATTTACTTATCAATGA 15414 36 100.0 30 .................................... TTATCATAGGCACCCTCAGACAATTTGCTG 15348 36 80.6 0 .......................AAA.G.....CCA | C [15316] ========== ====== ====== ====== ==================================== ============================== ================== 54 36 99.6 30 ATTTTGGTACTCTCTTAATTTTTGGTATTAGGAAAC # Left flank : ATATTATAAAACTAATACTGGGTATGAGTATAACAAAACCAACCCTTGTGTTGGTGGAGGGGTTTAGGTCTGGTCTGAATGATATAGAATGTGCAAATGCAGAAAGAATGTTACAGGAAATGGCTAGAAGAGGTATGCATGTCATTGTACTTGACGATAATTTGGTAGGTGCTTCTGTAAATTACTATTACCAAGATTTGATTGTAAATAAATTAGAAATATTGGGTGTTAAAAAGATTATTCTAGAATCCAGCCCTATCTTGAGTAACTCTGAAGACTTTCTGCAAGCTATAAATTGGTCTATAGAGGCTGTGGATAAGTCCAAGGGGAAAGTAGTGGAATTGGAGCTACAGTCTGTGGATAACTTATGTATTTTTACATTGATCTATTTAATTTTCACATTTTTAAAATGGCCACTAATTGTTGATTTTAGAGGGGTTAGGAGTGATTTGATAGAATATCTTGCAGAGATTGTGAGTGGTGAGGTATAATTAGGAGGT # Right flank : TGGGCTAAAGAGCAACATAAGAATTTCATAATGTGTTGCAGGTAATTGCCACAAATGTAAAGGCATATGTTAAACTATTTATTAAAACAAGCAACAGTCGGAGGCGTATATATGCTTTTTTTAGACAAAACAATCGAACTAAACGATACAGAAATGACGATTTACCACTATGTAGTCGGCAATTTGGACACGGTTATTTACATGCGGATTCGGGATTTAGCCGATGCCACCCATGTTAGCACAACGACAATTTTACGATTTTGCCGGAAGTTTGGGTGTAACGGTTTTTCCGAGTTTCGTGTAAAGCTGCAAATGTACGCGCAGAATCGGACGAAAATAAGTGTGGATATGTCGGATGAGACAACGTATATTGATTTTCTGAAACGCACAGCTCAGCCTGAATTCAAGGCGAATATTGCCCAGTCTGCGAAAATTTTACGCGATGCGGAGTTGGTTTTATTTGTTGGCATCGGGGCGTCCGGAATTATCGCTGAATATGG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTGGTACTCTCTTAATTTTTGGTATTAGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 222588-222221 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAROK010000003.1 Listeria booriae strain FSL L7-1834 NODE_3_length_297891_cov_25.965512, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 222587 36 100.0 30 .................................... TAGCATCAAGAAATGTTTGCGAGAAGAATC 222521 36 100.0 30 .................................... GTGTGCTAGACGGGCTAGGAGTTGCCTATA 222455 36 100.0 30 .................................... GGAACGAAAGCAGTATCTGTGCGCTTGCTA 222389 36 100.0 30 .................................... AGTTTTTTAAAGTGGGAGGAGAATTAATAT 222323 36 100.0 30 .................................... TAAAGTTGGCGATCGCGTGCAGTCTGTCGC 222257 36 83.3 0 ..........C...............TG.A..C..A | A [222226] ========== ====== ====== ====== ==================================== ============================== ================== 6 36 97.2 30 GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAATC # Left flank : TTTTTCTTGGTGTAATACCGCTGACATTAATTCTGTTATTTCTTTGTTGATTGCTATTTTATGTTTATTTTTTTCTTTTTCGTTGAGTTTCCTCACTGTTTTGTTGAGAATACTCTTATAAAACGACTCTTTCTTTTTATCAAATATAATTTCTTCTGTCTTGTTCTCATCAATACCTTCATAAACCAACTGGCCTTCTTTACTTGTCCTCTCCATTACGATAGTTCTTCCATCAACTCTCATTTTGGTGATTTTCATTTGTCTGCTCAGCTCCATTTAGTTTTATAGTTGTATAGCTAGATGTTTCAACTTTCACATGTGTATGATATTGCTAATATTTATCAATATATTCATTATACAAGAAGGTATTACGTAAAACAACATCCATTGGCAATTATCCACTGTGCTAATAATTGAATAAAGCCATAAAAACTACTGATCCAATTCTTTGAATCACAGTTTTTATGGCTTTATTGTCGAATACTTATCCACAGAAGAGG # Right flank : TCTATTTTACTTTCAACAGTTTAACTATACCAAATTATTAGTAACTCTGCATCTTCGCGTAATCACACGTACTAAGTAACCGTATTTAGCTATAATTATGGCTTTTATAATACGAAACGTATTCATCAATCTTTAAGATACTTAACACCAAACGATTTTGAAAGAAAAGCGAATTAAATTCTATTTATTTTTGTCCAAAATATTGACACCACATCAATATCGCCAATCGTTCACTTTACTCATCTAATCATATCTAAAAAGGATAGGAAATCTTTTGCAATCCAATAAGTATTTTCTTCATCGGTTGATTCTTCAAACTGAAATGAGTCATCCCAATAATAGATACCTTCAAATTCTCCCTCGCAAATCATTACAATCATTCCTTGCATGAGATCATCGCCAATAATTATTGAACCTTCCATCATATCTTCTTTTAGTTTTTCCATCCACGTCTCTATGTTAGAGGCACTTTCCCCAGTATTAACACCATATAACACATC # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 226405-226042 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAROK010000003.1 Listeria booriae strain FSL L7-1834 NODE_3_length_297891_cov_25.965512, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================== ================== 226404 35 100.0 30 ................................... TTAAGAACGTGGGCTTTGTCGTGCTTATTT 226339 35 100.0 30 ................................... GAAGATTGAAAGAGTATGAAGATTATCTTA 226274 35 100.0 31 ................................... CATAAAACAAAAACAGCTTTTATCGTTGTTC 226208 35 100.0 31 ................................... CTGAATGTAGAAAAAGCAGGCGACCTTATCA 226142 35 100.0 31 ................................... CAAGATTTACAACAAGGTGACTACACAGCGA 226076 35 88.6 0 ...........................T.T...TA | ========== ====== ====== ====== =================================== =============================== ================== 6 35 98.1 31 GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAAT # Left flank : TTGTACAGCTATCCCCATATCAAATATCTCCGAAAAATCATCAACACTCGGCAGTTTCTTTGTACTAATAATTTCTTCACCTTGAAGTGTTATAGGTAACGCCTTGCTACCATCTTTCTTCAATAAACGAATAACCTCATCATTTTTGAGAAACGGTTCTAGCGAATCTTCCAAGTAAAAAGCATCAAGAACAATTTGCTCCTCCTTTACGAAAAGGTGGCTTTCTTGGAACTCCTTGTCAAAAATAGAATTGAATAGCTCTAGCTCTACTTCATCAGACTGTTTTAGACTGTCTCGTGAGTCGAGGAAAAAAGTAAGTTTTATCATTTTTGCACTCCTAACTGCTTTCTAAACTAAAACAGAACACACCACTGTTATAGCAAGAAAATACTGCGTCATTTACTACTGATTGGATGAGCATCCTTTGAATGCTCTATTTTCTATGGCTACTAACCTCCGATTAATTAGAAATAACTTATCCCACTTATCCACAGTAGAGG # Right flank : CTTTATTCTTTTATTAATAATTGAAATACCCTACGTCACATCTCCAATAACGCCTTCACTATACTACAATACTCTTCTGAAACTTGATTCGTTTCAATATAACTATCATTTAATTTTTTCCCACTTAAATGTCTCAATTTTTTTGGTTTTAGGCTTGCTATTACCAATCTGTGTTTATTGTTTTTCAAGTTAGCAAACACAACACACATACCATGCTTATCTAAAAGATCGATTAATGATTTAGTAACTGCGTTCTTTAATTTGCGATCATATTTAAGCATTTCTCTTAATTTCTCGAATAAATACAATAACGAATATTTATTTTTTGGTGATAAATAATTTAAATGCGCTATACGATTTCTGTCTTTTCTCTTAGAAACAAACAAGTTCTCCCCTACCATGAATTTATGAAGTTTTTCAATATGTTTTGGCCATTTTTTCCTACCTCTTTCTTTCCAATATTTTTCAGTAGTATTAATCCAGCTATCCACTCTTTCGGT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 121878-121452 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAROK010000008.1 Listeria booriae strain FSL L7-1834 NODE_8_length_136870_cov_25.220881, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 121877 30 100.0 35 .............................. TCATAAGAGCCCGCTTCTCGGTACCAGACCCCTAC 121812 30 100.0 36 .............................. TCAGCTTATTCTTTCCGTTATAAACCACGATAGCAT 121746 30 100.0 35 .............................. CTCTCATGATTGACGGGACATTGCAAGAGCTTAAA 121681 30 100.0 37 .............................. TACAAAGCATTTAACATTATTTTTGCTTTTTGCTTCT 121614 30 96.7 36 .................A............ ATGGGAACGACTATTATTCATGGCTATGTAAATGGT 121548 30 96.7 37 ............G................. AAAATAGGATGACGGTAGATCAAGGCCAAATGGTAGA 121481 30 93.3 0 ............G...........A..... | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 98.1 36 GTTTTTATCTAATTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGATATGTATATTATCCTGATTTACGACATAGCAATGGATAACGGCGGTCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAAACCACGTGCAAAAATCGGTATTCGAAGGCGAAATAACGCCAGCACTACTTGCCAAATTGCGAATGGAATTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAAGAGTTTTGGGGCGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTATGTAGAAAAATCTGTCGACCTCTAGTAGTGCAAAATAATGGGGGCATCGACAGATTTTTGTTAAGCATTGGTGTGATTGGGTTTAAGGCTTTTTTTGATGTTCGGCTTGTAAGGTTAGAGAGCGATAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGATGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : TAGGAAAAGGGCGCACTTATACACCCTGCTTTTTTCCGAAGTACTATGAAACATAACTCGGTCTGTTTAGCTACGATTGCTTTGGCAGACAATCTCAGTCTACCAAAGCAATGTTCGTAGCCAATGTACTCTACTTTCCAGCTCTCACAAAAAATCCTCACGATAATCTTTAACATACTGATCAAACGAAGTAGCCTCACGTTGCAACAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTTATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCTCGTTTTATTATGGTTGCGCGAAATCGTAATAGGGATGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGCTGTCATCTTCTCTGCCACCTCATAATACGTCAATGCTTCTTTTCCGGTAATACTATACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCGATCTCCCCAATATCACGCGTAT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAATTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 66786-67141 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAROK010000009.1 Listeria booriae strain FSL L7-1834 NODE_9_length_112809_cov_20.575693, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 66786 30 100.0 36 .............................. ACGTTTTTCACGCCTCGGCCTACACTCAAAAAAGCA 66852 30 100.0 35 .............................. ACAGATGCTATAAATCTCGAAATGGCGGATTTAAT 66917 30 100.0 35 .............................. CTTGCTGGAACGGAATATCAAATCTTAGACAGCGA 66982 30 100.0 34 .............................. TCTGGACACCCAAACACCCCATCTGTAGCATCAG 67046 30 93.3 36 AG............................ TAGTGTGCCAGTGCGCCACCTAAACTGTGTCCTGTA 67112 30 80.0 0 .................C.A...CA...TC | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 95.5 35 GTTTTTATCTAAGTAATGTGTAATGTAAAT # Left flank : GACGCTGAGCGCAACATCAGACCAGTACTTAATTCCGAGAAAATTTGGGAAGCGGACATCGTTCTAATTGCCGTCGGATTTGCAGGCACAACCAAGTCAGTATTCGAAGACTTCCAAGTGGCAAAAACAAACCGTCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGACTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTCGGGGACATCGACAGATTTTGTTTTTGCTTAGGGAGAGAATGGATTAGGATGGTTTTCGAGAGGTTGAAAAAAATAAACGAGTACAAAAAAGATAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAAGAGTTGAGAGGGTACCT # Right flank : CCCCAAAGAAGGAGAGACACCAAATGACTATGGAAAAATTAAAACTACGAGTCACCATAGACAGACCTATCGGATTTAAAGACGACTACGGAAATACATACCCAATAAACTACGGATTCGTTCCCGGTGTCATAGCCGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAGCCCCACTCGACACATTTGAAGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAGTGGGTAGTTACCTCAAAAAACGAATTATTATCCAAACAAGAGATATTCGAAAAAACGCATTTTCTAGAACAATACTTTGATTCCGTTATCGAGATTCTTTAACAAATACAACAGTATAAACGCTCACCTTCTCACAAAATACCGAAATAAAAGATGAATCACTATTAAAAACAGTACACTAACCATGAAAAAACCACTCGATACCCAGTCCATAAAAAAGGATACAAATACTAAAACTACGAGAGC # Questionable array : NO Score: 3.04 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 70389-71009 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAROK010000009.1 Listeria booriae strain FSL L7-1834 NODE_9_length_112809_cov_20.575693, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 70389 30 100.0 37 .............................. GCAGATAAAATAGTTACACAGCCATTTAAACGGCACG 70456 30 100.0 38 .............................. AGCCATCGGTTCGCCGTACAATGACTTAGATCCAGACG 70524 30 100.0 36 .............................. TCTAATTCCAAGGCTCGTTTAATTCGTTCATCTGTT 70590 30 100.0 36 .............................. ATTATACGTAGACATTACAGCGAAGGATGTTACGAA 70656 30 100.0 35 .............................. TCTGCTGTAAATCGACCTAAACGCTCTACCGTTTC 70721 30 100.0 36 .............................. AGATATGTCCTGTCAGCTCTGTATGCATTCAGTGAT 70787 30 96.7 35 ....C......................... CAAAATCTCCCTCAAAAGTGCGATAAGTTATGATT A [70797] 70853 30 96.7 35 .................A............ CCGAACAAAGTTGCTGGGGCAACACTAGTAGGGAA 70918 30 96.7 33 ................C............. GTCACTGTATCCCCTGATTTTTTTACGCGTCCA 70981 29 76.7 0 ................-.A.G...CC..CA | ========== ====== ====== ====== ============================== ====================================== ================== 10 30 96.7 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AATGTTCCACCTCGACGAAGCCAACTGGAAACTGCATAAAAAAGACATCATCAGCAATACGAAAAACTGGGAACCATTCCAAAAAGAAGCATTACAACATGAAATGAGCAGCTTTGAAGTACTAGATAAAGAACGCCTCGTTCAGAAAACAACATTTGGCGCGAACCTACAAGTCATAGCGAATTTCTCGAACAAGAATTTTGAGTACGAAAAGAAAACCATTCCTGCGAATAGCGCATTGATTTTGCAAGATGGGAAGAAAAAGATAATTTCTACAGATAATCTTGATTCGTAATAACAGGAAGAAAATCTGTCGACCTCCAGTAGTGCGAAATAATGGGGGCATCGACAGATTTTTGTTATGTGTTGGTACTAAATAGATTAAGCCTATTTTCGGAGTTTGGATTGTAAGGTTTGAGAGCGGAAATTTAGCATTTTGCTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAAGCGTTGATGGGTTACCT # Right flank : AAATAAGACATTAGTAAAACGAATTGAATAACAAGAGGGTGAATATCCATTACTACTAAACAATGGATATCCACCCTCTATTCTATTGACCTCTATGTTGAAAATTTTTAGCATGCAGTTAACAACGATTATCTACTCAAACTAACTACTTTAGTATCAAGCACGTTACCATTGATATCGTAAGCAGTGATGTGTGCGCTATCTGTCGTATTAAGGATGACCGTTTTCGCGTAATATTTAATAGCTGGTGCAGTAACAGGGATTTTAACGCCCTCTACACCATTCACAGTAAGGCTAATTTTCGCTATGTCTCCAGAGAATTGACCAGTAACATAGCCTTCTTTACCAATTACAAATGGAGCAAGTGTGGTGATAGAACCGGTTGCGACTATTTGATTTGCAAGGGTAACAGTTTTTGTGTCCAGTACTCTACCATTGGCATCATATGCAGTTAATGTGATATTGTCTGTATTTTTTAAAATCACTCGTTTTGCATAATA # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //