Array 1 4-692 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRCC01000004.1 Pseudomonas aeruginosa strain Pa2441 K9_S46_R1__paired__contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4 28 100.0 33 ............................ TTTTATATACGACAGCGAATACCTCCGATCTTA 65 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 125 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 185 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 245 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 305 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 365 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 425 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 485 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 545 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 605 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 665 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 12 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : TGTG # Right flank : AGATACCTGACGGCCTGGTGCTGGATCACCTGTGTTCACTGCCGTGTAGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTAGGCAGCTAAGAAATCGTAGTGGCCCCACGTCGGCGGTAGCTCGCCGTTCACTGCCGAGTAGGCAGCTAAGAAACTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10757-9529 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRCC01000004.1 Pseudomonas aeruginosa strain Pa2441 K9_S46_R1__paired__contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10756 28 100.0 32 ............................ TGTTCCTGCTGGCGGTAGATCAAGAATTCTTT 10696 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 10636 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 10576 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 10516 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 10456 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 10396 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 10336 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 10276 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 10216 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 10156 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 10096 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 10036 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 9976 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 9916 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 9856 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 9796 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 9736 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 9676 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 9616 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 9556 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 21 28 98.3 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 32124-33268 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRCC01000064.1 Pseudomonas aeruginosa strain Pa2441 K9_S46_R1__paired__contig_64, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================================================== ================== 32124 28 100.0 33 ............................ AAGGCGGGCGTACGAATAGCGGCGAGTCGGTGT 32185 28 100.0 32 ............................ AGTCGAAGTCACCAGTCAGAACCTCCCATTCC 32245 28 100.0 32 ............................ TAGTCGGGAGTCAGGCTTCGCCCCGTTCGATG 32305 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 32365 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 32425 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 32485 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 32545 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 32605 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 32665 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 32725 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 32785 28 64.3 68 ..................NNNNNNNNNN NNNNNNNNNNNNNNNNNNGTGTAGGCAGCTAAGAAAACCCGAATGCATCACCAACCCACGGCGTGCCC 32881 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 32941 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 33001 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 33061 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 33121 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 33181 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 33241 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ==================================================================== ================== 19 28 98.1 34 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : AGAAACAAACGCCCCAGCAGA # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //