Array 1 61539-61776 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCIO010000014.1 Megasphaera massiliensis strain DFI.1.48 HCLCFHGL_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ====================================================== ================== 61539 23 100.0 54 ....................... AATTAATACTTGTTCAACCATGTCAAACCGAATTTCGTTGCTGTTTAGAACCTT 61616 23 100.0 47 ....................... AGGGTAGTCTTTCCCTCGATAGCAAAAAGTTCCGAGTTTAGAACCTT 61686 23 100.0 45 ....................... TTAATGTCGCTAAAATTGGGCTCTTCGGCCTGAGTTTAGAACCTA 61754 23 87.0 0 ........C..........G..G | ========== ====== ====== ====== ======================= ====================================================== ================== 4 23 96.8 49 AATCCCCGTAAGGGGACGGAAAC # Left flank : TAACAGCGTAAGCCCGATGGGGCAGATCTAAAAATAGAGTAGTAGCTTATAAAAGTTACTACTCTATTTTTTATCGAAAGCGGTAAGGCGGGTTCCGATTTAACGGTAGAGAATCGTTTGAAGGTTGACGGTCTGGGGAGAACCTGTCTTGGTAAGGGATTGGAGAGGGGATATTTTGGGATTTCCAGATCTCAAGCAATCGAAGCTCATGTCCATAAACCCCCCTTTTGGAGAGCGCTTAAAAAAGGTATTTCATAGCGGCGTTGTCGGAAAGTACTATGATATCCGCCAAAGAATTTCAAACATATGGTATAATATAAATAGATTTACGGATTTTATACCATTCTGCCCCCGATGGGATGAAACTGCGGCTGATGGGGATTTTTGAAAGAAACTTTCAGCGAAAAAGCAGAAAACAGCCGAAACATAAAATCCGCCCCGCAAATGTCCTTTTCAATGGCGTAACGAAGCCATTTGTAAGGGGTGCTGTTTAGAACCTT # Right flank : GCTTTCTGCTTTGAAGCGTAAATCTGAAGTTGGAATGAGAAAAGCCGCTGCGGGCATCTGTTTGTGATGTCTTGCGGCGGCTTTTTGCCATGTAGGAGTACTTGGTTGGGTGAAGGGGTACGAAATGATCGTATTGTAGCTTTTACGTAGAGGGACGATGGAGTTCGGAGTATGATGCAGGATGTCCTTTTTAGAGCGACGTTATCATTAGATCCATGCTATAATAGAACTAAAAAAGTGCGGAAAAAGGCATTCTTCAAAGCACGAGATAGGCGGTATAAGAATATGTCTCACGAAGAAAAACGGGTATGGGGGATTCATACCACAGATGATAATTTATTTTTGCAGCAGGCTGTCATCGCCATTGGTTGGAAGGCTATGGGCGATTTGAGCCGGATCGAAGCCAATCGGGAGGCTTTCAAGGAAAAGTACGCTGCCGTTTATCCTGATGCCAAGAAGGGCCGTGTTTCCAATCATGTTGGCATGCTTTATCGCTTTGT # Questionable array : NO Score: 5.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.29, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGTAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.94%AT] # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 39973-40216 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCIO010000016.1 Megasphaera massiliensis strain DFI.1.48 HCLCFHGL_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ===================================================== ================== 39973 23 100.0 53 ....................... GTAACTACATAATGGCAATGGCCGTTAATCGGTTTATGGCAGTTAAGAACCTC 40049 23 91.3 48 .......TC.............. GGTAGAATGACAGGCTATCCATGGCCTTATTGGTAAGTTAAGAACCTC 40120 23 100.0 51 ....................... TTCTTGCATTTTTTTCGTTCTGCTTAATCTGTTTTAGGCGTTAGAAACCAT 40194 23 73.9 0 ...............G.T.TTTT | ========== ====== ====== ====== ======================= ===================================================== ================== 4 23 91.3 51 AATCCCCGTAAGGGGACGGAAAC # Left flank : GGCCTGGATCCTACTGACCTATCAAAATGGCCAGTATACCACCGTCAACGACGGCATCATCCTGCCCTTTGTAACGAAATAATGAGATAAGAAACTCGGTGGAAATTCTCTGATATCAGACACATTTTTCCATGCTAATCAGGGATTCCAGAATACTTTTGGCAGATAATGAGGATAATTTAAGTGCTTTCCATATTAAACAGGGATGATTGAATAAATCATCCCTGTTTATTTTATGCAGTAAAAAGTAAGTATGACTTGAAATGCTGTATAAGTATATAGTGTATAAAAATATAAACAGTGGTATAATAAATATAGTTGATTGAAGACGGCATTAAAGCATATTCCACCCCGCAATAGCAATGATGCCGATTTTCATAGTTTATAGTATCAATTATCAATATAAAACGCTGAAAAACGGCAAAAATAAAATCCGCCCCGCAAACGCCATTTTTGATGGCTTAGTTATGCCATCTGTAAGGGGTGCCGTTAAGAACCTC # Right flank : TTGGACGAAAAAAGCTATGGATTTATGTTTGTATACATGGGTCCATAGCTTTTATGTTCTATGGATGGTATTGAATCTTTAGAAACATGGTGTGGGGTAATTTTTGATTACGGTGGCTCATTTACTTTCATTAGAGATTTCGCTAATTGGCTGTGATATGATAGAATGAAGGTATAATCATGGATGGCGGGGTGAGGGTATGGCCTATAACGTACCGGATGTGGTTTTGCAGGATATTTCTCGATTTGCGGAGAAACATGGGATTCGTCGGGTCCTTTTATTCGGTTCCCGAGCCAGAGGGACGCAGACGGAACGCAGCGATATTGATCTGGCTGTCTGCGGCGGGGATTTTGACGGCTTTTACTGGGATATCAAGGAACATGCGCACTCTTTGTTGATGATCGATGTTGTTAATTTAGATGCTGGTGTTTCTGACAATCTGCAACGGGAATTGGAAAGGGATGGGGTCACGCTGTATGAAAAAGTTGGATAATTTTTCA # Questionable array : NO Score: 5.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.56, 5:0, 6:0.25, 7:-0.40, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGTAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2571-5182 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCIO010000028.1 Megasphaera massiliensis strain DFI.1.48 HCLCFHGL_28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2571 32 100.0 35 ................................ TTTATGACGACGTATGGAACGACCGAGAAGACCCA 2638 32 100.0 34 ................................ GTGCCGATGATCGAGGGGCGTTCTTCTGTCGGGC 2704 32 100.0 34 ................................ GTAGCAACTCCGTATCATGTTTCTATGGTATAAT 2770 32 100.0 33 ................................ GAAGGCGGCGATAGGAGACTGCAAAGCCTTAAC 2835 32 100.0 35 ................................ ATATCCGAGGCCGAGCATATGAAGGCCCAGAACGA 2902 32 100.0 34 ................................ ATCAACCGCGGCGACCAACTGCCGCGCATCTTTA 2968 32 100.0 35 ................................ AACAATGCGCGACGTCTGGCAGAAACCGAAACTGC 3035 32 100.0 35 ................................ TCGTTATCGGCATGACAGTTTATATGTCAAAAGAG 3102 32 100.0 36 ................................ GTTTTTTCCGAACACGGTCGCCGATCAGAGCGTCGA 3170 32 100.0 34 ................................ GCCCATGTCAACCAACTCCCGGACGATATTACTC 3236 32 100.0 34 ................................ TAGTATGATTTCATCCGATGGTATCCTAATCATA 3302 32 100.0 34 ................................ GACGCGGGCAGTTACAAGGCTATCAATTTGAGCG 3368 32 100.0 33 ................................ GAATGATATCTTGTTTGATCGATTACGCCGGCT 3433 32 100.0 35 ................................ AAAATTACCCGGTTTGCCCTCTAACTCTAAAGCAA 3500 32 100.0 35 ................................ GAGTATGTTGCCATATACTGCTGGAAACGGATGTA 3567 32 100.0 34 ................................ ATGTTTGACTGGGCGAAGTCGCTTAACTGGACGA 3633 32 100.0 34 ................................ TATTATCCTCCTATTCGACTTTTATACCATACCC 3699 32 100.0 33 ................................ TTCGGTGGACCCGTCCGGGGCAAAACAAGCCGA 3764 32 100.0 34 ................................ GATTTGGTTGAAATAATACGCAATTTAGGAGATA 3830 32 100.0 34 ................................ GTTGCTGGATGCAATCAGCCAATACAATGCCTTG 3896 32 100.0 34 ................................ TTTTCGGATCATACGTTAATACGTTAGACATTAA 3962 32 100.0 34 ................................ CTCGATCAAGTACAGCGGACTTGCGATAATCATC 4028 32 96.9 35 .............T.................. GGTTATATAGGCCTCGATCATTTGTTTTTGCTCAA 4095 32 96.9 34 .............T.................. ATATAATCGCATGTAAGGAGATGTGTATATATGA 4161 32 96.9 33 .............T.................. ATCGTATTCACCCAGGACATAACGGCGCTGGTA 4226 32 96.9 34 .............T.................. GTGCTGGCGGTATCCGTGACAGACGGCGCGTTGG 4292 32 96.9 34 .............T.................. AACTTCGCTGGAAGAAACGTATGCTGTCCCGTTT 4358 32 96.9 34 .............T.................. GCGACTATATTACAAACGGCCATTGCTCATAGAG 4424 32 96.9 34 .............T.................. AGTACGCGGATTGTCGGACTTCATCATAGCGATC 4490 32 96.9 34 .............T.................. TTGGATATCCTTACACGTGCTTGATTGTTATAAC 4556 32 96.9 33 .............T.................. AACTTAGGGTTGACTAAATAACATGGGTGCCGT 4621 32 96.9 35 .............T.................. GTTTATATGTCGGATGCGGTTGACAGCCTTGCGTC 4688 32 96.9 34 .............T.................. AGCGTCCCAGCAAGGGTTATGCAGCGTATACAAG 4754 32 96.9 35 .............T.................. GGAAGGCAGCGCACGGTATAAACAAGTAAATCAAG 4821 32 100.0 32 ................................ TCTTCAAAAATTAAAGCCCCGGAAATGGTCAA 4885 32 96.9 35 ..................A............. GGGAAATTACGCGGCATTATCAAGTGGAAATCAAC 4952 32 93.8 34 ............................T..T GGAACCTACAATCCGCCTCGGTCGAAGAATAACT 5018 32 90.6 34 ..........CA.T.................. GAAAAAGGCCCAATGAAACCGTTTTCGAATGTCA 5084 32 96.9 34 .............T.................. CACGCCGACACAGTTAACTACTGTTGCGCTCGTA 5150 31 81.2 0 .....-....A........AA....C..T... | C,A [5160,5166] ========== ====== ====== ====== ================================ ==================================== ================== 40 32 98.1 34 GTCGCACCCTTCACGGGTGCGTGGATTGAAAC # Left flank : AGTTTATATAGCCTTGAGATGAGACTCTATTTTCAGTGGGTAAGGTGTCAACCATAGGAAGGTGAAGCAGATGAAGAAGATGAAAATAAGTCGGATTATCGGTTTTGGTTTTGGATTTATGCTCCCGAAGATATTAAAACCGGCGATAAAAATTGCCGTGATTTTGGGAATTGGGTATTTAAGCACGAGAGGTTATAAGCAACAAAAAGAGCAACTTGAGATGAATAATGAGTGAGATCTTGAATAAGAAGTCGACGGATTCCAGGCTGACTGACTAATGGAATACCCTATAAAATTTATGGTGGAGTCACAAAAACGCGCCAGGGTAAAAGTAAGGATCGGAAGTGCGAAGAGATAGTGAACATCTTCTTCGCTGCCAAAATACTTGATTGAAATATAAAAATTTTGATCAAATCCCTAAAGTAGTAAGAAGAAAGTGTATAAGTGGGGCCATATCCCCATCGATACACGCAAAAGAGACTGTAAAAAGTCCTTTTGCT # Right flank : CAAGGCGCAAAAATGCCCTCTCTACATCGGTAGGGAGGGCATTTCTATTGTCGTATTAGTCCTTGAAGTAAGGCTTGAATACGGAACGGTTCGGTTCTTTATGTTGTTTTTTTTCGGAGCGTTGGTTGTTGCGGAAGGTGCCGTGGTTGTTGGAATCGCGGTTTTTCGGTGCGAAGTGACGACGGCGTTCGCCTCGTTCTTGACCATCTTCTTTACCGTTGCGGCGATCTTTCCGATTGCGGTCGTTACGGCGATAGTTGCGGTCGCGGTTATTTTTGCCTTGGCGGCTGCGATGGACGCGGAGCGGGGCTTCTTCAGTAATCTTGACGGGCGTCGTGTCCGGTTCTTTGGTGAGCAGCTTGATAGCGGCTGCGATGAGGGACGCCGAGTCGTAGTTAGCCAGGAGTTCTTCGGCATTTTCTTTGTAGCTTCCGAAGTTACCTTCTTCTGCAGCAGCGGCGAGGTTGCGGATAGCGGCCTGCTGTGCGCCTTCTAAGGCT # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCACGGGTGCGTGGATTGAAAC # Alternate repeat : GTCGCACCCTTCATGGGTGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 16083-16414 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCIO010000032.1 Megasphaera massiliensis strain DFI.1.48 HCLCFHGL_32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 16083 36 100.0 40 .................................... CAGCCATCCAGTTAGCATAGCGGGAAGCTTTTTTAGCGAG 16159 36 100.0 38 .................................... TGTCTCGTTAAACCACTGTCCATATTTTTTAATATTTT 16233 36 100.0 36 .................................... CCGAGTCCGCGTCATGAAGAACCATGCGCAACTGGT 16305 36 97.2 38 .................................A.. GCCGTACTGGATTTATTGTGGGCAAGCTGACCTTGTTC 16379 36 91.7 0 ...........C......T..............A.. | ========== ====== ====== ====== ==================================== ======================================== ================== 5 36 97.8 38 GTCGCATTACCAAATTCCCCGTAAGGGGACTGAGAC # Left flank : GGCCCTTACCGGCGACGTCCTGCACCTCCCAAACTTCGTCGGCATCGCCCTCATTATTGGATCCCAGTGGCTCATCGGAAAATGCCGACACCAACCATAATACCTTCAGACATAAATCGCGTCTCATCGTGGAAAATACTTAAGAACCTTAACCCCGAAGTGGCTGTGGCTACTATCGGGGAGTGTTTTTGCTTATGAGTTTATCTTTGGTAGAGACGTCTGTTTGACCTATGCGATGGCGGTTGTTTGACAGCGCTAAAGGAAAAACGTATACTAAAGAAAAGTCAAAGTAATGCGACGGCTTTGGAAAACCGATTTTAGGGGCAAAAACCCCGTAGGTTTGAAAATTTCCAAAAGCCTTACAAACGGCATGGTTGTGCGACGAAAACTCGATTTCAATTTTGAGTTTTAACCCAGGTCCCCGAAAAAGGCGAAAAAAGCCCGAGGTTTGAAAAAATCGCCTGTGGGCCCGCTCCCAGAGCGGGTACTGGGAGACAGAG # Right flank : CTTGTTGTTATTCAGTAATACCAGAACGCCGGTTTTCTTGTCGCATTACCCATTTCCCCCGGGTTTAATATGCTCCTTTTCAAAAAAGAGGTAATCAATAGGGGGACGGAAAGTCCGAAGGCTTTTGTTTCTAGAATAAGGAATGAAAAAAAGTCGATACAGGCATCCATTTGTGATGTCTTGTATCGACTTTTTGTTGTCTATGAGAGCTATAAGCGGGACGTAGGACGAGGTTTATATCCTTTATGGGGTGGAAGAAGGGCGATAATACGGGACTTTAAAGATAAAACGAATCTTTGAGAAATGGCTTTCTAAGGCGGTGTACCGGCTTTTGTGAGGCGCTTTTTTAGGCAGGTGTAACGCGTTACCTTATAAGAAGAGAAGAAAAGAAGAGAATAGAAATAGAAAAGACAAGATATAAAAAAGATAAGACATAGAAAATATAAAGAGATAAGAGTATAAGTAGATATAATATTTTTTTGTTTTTAAATTCATGATTT # Questionable array : NO Score: 2.95 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATTACCAAATTCCCCGTAAGGGGACTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 13014-12259 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCIO010000031.1 Megasphaera massiliensis strain DFI.1.48 HCLCFHGL_31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 13013 31 84.8 33 ........-....T...-.............GA TATTTCATCTACTTCAAATTCTTCGATGGGTAA 12949 31 84.8 34 ...AT......-.T...-............... GTCTATGATTACGATATTTGCGTAGACGATAAGA 12884 32 93.9 34 .................-..T............ GACGGCGTGCCTACCAGCGGCAGTAATAATCCTG C [12876] 12817 33 100.0 33 ................................. ATACCACGTTACCTCGAAACTATCTAGGTACAT 12751 33 97.0 34 ...............A................. TCCGTCGTAAAGAAAAACAACGACAAAGAAGTCC 12684 33 100.0 34 ................................. TGGGGAATAATTAACAGCTCGTATGTAATCGTAG 12617 33 93.9 33 ...A.............A............... CTGTACGTTAATCATTTCGGTCCCTCACCACAT 12551 32 90.9 33 ...........C.T...-............... TGTCGCCATCGTGTCCTCCTACTTCAAAAAAGA 12486 32 87.9 34 ...........CAT...-............... GTTTTGGAAAGTATCCGGAGACCGCCGGAATCTG 12420 32 87.9 33 ....T......C.T...-............... CGATCATTTCGATGGGTCCGCGGTGTAGTGTAT 12355 31 93.9 34 ...........--.................... GAGGTGGAAATCAGCCTTTCGACCGCATCCCATT 12290 32 84.8 0 ...........C.T...-...A..A........ | ========== ====== ====== ====== ================================= ================================== ================== 12 33 91.6 34 GTCGCACCCTTTGCGGGGTGCGTGGATTGAAAC # Left flank : ATGTCGGGATACCTAAATCAGCAAAAATCGTTTCTGCCTGACGCTTCAAATCGGCGTCGACACGGAGATTTAATGTTTTTGTTTCAGCCATGTGAATCAGCTCCTTTCACAACCATTATAAAGATAGATGAGGAAAATGTAAAGTAATTAACGTTACGTTGTAGTGATGATAGTGGTGAAAACTATTTTCCTTATTTATGTTTGTTGGGGGAAGGCTTTTCTGCCTTTTGAGGTTGATTGTATAAAAATGTCGCCTAAATAAAAAAAGTCCCCTAAATAAAATAGTCCCCGGATCCGGCACATTTCCTATAACGGGACGGCTTACTACCAGGGACGCTATTAACGATGCTGCTGTATTATATGGATTTAAAAGGGAAATGTCAATACACAGGGATGGAATCGTTAACAGCTTTATAGATGGAGGAAGGAAAGTTATTTATGCCATTATGGTTTGAAATGGTGATATAATAAAAGTAAAGAATGTAAAACGTCCTTTTGTT # Right flank : GCGCCAGACTTAGGATCTGGCGTCTTATTTGTAGTCGCATTATAAAGAGGGCCTGCATTAAATCTTATCTTGCAACGGCGCTTTTTTTCTTATTTTTCAACTTTTCTTCTCGTTCCGCCTTTCGTTGACAGTCATCTGTTTCTCATGCTATAGTAAGAACGATATAATATAAGTAATAGGTCAGGTGTCACAGACTTAATAGAGAAGCCGGTTCAACGCCGGCGCGGTCCCGCCGCTGTAAGGTGGAGCCAGGCTGCAAGGATGTCACTGTACTTTTGTATGGGAAGGCGCAGCTTTGGCCATGAAACCAAGCCAGAAGAACTGCCTGACGGATAATCACCGATAGACCTGCGAGCGATGGGAAGGAGATTGTACGGAGCATATTCGGGGACTGTCGTCTATACGACGGTCCCTTTATCTTTGTATGTCCTTCTCCCGCAGGTGTGCTACAGGAAGGGGATAATACTTACGATGGAAGCAATCATTCACGGTTTTCAGTT # Questionable array : NO Score: 8.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.58, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTTGCGGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.50,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [14-14] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 15644-14083 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCIO010000031.1 Megasphaera massiliensis strain DFI.1.48 HCLCFHGL_31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 15643 31 100.0 35 ............................... GAATGGCACGATGCAAGAACGAACACACCTACGTG 15577 31 100.0 36 ............................... AGATTCCAGCCGAACCCGCTTCAGACGACGAAGGAG 15510 31 100.0 37 ............................... TAATGACGCCATAAGGATATACCCAATCGGCCCCCAG 15442 31 100.0 35 ............................... GTTGCGCTGCCGATGGGCAGCGATTACAATACCGG 15376 31 100.0 35 ............................... AGTTATATCGTTTAAATCGGTGCCCGCATCAATAG 15310 31 100.0 35 ............................... ATTTCGTCGCTCGTGTCTGAAACGTTGAATGCGAG 15244 31 100.0 35 ............................... GGCGATAAACTTACAGCATTACATAATAACGTTTG 15178 31 100.0 36 ............................... GTGGTATGCTAATAGTTAAAAACGGAGTGATTATAG 15111 31 100.0 35 ............................... ATACTCCCAATGGGCTTTTTCGACCAGCACCCGCG 15045 31 100.0 37 ............................... ATTCCATATAACATTATCGCCTGCTTTGATGGCAACG 14977 31 100.0 35 ............................... AGTGAGATGTTTTTGATTGGGATTCGTTTTGTCCG 14911 31 100.0 37 ............................... GCCATGCGATCCCTGTTGCTGGACCGTATAAGACGAG 14843 31 100.0 35 ............................... ATATGCATCACGCAGTTCCGCATCGCTCTCCAGCG 14777 31 100.0 36 ............................... AAAAAAGGGAATAAACCACACAATACGCGCCCGGTG 14710 31 100.0 37 ............................... ATCGACACTCGCAACATCTGCCGAAGCTTGGCCAAAG 14642 31 100.0 36 ............................... GAATCGACCTTTCCGCGAAAAAATATGATCCCATCG 14575 31 100.0 36 ............................... CAACAGTATGATTAATTCTATCGGTAGGTGGTCCGG 14508 31 100.0 35 ............................... GTTAATAGTATTGTGCTTATTGTTAGGAGATGGTG 14442 31 100.0 36 ............................... ATTGGCAACGTGGAAATTATAATTGAATTCTGGGTG 14375 31 100.0 35 ............................... GACAGCGACATGGGGCTTGACCTACTGGGAAGATG 14309 31 100.0 35 ............................... TCAGTATCACTATATTCAGTTTCACTATACTCAGG 14243 31 100.0 35 ............................... CAGTTTCCGTAAAATCCGGCAGCTGAAGTGATTCG 14177 31 93.5 33 .......................C.....C. AGTGCGCCCACACTGCCGTTATAGCTACAAACG T [14151] 14112 30 74.2 0 .T.......T.T-...C......T...GG.. | ========== ====== ====== ====== =============================== ===================================== ================== 24 31 98.7 36 TCGCACCCCGTGAGGGTGCGTGGATTGAAAC # Left flank : CGACCCGAAGGCAGCATTGAAATGACGAAATTCTATTGGGTCCGCCATGACAATAAAACGGGCAACGCCTCGTCAGCTCGCGTCCATCACAGCATCACGACCAGCTTAAAAGAAGGCGTCACGTCACCGCATATCTTTGACGACTACGTCATCGACGACAGCGCTTTGAAAAATATCGAAGGCCTCAGTATTGAAATCTACCAAGAAGGCGAAAAAATACAGTAAATAACTACTTATAAGGGTAGTCAGATTTTGGATTTGTTCGACTAATATGATGTCATATGGATACGATATATGTCGAAAGTCATGAATTGAAACCTGTGTAAAAACAGCTTTATGTAGTGCGAAGGTATAGTGAACATCATATTAGTCGTCAGAATCCTTAAGCAAAATATAAAAAATTTGATGAAATCCCTAAATTTAGTAAGAATAAACCGTATCTGTGGGAATATATTCCCATAGGTACAAGCAAAAGTGACTGCAAAAAAGCCCTTTTGCTG # Right flank : TTGGTGCCGAGGGAGGGACTTGAACCTTCACTGTGAGTGCGTAGCGTGAAACGACATACTAAAAACAGAATGGACGAGAGCGAGAAAAACTCACTCACGTCCATTCTGTTTTGTTGCAATGATTAGAATAGCTCACTGTGACTCCCGGTTCGGGTCAAGGTTAATATCAGGATATCCTCTTCTACCTTGTAGATCAGCAGCCAATCAGGCAAAATGTGGCACTCACGGAAGTCGGCATAGTTGCCGGATAAGGCATGGTCACGATACTTCTCTGGGAGTGGTTGCTCTTGGACGAGATAGTCAAGCACTTCCTGCAACAGCTCCGGTGTATGCCCGGGTTGCTTTAACACGCGCTTGTAATCCTTTCGGAACTGTTTGCGGAAGCGGATTTTAAGCATTTAGTGCCTCCATGGCATCTTTAACCGAATCATAGGTTTTGCTGAGATTGCGATGATGATTTACGTCGTCAATGGCTCTCAGGGTCTCAAGTTCATTGGGGG # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACCCCGTGAGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.10,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2639-2965 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCIO010000035.1 Megasphaera massiliensis strain DFI.1.48 HCLCFHGL_35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 2639 36 100.0 38 .................................... AAACTCACCGTGCTTTTGAAAAGATTCCATTCTTTCTC 2713 36 100.0 37 .................................... TTGATACCTGTAATTGTCGACGGATTTTCGAAGCAGT 2786 36 100.0 35 .................................... CTGCGAACCAATGTTGCATCATGATCCGTAAGATT 2857 36 97.2 37 ......T............................. TATGTTGCTTCAAGTTCAAGCGGAGACCCTCCGGATT 2930 36 94.4 0 ......T..........................G.. | ========== ====== ====== ====== ==================================== ====================================== ================== 5 36 98.3 37 GTCGCAGTACCAAAATCCCCGTAAGGGGACTGAAAC # Left flank : ATGCCATGCTGAACTTTGCCGTCAGCTGCAAACAGTACGTGAAAAACGTCGTCCTCACCGTCGTCGATAAAGTCGAAGACAGTGAAGAAATCAAGAAGTGCCGGGCCATCTGTGACGACTTGGGCTTGACCTTGCGGGTCCGGGTCTACGAAGATAAATAGAGAATCAGGCTATCATAAGATTATCTGAAAGAGCTGTCTCACGACGAGGCAGCTTTTTTGACGACGGGGAAGCCTCGATGAGAACGTTGACAATAAAAGGTGAAAACCGTATACTTGAGATAAATCAAAGACTGCGGCGGCTGAGGAAAACCTATTTTTGGCTCAAAAACCCCGGAGGTTTGAAAATTTCAAAAAGCGCTGCAAATGGCGTAACTAAGGGAAAAAACGACACTGTCCAAATTTTATTTTTCACCCGGGTCCCCGAAAAGAGCGAAAAAAGCCTTAGGTTTGAAAAAATCGCCGGAGAGCCCAGACAGGGAGCGGGTACTGAGGGACAGA # Right flank : CTTCAGGACTACTTGCTAATGATGTACAGCAATGTGTCGCATTCCTATTTTCTTAGCCCTGATGTGACTCCTTTTTATAAAAGGGGGATATAGGGGAGCAACATTGAATCTGCTATGAGAAAAGCCGATACCGTCATCTATTTGAGATGTCTGGTATCGGCTTTTGTTATGGGTATCGAATTGGAGAAATACCTAGAAAAGATCAAAGCCCGTTCTCGTGATGAGAGCGGGCTTTGTCGTAGGACGATGATTTTTTACGATAAATAATGACGCACCTGACAGGCCGTGTGGGCTAGGACCCACGATGCGGAACACAGGGCAAGGGGAGCAGCGGCGATGACGACGGCCAGGTTTCTGGTTTCTGTCGTCATCGTGCTGTGCGTCAGCCATATAAGGGCTTTGAGGACGGTTTCGACAGTGACGCAGGCCGTAAACATGGCGATGATAAAGACGGCGACGGCCAAGGGCAGCATGATGAGATACGAGAAGAGATAGGTTGT # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGTACCAAAATCCCCGTAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCAGAGTACCAAAATCCCCGTAAGGGGACTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 15736-15010 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCIO010000034.1 Megasphaera massiliensis strain DFI.1.48 HCLCFHGL_34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ========================================================================================= ================== 15735 23 95.7 50 ........T.............. GCGTTAAGCTTGCAGTCGATCCAGTTTCTAGCCTTGATGTTAAGAAACTC 15662 23 95.7 52 .......A............... TTGGTATACTTACCAATGTAGCTATCTTCAGCTGTTTTCTGTTAAGAACCAC 15587 23 95.7 51 ........C.............. TTGTTAAATAACATACACATGTTTCAATCCGCGCCGCCCGTTAAGAACCTT 15513 23 91.3 89 ............A.....A.... AAGCTAACTTGTGATTCCGAACAACCAATTATTTTGTTAAGAACGACTGAACATACTCCTTTCCTGATAAGAAAGGAGGCTATGCAGAG 15401 23 100.0 51 ....................... CGCATTTTCATATACTTCATTTGACCTATATTTCTTGCTGTTAAGAACCTT 15327 23 100.0 53 ....................... CCCCTGATTCTCGGGATTGTTCCCAGCCGCCAATCATGTTTGTTAAGAACCTT 15251 23 95.7 49 ........C.............. ACCTCTGACTCATAAGTCGTATATGAAATCATATCTTGTTAAGAACCTG 15179 23 95.7 47 ........C.............. GACTGGACTTTGTCCGGGTCCTAGGTTTGCGACTCGTTAAGAAACTT 15109 23 95.7 54 ........C.............. CTTGCATCTTGCGTATGCCATTGCAATTTCTCGCTTTCTGCCGTTAAGAACCTC 15032 23 91.3 0 .....................CG | ========== ====== ====== ====== ======================= ========================================================================================= ================== 10 23 95.7 55 AATCCCCGAAAGGGGACGGAAAC # Left flank : TTAGGCAAACCGCTTTTTGATGATGATATGGAAGCTTGGGATTATGGCCCTGTGGTCCCTCCTGTCTATCAGACTTATAAAGGATTTGGGCGAGAACCAATAAAAGATGGTGTTGACTATCAGGACACATTCTCTGAACAGGAAAAAAATGTCTTGTTTGATGTACTTCGCTACTATGGACAGTTTTCCACATCGGCTCTCGTATCTCTGTCGCATGAGGCGCAGTCTCCGTGGGCTGCTGCGCATAAAAATGGCGATAAGCACGCTACCATATCAAAAGAATCGATTAAAGCCTTCTTTGAAAGTAAGCCGCCCATCCCTGAATTCACTATTCCCTACCAAGAAAACCACTTTGCAGGATATAGAGATAAGGACGGATATTTAGTACTTCCCAAGGAATGGGATGATGAAGCGTAGTTGGGAAGTATGGTGGGGCGCCTCGCAAACTGTAAAATTGATGGCGTAGTTAAGCCAGTTGTAAGGGGGCTGTTAAGAACCTT # Right flank : TTGTAAGATGTAAATTTGAAGACGGTATGAAAAAAGCCGGTACCAGGCATCTGTTGTGATGTCTGGTACCGGCTTTTTGTGTCGGGCTATTCTGTTGAATTGTACTGTTTTACGTGAAAAGGAGCAGTTATACCTTTATCGGTATGAAATGGGTTGGGGCAGCGTTAGGGGGAGCTTGTTCCGGATCTTATGGCCGGCATACTTTGCAGGGAACGTAGCCATAGGAGACGGCTTGGTCCCGGCTGTCGAAATAGGCGCGATTGGATTCGTTCATTTTTTGTTCCCAGCGGCAGCCTTGGTTGTGGAATTTCATGCTGGTCATGTTTCCCACATAGGTGGCTGAGGCGATGGCGGCCGTAGCTGTCCATAGGATTGTCGTTAAGGCAATGGCTATTTTCTTTTTCATGGCGAGGCTCTCCTTTTTTGTAATCTTTATTATCATTATAGCGAATATAATTAATTATGGAAAGTAAATTCATGGTATTCATTAAAATCTGCGA # Questionable array : NO Score: 4.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.81, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGAAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [7-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 1 23323-23729 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCIO010000006.1 Megasphaera massiliensis strain DFI.1.48 HCLCFHGL_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 23323 36 100.0 38 .................................... GACGGCAAATAAAACTGCTAAAACCAAAACAAAAATAA 23397 36 100.0 39 .................................... TCGCCGAACTTCACGACGATACATAATTCCGGATACGAT 23472 36 100.0 37 .................................... ACTCCTCCAATCAGTCAGTCGAGATATAAAAAGACAA 23545 36 100.0 40 .................................... GCGCCGTAGCCGGCTTCGTTGTTAAGCAGGATCGTAGATC 23621 36 100.0 37 .................................... GAGTCTCCATGAAAATGGACACAGCCTCGTTCGTTGA 23694 36 91.7 0 ..............A.............G.....C. | ========== ====== ====== ====== ==================================== ======================================== ================== 6 36 98.6 38 GTCGTATTACCCAATTCCCCGTAAGGGGACTGAAAC # Left flank : ACCTGGTGGAACGCTTGCAATTATTTTTAAAAGAGGCCAATGAGGAAACGGTGGCTCAACTCCCACCCCATAGAACATAAAAACGATGAGTATCTTTTTTTGCCGCCGTGAGATCCTCGCGATCCATATCTCACCGTAGAATGGAAAACATAAAATCCCTGAGAAAGGCGATGATAAGCAAATCTCAGGGATTTCTTTATGTCGTTGCGGAAGGCCATCATGCATCGACGTCAGAGTTTGACCAATTGACAAGATAAGTCAAAAAAAGTATACTGATTATAAATAAGGGTAATACGTTAGCCTGTGGAAAACCTATTTCAGGGTCAAAAACCCGGTAGGTTTGAAAATTTCAAAAAGGGCTAAAAATGGCGTAACTAAGGGAAAAAACGACACTGTCCGATTTTGGTTTTGAACCCGGGTCCCCGAAAAAGGCGAAAAAAGCCCGAGGTTTGAAAAAATCGTCTGTGGGCCCGCTCCCAGAGCGGGTACTGGAAGACAGA # Right flank : CGGGAAGAATCTGAACCGGTCTCACTCGGACATTTCAATCAGAGACACGCAAAAGCACCGCCGCAGTCGAAACTGCGACGGTGTTTTTTATACCCTAATATAAAGAGCAACGCCCTTGAATCGGAATACCGGGTCAAGGGCGTTGTTGTAACAGTGAGAAATCCTATACATTTATGCAGACGACAGAAAGGATTTGAAATTCTTGAAAGAGTTGCCGATGAAAATACATTATTTGGCAGGATTCTGTGACAATCGTGTAGAAAATATAACGTATAGAAGTATTTGTTCCGTAAAAAACAACATAGATATTGAAAGGAGATTGAATATGTCGGAATTGTCAACCTTATTAGCGAATCAGCAAGGCCTGCTGGAGAGGTTGAAGGTTTTGGATGGTGTCGGAGCAGGACGGAAAAAAGATGAAATTGCAGCTGTGAAGAATGAACTTCAGGCCATGACCGCTGAAGCGGATCGGTTATATAGTGACAGCCGTGACAGACTTT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTATTACCCAATTCCCCGTAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 40577-41875 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCIO010000006.1 Megasphaera massiliensis strain DFI.1.48 HCLCFHGL_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 40577 36 100.0 38 .................................... TTATGGCGCGAACACTTTTCCACCAGGCCGCGCTTTGT 40651 36 100.0 43 .................................... TCGCCACGCACGCGAAGAACAAAAAGGAGGCCAAAAAATAGGG 40730 36 100.0 39 .................................... TGACGTTAGCACGATAACCATAAAACGGATTGTTTTTCT 40805 36 100.0 39 .................................... CACATGGATAATTTGGATTATGGTAGTTTGGCTGCTCAT 40880 36 100.0 38 .................................... CCGCATCGAGCATGATACGCGAAAATGAGTTGTCACGT 40954 36 100.0 36 .................................... TCGTCGACTTCCATCCAGGTGTTACAGTCGTTACAG 41026 36 100.0 38 .................................... TCGTCTGTCTTTCCGATAACGGCAATGACGTTATGCGT 41100 36 100.0 36 .................................... TTACGTGTATCCACCAAAAGGATTGCACTTCAACGA 41172 36 100.0 37 .................................... CACCATTTGATACCTGTAATTGTCGACGGATTTTCGA 41245 36 100.0 41 .................................... TCGTCGACAGCTGCTTTATAGGTAGCTTCGATAATTTCGTC 41322 36 100.0 36 .................................... AGCGTTATCTAACGCCTCTCCGAGATTTTTATAGAA 41394 36 100.0 38 .................................... TACGATTTAACATTAAATCGCGATAAGAAAATTTTAAC 41468 36 100.0 40 .................................... CCGGCGGTAATGCCGTTGCGGCCATCACAAAGCAGCGCAT 41544 36 100.0 37 .................................... CGCTTAAAGAGCCATCCGTATTTCTCGATGGCTTTCG 41617 36 100.0 38 .................................... GAGTCAGGGCGACTCATCGCTGCTATTGTTTTGCATGT 41691 36 100.0 40 .................................... TCTTGGAATAAAGCCATCATTTTATTGAATGGACGTTCTC 41767 36 100.0 36 .................................... ATCGCCAGTAAGACCATGAACGAGAGAAAGTCATAC 41839 36 77.8 0 T.G.AGC.....................T....C.G | T [41845] ========== ====== ====== ====== ==================================== =========================================== ================== 18 36 98.8 38 GTCGTATTACCCATTTCCCCGTAAGGGGACTGAAAC # Left flank : ATATTTACGAATGATTGCTTATGGCATCGTTCAATATCGGTCGCCGGCAAAAGGGGCCTTAGAGATTTTGTACGACTACTTTAAAATCCGGGCAGAACGCAATAATATCAACCATGCCAACGCCGAAGACACGATGTCGACGCGGGAAGTCAAAAACTTGGTATTAGACCTGCTGCAGAGAATAGAGAGTCAACAGTAACCTACTATAAAGCGAGAATCTATCCGCTTCAAGAGAGTTTGACCAATTGACAAGATAAGTCAAAAAAGATATACTAAATATAAATAAGGGTAATACGTTAGCCCAAAGAAAACCTATTTCAGGGTCAAAAACCCGGTAGGTTTGAAAATTTCAAAAAGGGCTAAAAATGGCGTAACTAAGGGAAAAAACGACACTGTCCGATTTTGGTTTTGAACCCGGGTCCCCGAAAAAGGCAAAAAAAGCCCGAGGTTTGAAAAAATCGCCTGTGGGCCCGCTCCCAGAGCGGGTACTGAGGGACAGA # Right flank : GGATAAGTGAAAACTTGTCCTGATTTTTTTATATTTTTTTTGCCTGATGGAGGTGGTGCTGTCCATGCGGTATCTTATTTGCTATGATATTGCGGATACGAAACTTCGTACCAAGGTCGCTAAGTATTTAGAAGGCTTTGCTTTTCGTATCCAGTACAGTGTCTTTATGTGTGAAAACACGGAAAAGGGCATGGCGGAAGTCTATAAGCGCCTCATTGTTTTGACGCACGATGCTTCAAAGAAAGCGATTCTTATCGTTCCCCTGTGTCGGAGCTGCGAAAGCAAGATGAAGACCCTTGGCACGGCCATTGAAAGTGAAACGTATTGTATCATTGCCTGAAAGAAGGGATGTCATGAGTGTTCTCTACTTGCTCTCGACCGGCAGTTACTTGCGGAAAATCAAAGACCGCCTACTCATCGGCAGGGCTGATGGAAGTCATAAGAGTCTACCTATTCAAAACGTCGAGCAAATCGTCCTCAATAAGGGCGGCAAGATTACA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTATTACCCATTTCCCCGTAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 48944-49568 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCIO010000006.1 Megasphaera massiliensis strain DFI.1.48 HCLCFHGL_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 48944 36 100.0 35 .................................... ATTCCTCCAATCAGTCAATCTAAAATATAAAAAAA 49015 36 100.0 38 .................................... GTAGCCTCTACAGCCTTAAACTTAAACGCGTCGGATAA 49089 36 100.0 41 .................................... TTGCAGCGCGTCAAGTAGCGCGCAGAGAAGCGTTACTGAAC 49166 36 100.0 36 .................................... CCGGGAAGACCAAGTCGCGGCGTTCCGGTAATGCGG 49238 36 100.0 38 .................................... ATCCTGCGCAAGATGCTGGCTGGCTTCGATTTCGATAC 49312 36 100.0 37 .................................... TCCTTCGAAGCGGACTTCATATACAGTTCTTTTTTTC 49385 36 97.2 37 ............A....................... AAACAAAATGCAATAATCATGGAAATAGAGATGTTAG 49458 36 97.2 39 ............A....................... CTGCTTTTTTAATGCTATTAATCGTTTTCATAGTGATCC 49533 36 97.2 0 ............A....................... | ========== ====== ====== ====== ==================================== ========================================= ================== 9 36 99.1 38 GTCGTATTACCCGATTCCCCGTAAGGGGACTGAAAC # Left flank : TCCGAAAAGCCAATTACTTGCAAATGATGAGCAACGATGACGTCGCTTATAAACGCCCGGCCGAGGCTACCATGGAGATTCTCTATAACTACTTCCAAATCCGTAATGAACGGAATAACATCAACCACGCCAATGACGAAGACTCTTTGTCGACGGAGGCGATAAAAGACCTGGTCCTCGACTTACTGCGGCGAATGGAAGACATCGATGGGCTCAAATCGTGAAAATATCGAGAGCTTGAACCTTTGACAAGATAAGTCAAAAAAAGTATACTAAATATAAATAAGGGTAATACGTTAGCCTGTGGAAAACCTATTTCAGGGTCAAAAACCCGGTAGGTTTGAAAATTTCAAAAAGGGCTAAAAATGGCGTAACTAAGGGAAAAAACGACACTGTCCGATTTTGGTTTTGAACCCGGGTCCCCGAAAAAAGTGAAAAATGCCCGAGGTTTGAAAAAATCGCCTGTGAGACCAGTCAGGGAGCGGGTACTGGGAGACAGA # Right flank : CAATGATGTACAGCAACGTGACCAGCATTGTAAGTACGTCGTATTACCCGATTCCCCATCTTTAATGTGACTCCTTTTAGAAAAAGGAGGGAATGCCATAGGGGACGGAACAACCTCCGGATGTAGGAGTTGGTTCCTATATTCGGAGGTTGTTGTAGTTTTATTTAGTCTAAGAAGGGTACGGAGCCTGCGCCATAAAAAGAGGTGAACCGATGAAACATATCCTGCTGATGTTTTTTAGTGAAGCACGTCTCCATCACGACGGCATGATGATGGACGGTGTCCGGGACAAGGAATCCGTCGTTCAAAGTATTGCTGATTCATTAAAAGTGCAGGGAGAACAATTAGACTGTCTGTGCTGCTTTTCAACGAAAAAGCTGCCGGAAGAGATTGGCTATGGCGATGAAGTCAGTTGTGCGTATATCCTGAATCATGAGGCCTTAATCCCAGCGCGGATGCAGTCTCTTGCCGGACACTTCATCGGCATCGATTATGATGAA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTATTACCCGATTCCCCGTAAGGGGACTGAAAC # Alternate repeat : GTCGTATTACCCAATTCCCCGTAAGGGGACTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.27 Confidence: MEDIUM] # Array family : NA // Array 4 51820-52146 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCIO010000006.1 Megasphaera massiliensis strain DFI.1.48 HCLCFHGL_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 51820 36 100.0 37 .................................... ACCGGATGTTTTCGTCCCAGAAATCCCATGCCCACGA 51893 36 100.0 34 .................................... AGCATATATCTTCTTTTCTGTCTTTCTAAGCCAA 51963 36 100.0 40 .................................... TTCTTCCGGGACTACGATATCCCAGTAGCGCTGACTCCGG 52039 36 100.0 36 .................................... GCCGGATTACCATCTTCGACGGATCGAAGCTGGTTT 52111 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 5 36 100.0 37 GTCGTATTACCCAATTCCCCGTAAGGGGACTGAAAC # Left flank : ATCGTCAAGTCTATTACTTACGCATGATGAGCTATGATTACGTCGGTTATAAGCGCCCAGCCAAAGCCGTCTTAGAGATTCTTTACGATTACTTCCAAATCCGTACCGAGCGAAATCACATCAACCACGCCTACGAGGAAGACTCGCTGTCGACGCAAGCTATAAAAGACCTGGTCTTAGATTTGCTGCGGCGAATGGAAGACATCGATAAGCTCAAATCGTGAAAATATCGAGAGCTTGAACCTTTGACAAGATAAGTCAAAAAAAGTATACTAAATATAAATAAGGGTAATACGTTAGCCTGTGGAAAACCTATTTCAGGGTCAAAAACCCGGTAGGTTTGAAAATTTCAAAAAGGGCTAAAAATGGCGTAACTAAGGGAAAAAACGACACTGTCCGATTTTGCTTTTGAACCCGGGTCCCCGAAAAAGGGGAAAAATGCCCGAGGTTTGAAAAAATCGCCTGTGAGCCCGCTCCTAGAGCGGGTACTGAGGGACAGA # Right flank : CCCGACTTCGTAAAGATCCTGCATGCATTTTGGATCCTCGTCGTATTACCCGATTTCGTCATTTCTTGACTTTTCATCGCAAACAAGATATACTTATCCGTAGCCGAATGATTGACTGTTTAGGCGCATGATTTAGAACTATTACAAAGAATGGTTCTATTCGTGCGCCTTTTTTGCGTACTTTTTGCCATTCAGTTTCTTTCCGACAGGAGGTATGCCTATGTTTACCCTTTATTATTTCGAAGGTCCCGGGTATGAAATTTTCCCCTTGCGGACCCGACTCAACGACATTTTCACATATCAGGCTCAGCACGCCGTCAATAAGTATCCTGACCTCGCTGACCTTGGCATTGAGCTCGACGATCTTAGCTTTGAGTTCGATGACGGCAGCCATGACCTGGTCCACATCCTCGACGCCTTGGAGGGGCCGAAGGACATTTGGCACGGCGGTGCTGTCTGTGAAGACATCAGCCCCGACGCCTGCCGGCAGCTGCGGAACG # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTATTACCCAATTCCCCGTAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.27 Confidence: MEDIUM] # Array family : NA //