Array 1 83363-82602 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACAVZ010000039.1 Aggregatibacter actinomycetemcomitans strain Gm1104 593, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 83362 33 97.0 33 ................................A ATGCCTGCGCGGGTTTTGCCGAGCTTCGCCGTG 83296 33 100.0 32 ................................. AGCGCGAAAATCTTAACCGGTAGTCAATATCC 83231 33 97.0 34 ................................A TTAATACCGTATTTTTCAGGCAAACGGCAAATAC 83164 33 100.0 33 ................................. TCACACAACCACTGTGCGTCTTCCACAGGTCGT 83098 33 100.0 33 ................................. CTTTTCGAAAGATACTGCATTGCTTTTTCGCTC 83032 33 100.0 32 ................................. ATGAATAACATGTATTTTTCTATGAATTGTAA 82967 33 100.0 34 ................................. TTCATTTTTTGTAATGTCTCATCGGCGTTATAAG 82900 33 97.0 33 ................................A TTGGTTTTAATGAGCTTACAAAATACGCAACAA 82834 33 97.0 35 ................................A TTTTTTATCCCCTTATTTGCGCCTCACCGCCTCAA 82766 33 97.0 32 ................................G TTTTATACTATAATTAGTTTTCATATAAGCCC 82701 33 93.9 34 ...............................TA TAGAAGTCAATTAATACACCAGACGGTCTAGGTA 82634 33 84.8 0 .......T.........A..A....C.....T. | ========== ====== ====== ====== ================================= =================================== ================== 12 33 97.0 33 GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACT # Left flank : TTGATGAGGTGAAAAATGTTAATGTTGATTACCTATGATATTTCTTTAGAAGACCTGGAGGGACAAACCAGGTTGCGCCGTATTGCGAAGCATTGTCTGGATTATGGCGTACGGGCGCAATATTCGGTGTTTGAATGCGATGTAACGCCGGATCAATGGGTAAAATTGAAGGCTAAGCTACTGGCGACTTATGATCCGGATTGTGATAGTTTGCGATTTTATCACCTAGGCAGCAAATGGAGACGCAAAGTGGAACACCACGGGGCGAAACCGGCGGTGGATGTGTTTAAAGATGTGCTTGTTGTCTAGCTCGCTAACTCCTAGTTCTCATAAAATTCCCGTCAGGCTAGCGATCCTGATTTTCTTTAACAATTTGGAACAGTTAATTCATTTGTATAACGACGACATGCCCGTTATACTTATCCCACTCTCTATTTTGAAATAAGTTAGCGAAATACAGGAAGTAATCTACTGATTTTTCTTGTTTTTTTATATAGGGA # Right flank : ACTTGGCATGCGCTTTTTATGGACATTTAATCGGTTAAAAATATGTGAGCTTGTTGCCTAATGGTAGGGCAGCGTTTAACAAAATGCTCTGTGCGACTTCGATACTCGCCAAGCTCACGATTTATTACCCTGCACGATTTTATACAACCCTTTTTCAATCTTATTCAACATATCGGTAATTCAAAAAAACACCTTAAAAATCAACCGCACTTTTCCTTTCATAAAACAAAAGCTGAATCTCTCTAGATCCAGCTTTTTTTTATCTATTTATTACGCTAATTCCACGCGTAATTTTTTCGTTACATCCACCATCACTTTTAATGCGGCGATGGTTTCCGGCCAACCGCGGGTTTTTAAACCACAGTCCGGGTTGACCCATAGGCGTTCTTTCGGCACCACTTGTAACGCTTTGCGTAGCAAGTGTTCGATTTCCGCGGCGGTTGGTACGCGTGGGCTGTGGATGTCGTACACGCCCGGGCCAATGTCGTTCGGGTATTTGA # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 32869-33637 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACAVZ010000015.1 Aggregatibacter actinomycetemcomitans strain Gm1104 558, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 32869 33 100.0 34 ................................. AATCTCCCCTAACCCCCCTTTACCAAAGACGGGG 32936 33 97.0 36 ................................G CCTCTTATTTGGTAAACGAAGGTTACAAATTTGAAG 33005 33 100.0 35 ................................. CCAAGACGACCTCCGTTTAACGAAAATCACATGAA 33073 33 97.0 33 ................................C ATGAATAACATGGTTTTTTCTATGAATTGGAAA 33139 33 97.0 34 ................................T ATATAGTTTTTCATTTTTTTCCTCTCTTTTATTA 33206 33 100.0 33 ................................. TTTCCTTCTTTTTTCAAAATTTTATTTAATTTG 33272 33 97.0 32 ................................T GTGATGACTGTAAATGGCGCCCACGTATCGGG 33337 33 97.0 32 ................................G ACACCGACCATCCTGTCGGCAAGAACCCGGAC 33402 33 97.0 35 ................................T AGAATTGACAACAGCTCAAGGGGTGTGATTGTACA 33470 33 97.0 36 ................................T CGTTTAGAAGATAATGGATCTGAAGAAAAGCTAACA 33539 33 100.0 33 ................................. CTACCGGCACCTGGAATTGGTTAGCCAATACCC 33605 33 84.8 0 .......T..........A.C...T......T. | ========== ====== ====== ====== ================================= ==================================== ================== 12 33 97.0 34 GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA # Left flank : TGGTCAATGCCGACAATGATTTTGAACAGACTGTATTGCCCATTGGTGCGGGGGTTGCTGTTAGCCGTAAAAATAACCACTAACTGTAGATTAGGTTGTGACATTCTGTTTAGATCAACTTACAAATAGTTTCAGGTACTCCGAAAACTGATTGATTAAAAACAAAAAGTGCGGTCAAAATCCAAGGCATTTTTAAACTATACGGAAACTACAATACATTCTCTATATCGCTCCGTCAGGCACATTTTCTATTTGGGGATATTTTAGTAGTATTAACAGCGTGTTTTCAACAATGTGCTTGTTATTCAGTTCGCTAGCCCATGGTTCTCATTAAATTCGTGCTAGGCTAGCGATCCTTATTTTCTTTAACAATTTGGAACAGTTAATTCATTTGTATAACGACAGCATGCTCGTTATACTTATCCCACTCTCTATTTTGAAATAAGTTAGCGAAATGCAGTAAGTAATCTCCTGATTTTCCTTGTTTTTTCAGATAGGGA # Right flank : AGGAGTTTTGTTACATCTGAACTCTGACACCAACTAAACTAAGCACCTTATAAAAATAAGGTGCTTTTCTTTTCCCGCAAACCAACACAAAACTCCTTGCCCTTCCTCCGCAAAATATATAGACTGAGTCCCGTTATTAGTCGGGGTGCTTTGTGCTGAGATGATACCCGTGAACCTGATACAGTTAATACTGACGTAGGAAACTAACAGAGAATCATATTTCCTTTCTTTTTCTCTTCATCGTCATTATTGCTGATTATCTTTTTTTCGTTAAAAAAAGGAAAAATTATGCAATATGGTTTTTGTTGTCCGTTATTTGTAAATAACGGAGGGCGTGATGAGTAAGGTTGCGCAAGCGTTGACCATCGCCGATTCGGACAGCGGCGGCGGTGTCCGGGTTCAGGCGGATTTGAAGATGTTCCAAATGCACAGGATGTCGTTTGGTACATCGGTGGCCGCGCAAAATACCTTGAACGTGATTGATATTTACGCCGTGTCAC # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2383-974 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACAVZ010000073.1 Aggregatibacter actinomycetemcomitans strain Gm1104 635, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2382 28 100.0 32 ............................ ATCATCACGAATTTTCTCACCGATATCCGGAA 2322 28 100.0 32 ............................ CCGCGCTGGCAATCCGCGATGAACGCGATTGC 2262 28 100.0 32 ............................ TTTACCTTCTTTTTCATCATCGCCCTTACCAT 2202 28 100.0 32 ............................ AATCATCGCATAATGCTGTTTCGGCAATCCCA 2142 28 100.0 32 ............................ ATTGAGTTTGAAATGTTGGATTAATTGAAGGG 2082 28 100.0 32 ............................ CTGGCGGGTGTCGTCATCAAACCACTTTATCT 2022 28 100.0 32 ............................ TGTAGCCGTTTTAAATCGGCGTCGCGTAATTC 1962 28 100.0 32 ............................ ATATCGTGAGGATAACGGCGAGCATATAATAA 1902 28 100.0 32 ............................ TGTACAGATGACACCAAGAGCACTTATGACAG 1842 28 100.0 32 ............................ TCGAGACAGGTCCCAACATCACATGAAGTTAG 1782 28 100.0 32 ............................ TTTATACTTAAAGCGTTCATAAAAGATCCTTT 1722 28 100.0 32 ............................ GTCACCGTTGACCCATTCCATCGCCTGAACAT 1662 28 100.0 32 ............................ AATTAACCCAAGCCGAAGCCGAAAACCTACAA 1602 28 100.0 33 ............................ CTGTAGCGTTTCCGGTAAATGTCCTGCAATTCA 1541 28 100.0 32 ............................ TGCAATTCAAGTTTCATTGTTTGGTGCAACAC 1481 28 100.0 32 ............................ TGAGAAACAGTGTACCACAGGGTACATCATGA 1421 28 100.0 32 ............................ ATCTAAAGATTTAACACTTTTTAAATCCCACA 1361 28 100.0 32 ............................ ATTAAAAAACTTATTGCCCGGCTACAGAGCAA 1301 28 100.0 32 ............................ CGATAGATATGAGTGCACAATGACGGGGGTTC 1241 28 100.0 32 ............................ AAAGCGCAACATTTATCGGGCGTTTTATTCGC 1181 28 100.0 32 ............................ AGAGATTGTCAGCGGGATTACGCGCGCACCGA 1121 28 100.0 32 ............................ AGTCTGGATTTGGTAATGCCTTGATCCTCAAT 1061 28 100.0 32 ............................ AATAGCGGAATAAACCGCAGTAATGCGGTATT 1001 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 24 28 100.0 32 CTTCACTGCCGAATAGGCAGCTTAGAAA # Left flank : CGCTCGCCCGTCGTAACGATGAAAATCCGGAAGTCACAGACCGTTTTGAACTCTTCATCGGCGGACGTGAAATCGGTAACGGCTTCTCAGAATTAAACGACGCCGAAGACCAAAACGACCGTTTCGACGCACAAGTCACCGCCAAAGAAGCCGGTGATGACGAAGCGATGTTTAAAGATGAAGACTTCGTGATCGCACTCGAACACGGCTTACCACCAACAGCTGGCGAGGGCTTAGGCATCGACCGCCTGGCAATGCTCTACGCCAACGCGCCATCTATCCGTGATGTGATTTTATTCCCGGCAATGCGGCAGAAGTAGTTAGCACAACTATCAAGATAAAAGGAAGTCATTCGGCTTCCTTTTTAATTCCCCTTTATTTGCACAATAAAAAAATCCCCTTTAAAAACAGTATATTAAAAACACAATCTATAAAAAGGATTTTCACTTTAAAATACGCTAACAACTTGGTATATCAGCTATTTTCAGTTAGAATGCCTA # Right flank : ATACACGCTTTATGATACCGATTGCAAAGTGTAGTAATACACTAATCCCGCAGTCGTCAATAGGTGGAAAAATACCATCAACAAGAGGATTTTATAATGAAAAGAGCAAGACGTTTTTTCATCCCTGACTTTAAAGCTTAAGCGGTCAAATTAATTAAAGAACGCGGTTATTCGGTTTCGCAAGCTAGTCGAGAATGAGACATCGGAGAAACAGCATTGCGTCGCCGGATAAACCGGGTTGAAGCGGAGAATCAAGGTTATGTCTTACCCGGCAGCAAACCGATTTCACCCGAGCAATAACGTATTTACGAGTTGGAGAAACGCATCAAAGAATTGGAAGAAGACAAGCTCATTCTAAAAAAGGCTACCGCGATTTTAATGTCTCTCGAGCTGCAAAATACCAAGCCATCATGACGTTAAAATCGCGCGGAATCAAACGACTTTGTTCGCTGTTTGAGGTGTCTGAAAGTGCGTATTATGCCCAATGTAAAGCGGTAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTCACTGCCGAATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //