Array 1 45680-43731 **** Predicted by CRISPRDetect 2.4 *** >NZ_CHYX01000003.1 Streptococcus agalactiae strain BE-NI-005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 45679 36 100.0 30 .................................... TTGGAAAGATGGCAGAGGGGTTAACGCAGC 45613 36 100.0 30 .................................... TTTTGAGTTTTCAACTTATAGAGTGTATTT 45547 36 100.0 30 .................................... ATCTGGAAGCGGTCAAGAAAGCCCAGTATG 45481 36 100.0 30 .................................... AACTAAACAAACGCATTGTGTTTTTAGCTT 45415 36 100.0 30 .................................... CTTAAGCTTGATTATAGTATATCACCATTT 45349 36 100.0 30 .................................... CCTCTATCGAGGTTTCTTACGGGTAGGGTC 45283 36 100.0 30 .................................... GACGAATTTAGATAACAAAAAAGCCACTGT 45217 36 100.0 30 .................................... ATGGTCAGAAATCGAAGAAAACGAAGTCGT 45151 36 100.0 29 .................................... CTTATGGGAGTTCTTGCAATATTAGTTGT 45086 36 100.0 30 .................................... GTAACCCGTCTTTTCCATCAGTCCCATCTT 45020 36 100.0 30 .................................... TTGGAAAAAACACGAAAGTGATATTACTTT 44954 36 100.0 30 .................................... TAAGAATTTTAGATACTCTACTTGAATGCT 44888 36 100.0 30 .................................... AAGACTTAAAATCGATTAGAATTGATTTTA 44822 36 100.0 30 .................................... AGTAGAAACATAACGATAATTCCATGAATA 44756 36 100.0 30 .................................... ATGTTGTAGAATCATATCGACCATATAACC 44690 36 100.0 30 .................................... CAATTGATTGCCGTTAAAACCGATAGAGGA 44624 36 100.0 30 .................................... TCATATTGAGTGGTTGTTTAATTAAATTGA 44558 36 100.0 30 .................................... AGAATTCCACGCCACCAAGTAAACCTGTGA 44492 36 100.0 30 .................................... ACAAGAAACAAACAGCCTTGATGACTTAAT 44426 36 100.0 30 .................................... GGGTCCAAATCAGCAATCTATGCTAAAAAT 44360 36 100.0 30 .................................... CAACCCTATGTTTGATAATATTTTAGACGT 44294 36 100.0 30 .................................... AAGTGAAGTTGAATTTTATTTGAGATACTA 44228 36 100.0 30 .................................... TAATACTTTTACAATATGTGTTTTCACTAC 44162 36 100.0 30 .................................... AAGTGCCACAGTTTGTGGCTGATTGGATTG 44096 36 100.0 30 .................................... CATTCAAGGACTACCCTCAACAGTAACTCT 44030 36 100.0 30 .................................... ATAATATATTATATAATAAATATAGAAATA 43964 36 100.0 30 .................................... TTCTATCTTCTGAAGATATTTCACAAGTGA 43898 36 100.0 30 .................................... TCAGCGAGATGCTCTAAGTAAGCATGTTGA 43832 36 100.0 30 .................................... TCTTCTTTTTAATTCTTCTAACACTCCATC 43766 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 30 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : ACGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGA # Right flank : ATCTTCTTTTGACCTAACAAAAGGATATGTGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 81964-81404 **** Predicted by CRISPRDetect 2.4 *** >NZ_CHYX01000005.1 Streptococcus agalactiae strain BE-NI-005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 81963 32 100.0 33 ................................ TAGTCCCACATATTGCTATGAAAAAACGGAAAA 81897 32 100.0 35 ................................ TACTATATTTCCATTTATGTTCTGTCTGAAAAGAC 81830 32 100.0 34 ................................ TAAGTCTCGCTGTTACGCTTGACGCAGAGCAAAC 81764 32 100.0 34 ................................ TATTTTATATTAAAAATAAGACTACCATAATTAT 81698 32 100.0 34 ................................ AGGCAAAAGTCAACGAGCTACTCAAACAGCCAAA 81632 32 100.0 35 ................................ TAGCTGATAGCCTGCAATATACAACCATCCGTTTT 81565 32 100.0 34 ................................ ATCATATCTCTATAATTTCCTTTCATATCAACGC 81499 32 100.0 33 ................................ TAATAATGATTATTTTTTTATTAATTCATTATC 81434 31 78.1 0 A....-.............T..A.T..C..C. | ========== ====== ====== ====== ================================ =================================== ================== 9 32 97.6 34 GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Left flank : CTAAAGCAATACGTGGTGATTTGGAATCCTATCCACCATTTTTAATCTAGGAGTAAAATTATGATGGTTTTAGTAACCTATGATGTCAATACGAAGACTGTAGCAGGTAGGAGACGCCTTCGTCACGTCGCAAAACTTTGTGTTGATTATGGTCAACGTGTACAAAATTCTGTTTTTGAGTGTTCAGTGACTCCAGCTGAGTTTGTGGAGATAAAAAACGAGTTGCTGACAATCATCGACCAGAAATCAGATAGTATCCGATTTTATTTACTTGGTAAAAATTGGCAAAATCGTGTGGAAACTATTGGCAAAAATGATAGTTATGATCCTGATATAGGGGTATTACTTCTATAAACATTTATATGTGAATTCGGGTCACACATGAAAAAGCGGAGTATTCGCGCTAAAAAAAAGAAAATAGTAGTCAAAATCTAGTTTTTATTGAACCAACTTGTTTAATAAATTCTTGGTTTTAGTTATAAACGGTGCAATCGCGCACT # Right flank : ATTTTAAATCTTTCAAATTATGCTATTAAAATTGTCTAACTTTTAACAGAGATGCGATTAAATTGTATTAATCCCTAAAAAGATAAATTGCTAGTTCTTATGCTATAATAACTCTATCAATGTCAAAGGAGTTTTTATGTCAAAGGTAAGGTATGGTGTTGTGTCAACGGCAAAGGTGGCGCCTCGTTTTATTGAAGGAGTCCGCTTAGCAGGAAATGGTGAAGTTGTGGCTGTATCGAGTCGAACTCTTGAGTCTGCGCAAGCTTTTGCCAACAAATATCATCTCCCAAAGGCTTACGATAAGTTAGAGGATATGTTAGCAGATGAGTCAATTGATGTGATTTATGTGGCAACAATTAATCAAGACCATTATAAAGTTGCTAAAGCAGCTCTGTTAGCGGGAAAACATGTGTTGGTAGAAAAGCCTTTCACCTTGACTTACGACCAAGCGAATGAATTATTCGCTTTGGCAGAAAGTTGTAATCTGTTTTTGATGGAGG # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //