Array 1 41903-40919 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLIN01000001.1 Streptomyces caniferus strain NBRC 15389 sequence01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 41902 29 100.0 32 ............................. ACCACCGGTACGGCGATGAAGCGGGCGCTGGA 41841 29 100.0 32 ............................. CTCGGCGAGGGTGGAGTCGACGCCCTTGGTCT 41780 29 100.0 32 ............................. ACAGACCACCGTGTCGGCCCCGGCGTCGGCCG 41719 29 100.0 32 ............................. GCATCGGCGTGGGGACATCCACGTCCGCCGCC 41658 29 100.0 32 ............................. CACCAGTCGAGACGGGCTCAGCCAGTTCAGGG 41597 29 100.0 32 ............................. ACCTGATCCGGCCCGTACAGCCGGGGGCGCGC 41536 29 100.0 32 ............................. CCGAACCAGCCGCCGCAGTTGGCGCACTGCAT 41475 29 100.0 32 ............................. TTGAAGGCACCGAAGACGGGAACGCCTACTTC 41414 29 100.0 32 ............................. GTGCTTAGTCAGACGGGTGACAGCATTGGCGG 41353 29 100.0 32 ............................. AAGGAGGCGCGAGTGAGCAAACCACCCGCGAC 41292 29 100.0 32 ............................. TCCACCCGTCGCAGCCTGCGGCTGCGGATCGC 41231 29 100.0 32 ............................. GCCTTCAGGCACAGCGGGAGCGGGACGCCGAA 41170 29 100.0 32 ............................. ACGCCAGTCAACTCGCTCCGGGTCACGATGCC 41109 29 100.0 72 ............................. ATCATCCTGAGCATCAGGGCGTCGGCCGCGATGTGGGCCGGTCCAGGAGGACGGCGCCCGGTCAGTGGCGCG 41008 29 100.0 32 ............................. GGCACCACCGTGAGCACCGACCGGAACGTCAA 40947 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ======================================================================== ================== 16 29 99.8 35 GTGCTCTCCGCGCAGGCGGAGGTGGGCCG # Left flank : CTTCTCGCACCGGAGGCCACCGATGATCAAACAGACGACCTGCAGGAAGAACTCGTCGACCTGTGGGACCCCGTCACCGGATCAGTGCCCGGTGGCATCAACCACGCTTACGACGGTGGCCAATGACACCCCCTCGGAACGGTGGTGAACTGTGGCATCGATGATCGCTCTGTCCCTCACGGCGGTACCAGACCACCTGCGCGGAGCACTGACCCGCTGGCTTCTGGAGGTCACCCCCGAGCTCTACGTCGGCACCGTCTCAGCGAAAGTCAGGGACGAACTCTGGAAAACCGTAGCCAACTCCACCGGCAACGGGATCGCTGTCCTCATCTACCCCGCCGACAACGAGCAAGGCTTCGCCATACGGATGTCCGGCCAACGACGACGACACCTCCGCGACTTCGACGGACTCACCTTGGTCTCATTCAACTCAGCCCTACCCACCGAAGAAGCAGATAACGAAACGGCAAAACACTCCTAACGCCGCAGGTCGCGAAGGG # Right flank : TAACCCAGGACCTTGCCCGCCGCTACCGGCCGCCTCTCGGTCACCATCATGGGCTAGACCTTGTCCGACAAGTCCGGCCACAGCTACCGCTTCGGCAACCTCCGCCTCAACGGCCACAGCCAGGTCCGCGTCCACACCGGCATTGGCAACGACAACCGCCGCGACGTCTACCAGGACCGCCGCGCCTACGTCTGGGACAACACCGGCGACACCGCCACCCTGCGCAACGACCACCGCCGCATCGTCGACGCCGAAAGCTGGGGACGCCACGGTCACTGACCGACCCTGAACCGGCCGGTGAGCTGTGCCGCTCGCCGGCCCCACGGTGCGCCGCAGGCCCGTGCCTGCGGCGCACCGCTGCGTCCGGCCCAAGGGGAAGGACCGCGAACGCGCCCTCTGTCCATGCTGCTGGCCCCGTGAGTCCGCTTCGGGGCCAGCAGATAGCCGGGATGAATCCCAGCAGGACCGGACGCGTTGGCTACACCCGCTCGAACTCCACG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCAGGCGGAGGTGGGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGGAGGCGGAGGTGAGCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.80,-11.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 47507-47051 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLIN01000001.1 Streptomyces caniferus strain NBRC 15389 sequence01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 47506 28 100.0 33 ............................ GCTGTCGGGCAGCGGCTCGGCGGCGCTGTTCCA 47445 28 100.0 33 ............................ GTGAGGCTGTCAAGGTCGGTGAAGCCTGTACCG 47384 28 100.0 33 ............................ GTCCAGGCCGACGATGCTGGAGGCGCGGCAGCC 47323 28 100.0 33 ............................ GGCCCTTGAGCGAGACGAAGTGATGCTCGACCC 47262 28 100.0 33 ............................ GAGGACGACGACTTCGCGGCTATGGATCTGCCC 47201 28 100.0 33 ............................ GGCGTGCACGTCCAGGGCCAGGAGCAGGGGCCG 47140 28 100.0 33 ............................ GCAATACGGCACGGTCACCGGCCGGTTCAGCAG 47079 28 89.3 0 ...........A..C..........A.. | T [47071] ========== ====== ====== ====== ============================ ================================= ================== 8 28 98.7 33 GTCCGCTCCGCGCAGGCGGAGGTGTCCC # Left flank : CCTCCTCGTCCAGTCCACCGGCATCACCATCAACCGCACCGCCCTCCCCGCCGGCTACACCACCAACCCCGTTGAATACCGCGACCTCACCCCGCTCCTTGACTGGCTCAACCCCGGCACTGCCGTCCGGTACCGCATCGACGCCAACCCCATCAAGGCCGTCTCCATCCCCGGGCGCCGCGGGCGCCGCACCGCCCTCCGCGGCGACGACGCCGTCATCTGGTGGCAGCAGCGCGCCCACCGCAACGGCATCGACCCCACCCTCATCCTCGACAACCCCAACCCGCCCGTACTCGCCAGCCGCAACGGGGCCCAGCGCGCCAAAATTGCTTCGGTGAGGTTCGAGGGCATCGCCACCATCACCGAGCCCACTGCCCTCCGCCACGCCATCACCACCGGCATTGGCCAGGGACGTGCCTACGGCCTCGGCCTTCTCTCCATCGCCCCCCACCAGCACTAACGAAATGGCAAAGCGCTCGGGAAGATGCAGGTCGCGAAGG # Right flank : ACGGGCTCCCGGGTTGAACCAGGGGCCGTACCAGTCCGCTCTGCGTTCGCGGAGAAGGTGCAAATTCATCCCACATCTGATCGGAGAACTACCCTGATGCGTCCGCCTGTTGACCATCGACTGTGGGGTAAATGGAGTGGTTTGGAGGACATGGGCGCCCCGTACCCAGTGGTGTGTCACCTGATCGACACCGCGATGATCGCTGGTCGCCTGTGGGACTCCTACCTCACCGCTGGTCAGCGACGCGTCATCGCCGCCGGGTGGGGCGTGAGCGAGGAGCACGCCCAGCAACTGATGATGTTCTGGGCTGGACTCCACGACCTCGGGAAACTATGTCCGTCGTTCCAGCACCAAGCCCCCGAGGCCACGGCCGGTCTCCTTGACCACCCCCACTACAAACCACCAACGGACGACAGTGCGATCAAGCACGAGAGGGTCTCGCACCTCACCACCCCGGCTCTCCTGGTCCAGCTCGGCTACCCCACACATGGGCGTCCGCT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCTCCGCGCAGGCGGAGGTGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCGCTCCGCGCAGGCGGAGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.80,-11.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 52934-56155 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLIN01000001.1 Streptomyces caniferus strain NBRC 15389 sequence01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================================================================================== ================== 52934 28 82.1 33 .C..A.......T.C.......C..... GCTCAGACTTCCGGGGCTGTCAATACCAGGACC 52995 28 82.1 33 ..G.........GGA.........T... GGCCGGTGAGCATCTCGGCCTCCACTCGCACCA 53056 28 75.0 33 .CGA........GGA.....A....... GATGTACGCCCGCTTTCCGAAGGGCGCTGGTAG 53117 27 78.6 29 ..AT.T................C.G..- GAAAGCACCGCGCTGCAGACAGACCTTTA C [53139] 53174 28 78.6 118 .CG......T...C....A......T.. GAACCGCGGGCACCACAGCAGCACCGAGGCGGCATGGGCGGGTTCGCCCTCCAGGGGCGGAGGCGCTCTCCGCTCAGGCAGAGACCAGGGAGGGATCGGGCGGGTCGCGGCGGGATTC 53320 28 82.1 33 ..G..........T......A.A.G... GTACGCGCTGGTCATGCCGCGCTTGATCGAGGC 53381 28 89.3 33 ..G.....................GG.. TGAGCCGTGGACGCCCTATAAAGCATACTTGCC 53442 28 89.3 33 ..G........C.............G.. GCCGCGACGTGCTCGAAGCCTAGGTACAGGCCG 53503 28 75.0 8 ..G........T.....T.C..G.C.G. GCAGCCCG A [53520] Deletion [53539] 53540 28 85.7 33 ..T..........GA..........G.. GGTGCGGGGCGGCTGGTTGTCGGCGTCCAGCCG 53601 28 89.3 33 ..G......A...............G.. GGCGGTAGGCGGCGATTGCCTCGCGTGCAGTGT 53662 28 85.7 33 ..G..........G...C......C... GCAGAACCCGCTCGTTCGGATCGCCATGCTGAT 53723 28 96.4 33 ..........G................. GGTCGCCGTTCTCGGCGGCAGGGCCCGATTCGG 53784 28 85.7 57 ..G........A.GA............. GGCCCAGCACATACCCCACACGAGGAACACCACTCGGTGCCGGGGGGTAACGGGTAC 53870 28 89.3 33 ..GT...................A.... GGTAGAAGCGCCCTTCGACCTCACCGAGACCGA 53931 28 82.1 33 ............AGA...T......C.. AATCCGGCACGGGTGGTCCGAGGAGATCACCCG 53992 28 64.3 33 ..GG.....TAAAGAAT........... GAACAAGGCGTCGATCGCCGTGGCCCGGACGAC 54053 28 82.1 33 ..GG.........GA..........T.. GGGTGATCAGTGTGAAGGGTTGCCGCATCGCCG 54114 28 82.1 68 ..GG.......C.GA............. GCGCCGGGTCTCGCGGCTGATGGGTGATCACTAGTGGTCACCGCGCCGGTCCCGTCTGCGATGATCTT 54210 27 89.3 122 ....................-....G.G GTCGCGGGCCGGCCAGTGCCTGCGAGAGGCCGTGCGGCCCCGGTAGATTCAGGCGGGTGCATGACCGGCGTTCCTTGAATCACGAATTGGCAAAGCACTCCTAACGCCGCAGGTCGCGAAGG 54359 28 100.0 33 ............................ GGTCGGGGCACCATCGGCAGGCGGCTCGATCTC 54420 28 100.0 33 ............................ TCTGTGGCCGCCACGAGAGCGGACGTCACCAGC 54481 28 100.0 33 ............................ CGACGCAGCCAACCGGAGGCGCACTGCCGTTTC 54542 28 100.0 33 ............................ ATAAGGGGGTCGAGCGCAGGTCCACGGCCTGCG 54603 28 100.0 33 ............................ GTCCGCGGCCATCTCGGCAGCCTCGTTGGCCAG 54664 28 100.0 33 ............................ GAAGTTCGGGGGGTGGCGGATCTCTGCGGTTGA 54725 28 100.0 33 ............................ ACGGGGTGACAGATCATGCTTGACGCCCTGCTC 54786 28 100.0 33 ............................ CGTCGAGTGCCAGACCAGCCCCAACCCGGGCCT 54847 28 100.0 33 ............................ GGTGCAAGCGGCGGGGGCGGCGCCCACGGTGCG 54908 28 100.0 33 ............................ GCATGCGGGGATGGTGGCGGCGTAGGTGGTGGC 54969 28 100.0 33 ............................ GCCGACAAGCTCGAAGCGATCCTCGTCCTCGCC 55030 28 100.0 33 ............................ GGGACTGCGAGCTTGCCGACGTCTTCTGCGGTG 55091 28 100.0 33 ............................ GTCGGCGATCAGGTCGGCTACGCAGAGGGCGTC 55152 28 100.0 33 ............................ GCTGCTGCTGAAGATGGTCCAGAGGTTGTACTT 55213 28 100.0 33 ............................ GTGTCTCAGCGGCCACTGACAACGGAGGCGGGG 55274 28 100.0 33 ............................ GTTGCTGGGCTCGGGCAAGGTACCCGCTCGCTA 55335 28 100.0 33 ............................ GATCGATGCACCGGACCGCGGCGAGTCGGGCCA 55396 28 100.0 33 ............................ GGACCTGCGCGTCGACTCCCGTGTGCGCGGCTG 55457 28 100.0 33 ............................ GCATCCGGGTATCCGGCGTCCGGACGATCGGGG 55518 28 100.0 33 ............................ GCACTGCGGCTACCGGGGCGGGCGGCTGAGGGT 55579 28 100.0 33 ............................ GCCGATCGCGCGGAGGATGCGGGCGTAGGTGTA 55640 28 100.0 33 ............................ GGCGGCCAACTACGGGAGGGGGGTGGGCAGCCT 55701 28 100.0 33 ............................ GATCCCGACGTTGGCGCCCGGACAGGCTGTGTG 55762 28 100.0 33 ............................ GTGGCACCCCACCACCGTCAACCGGATGCTCAA 55823 28 100.0 33 ............................ GCGAAATGGCACTATGGGCGTCATCTTCCAAAT 55884 28 85.7 33 ..GA.........GA............. GACCAGGTCGCCGGCGCGGACGTCTCCCGGCTT 55945 28 85.7 33 ..GA.........GA............. GCTGGCCCGGTACAGGGGGTCTTGCATGGTGCC 56006 28 85.7 33 ..GA.........GA............. GCGTCTGGTTGCCGAGGGGTGTGACAGGTACCA 56067 28 100.0 33 ............................ GGTGCGGCGCCCGATGCTCCCCGGGGAGAAGAC 56128 28 75.0 0 A.GG................A.G...AA | ========== ====== ====== ====== ============================ ========================================================================================================================== ================== 50 28 91.9 37 GTCCTCTCCGCGCAGGCGGAGGTGAACC # Left flank : AGGGTGCCGAGGTGAGAGGCGGCCAGGGCCTGCGCCGCGGGCACGAGGCTGGTGACGCCGGGTGCCACCTCCGGGGTGGCGTCCGGAGCGAGAGCGGCGAGTTCGGCTGGGTCGGCATCACGACGCCAACTCATCGGCACGCACGGCGACATCATCACGTTGAACACAGAGTAGAACTCCAACTATGGCGAGTACCCGGAAGTTTCGAATGCATGAACGATCAACTGGGCTGCAATTGCAGGAATTTGACGCACCATCTGATCAGCGCCGACATCAACATAGGGTTCGGCGAATCACCCGTGCAAGCGTTCTCGGCAACTGTCAGTAGGGCTGTATATGGTGGTTGCGGAGGCGCTCCGCCCATGCGAACGGAGCCCGTTAGGCGACCCGAACACGCAAGCCGCGACGTCGTCGGTCCTGCTGGCGCTGACCTGCCCATACGGCGTCCGAAGATTGATAATTGAATGGCAAAAAGCCTCAAACATCGCAGGTCGCGCAAG # Right flank : ACTGCTGGACGCCGTCGGGATACTGCCGTCATGGCCGTCACCAAGCAACTTGCCCGCATCTCGGTGGAGTATCTCGCCGACTGCCGCCAGTCAGCCAGCGAATCGCCGGATGGAGATCCCCACTGGGATCCACAGCCGGCGGACGTCTTGGACCTGGACTGGGCACCAATCTTGCTGGAACGGGCCTGCGAACTGGCGGGACTCGACGACGTCCACCTGAACGCCCTGCGGCAGGCCACCGACGGCGACTCGGCGATCGACCTGGGCTTCCTCAACACACACCCGCATGCCATCGGCCCCTTCGGACCTGCTCCCACGGCCCTTTCAGCAGCTCAAGCCGCCCACGTCTCCGAACTGCTCGTGCATATGAACATGCCGGCCATACTGGCCGCCCTGCCGGCCGACGACACACAAACCGCTTCCTTAATCGGTTACGGAGCGGACAAGATCGCCGGAGACCCGAGGAAGTACCTTCTGAAGCACTTCAATGCCCTGCGCGA # Questionable array : NO Score: 5.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:-0.39, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCAGGCGGAGGTGAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCGCTCCGCGCAGGCGGAGGTGAGCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.80,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [85-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 56760-59686 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLIN01000001.1 Streptomyces caniferus strain NBRC 15389 sequence01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================================================================================================== ================== 56760 29 82.8 32 ..C..........AG.........AA... CCATCTTCGAGCCGGGGAGGCTCTGCGGGATG 56821 29 82.8 32 ..C..........AG.........AA... TGGCGGCTCTCCGCCGTCAAGCGCGGCGAGAC 56882 29 82.8 32 ..C..........AG.........AA... CCGTCACAGTCCCCGCAGGGCCCGGCGGCGGC 56943 29 82.8 32 ..C..........AG.........AA... CTAGTGGGCTAGATGTACGTTAGGTAATGATC 57004 29 82.8 32 ..C..........AG.........AA... CTTTTCATCACGCTCGGCTCGGGTCTGATGGT 57065 29 82.8 32 ..C..........AG.........AA... GCACGGTCCCTCGACCTCGAGGCCATTGACCT 57126 29 82.8 32 ..C..........AG.........AA... CTGTCCGAGCGAACCGTCGAGTACCACCTCGG 57187 29 79.3 32 ..CT.........AG.........AA... TTCGGACCGTGATCTGCGGTGACCATGTCGTG 57248 29 79.3 32 ..CT.........AG.........AA... TCCGTCAACGTCGGCCACAGCCACGGCCGCAC 57309 29 79.3 32 ..CT.........AG.........AA... TGCCAGTCGGCAGGTTGGGGGTTCATCCGGAT 57370 29 79.3 32 ..CT.........AG.........AA... TGGCTGAGCGGGCACGCCCGCATGCCCGCGTG 57431 29 79.3 32 ..CT.........AG.........AA... AGCGATCCCTGCCCGTCGAAGTCGTCGACGCT 57492 29 79.3 32 ..CT.........AG.........AA... TCCGCGGCCGATGCTCGGGACTGCCAGGCGTG 57553 29 79.3 33 ..CT.........AG.........AA... TTGCCGGTGTACCGGGGGGCAGTGCTTGGCGCT 57615 29 82.8 32 ..C..........AG.........AA... GGCGCCGAAGCGTCCGACCTCGCGAGGATCCT 57676 29 79.3 123 ..C..........AG....C....C..G. TTGCGTGGGCCGGTCAGTGCCTGCGAGAGGCCGTGCGACCCCGGTAGATTCAGACGGGTGCATGACCGGCATTCCTTGAATCACGAATCGGCAAAGCGCTCCTAACACCGCAGGTCGCGAAGG 57828 29 96.6 32 ............................C GTCCCGGGCGGAAGCTCGCTCCACGAAGTCGC 57889 29 100.0 32 ............................. CCGCGCCGCGCACCGCGAGCGCCGTCATCGTC 57950 29 100.0 32 ............................. GTGTTCGCGGCCGTCAATGCCGGCGGTTCGGC 58011 29 100.0 32 ............................. CCAGGAGACGCCCTGCCTGACAGCTCCAAGAA 58072 29 100.0 32 ............................. GCTGTCGCGGTGCAGGTGCATGCCGCCGAGCT 58133 29 100.0 32 ............................. CCGACCCGGGCCCCGCACCCCGGACCGAAAGG 58194 29 100.0 32 ............................. CGGCCCAGGTCGCCGTCGAGCTGAGGGGTGCG 58255 29 100.0 32 ............................. ACGCCGCAGTCGAACCCCTCGGCGCCGTGGAA 58316 29 100.0 32 ............................. GGCAAGGGCCGCGGCCGCCGAGGCGGATACCC 58377 29 100.0 32 ............................. ATGGTCTTCGCCGATAACTTGCTCGCTCGTCG 58438 29 100.0 32 ............................. TCGAGAGTACCCGCGTCAAGTACATCGAGGCC 58499 29 100.0 32 ............................. ATGTCCTCGGCGAGCGCGGCACCCTCGGGCTT 58560 29 100.0 32 ............................. CATTCCCCAGTTGCGCTACGAACGCCGGGTCA 58621 29 100.0 32 ............................. ACCTGAAGGCGTTGATCGGCCCCGAGTGGATG 58682 29 100.0 32 ............................. TGGTCGATGGCGCGCACGCATGCCGCGGTGTC 58743 29 100.0 32 ............................. ACGCCTCATGGTGGTGGAACCCCCTCACGGCG 58804 29 100.0 32 ............................. AGGCGCGGGCGCGAGCCGAGGCGGACCGGATC 58865 29 100.0 32 ............................. GCCCTGGGCGTCGGCGCGCTGAAGATGGCCCA 58926 29 100.0 32 ............................. AGATGTCACGCGCCGCCCCACAAGACCGGCCG 58987 29 100.0 32 ............................. CGGGGCCGGCTGGTGTCGCGGTCGCGGGCGGA 59048 29 100.0 32 ............................. TTCGGGCTGTCCGGGCAGCGGGCAGCGGTCTA 59109 29 100.0 32 ............................. GAGCCGTCCTTGCGCTCCCACCAGGAGACCGC 59170 29 100.0 32 ............................. TTATCGGCGAAGCACATCTTCCGCGCTGCCCG 59231 29 100.0 32 ............................. GACCTGCGCTGGGCACAGCTGCACCAGGTGCT 59292 29 100.0 32 ............................. CTGCGGGGTGGCCGCGATGACCTACGAGACGC 59353 29 100.0 32 ............................. GCCGCGTGGCGGTACGGGAGAGCCGGGTTCTC 59414 29 100.0 32 ............................. CACCACCATCGCCCTGTCCGCCGCGGCCGCCG 59475 29 96.6 32 .........................A... GCCATCGGGCTGGACGCGGTGGGTGCCGTGCT 59536 29 96.6 32 ....G........................ TACTCCCGCACGGTCGGATCCCACTTCTCGCC 59597 29 93.1 32 ........................AA... TGCGAGGTGTGGCTGATCGTCGACGGGACCGT 59658 29 86.2 0 ...G.............A......AA... | ========== ====== ====== ====== ============================= =========================================================================================================================== ================== 47 29 92.9 34 GTGCTCTCCGCGCGAGCGGAGGTGGGCCG # Left flank : CCGGATGGAGATCCCCACTGGGATCCACAGCCGGCGGACGTCTTGGACCTGGACTGGGCACCAATCTTGCTGGAACGGGCCTGCGAACTGGCGGGACTCGACGACGTCCACCTGAACGCCCTGCGGCAGGCCACCGACGGCGACTCGGCGATCGACCTGGGCTTCCTCAACACACACCCGCATGCCATCGGCCCCTTCGGACCTGCTCCCACGGCCCTTTCAGCAGCTCAAGCCGCCCACGTCTCCGAACTGCTCGTGCATATGAACATGCCGGCCATACTGGCCGCCCTGCCGGCCGACGACACACAAACCGCTTCCTTAATCGGTTACGGAGCGGACAAGATCGCCGGAGACCCGAGGAAGTACCTTCTGAAGCACTTCAATGCCCTGCGCGAGTTCTACCTCGAAGCATCGCAAAGACACCTGCTCATCGTGCTCTGGTGGGACTGACCCAGGCCCTCACCCCAGCCCACCACTCCTAGCGCCGCAGGTCGCGAAGG # Right flank : GCCGGGGGTCAGCGAGCGCCGCCGTTGGCGGTGGCCTGCAGTGGACGGCCGCTCGGTCGTCGTGCTGAAGGGCGATATTGCTGTGAGTTCAGCCCCTCTGGCCCAGGACCTCGTAGGGATAGGTGGTGGTGTAGTCCTCTACGGGCATGGCGGCGTGCCTGGCGTAGTCGGCACGGTCGCGTTGGTGTGCTTCGGTGAGGGGCGGGTGCTCGGGCGGGCTCTGAGGCGCAGGCCAGAGCTGGAGGAGGTGGCGCTCGCCCCGGTCACCGAGGCCGGGCTCGCGATTGTCCGTGTGGCAGTGCAGACGCAGGCGCACCCAGGCGCCGCTGTCGGGGGCTGCTGTGATGTGGAGGGGTGGCTGGTCGGCGGGCCAGGCGTCGAGGATGTCGCCGGCGTCGAGCGTCGACAGCTGCACGGGTGAGGTCGTGGTCTGGAGGCTGAGTTCCTCAGCGGGGTCCCAGTCGGGATCGGTCTCGGGCGCCGGCGGGCTGTCGTGCACC # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-0.16, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGGGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGGGTCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-21.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 63412-64660 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLIN01000001.1 Streptomyces caniferus strain NBRC 15389 sequence01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================================================================================================= ================== 63412 30 90.0 58 ......G.................G....G AGCGTAGTTCCTCGATGACGATCCCGGGGTAAGCATGGGCCGGATCTACGCCACCCCC 63500 30 90.0 31 ...G.....................G...C AAACGGCCGCCGGAGACGTCCGTGGAGGCGC 63561 30 90.0 31 ...G....T....................G AGACCGCCGATGCTCTGGTGTCGGCCGAGCA 63622 29 83.3 27 ...............-...C....GG...C GGCAGTCCTCAATGGCATTGTGCGGGC A [63635] 63679 30 56.7 121 C...C.AT....GCGA.AA......G.G.C CGTGCGCCGGTCAGTGCCTGCGAGAGGCCGTGCGGCCCCGGTACATTCAGGCGGGTGCATGACCGGCGTTCCTTGAATCACGAATCGGCAAAGCGCCCCTAACGCCGCAGGTCACGAAGGG 63830 30 100.0 32 .............................. TCTGGCCCGCCAGCTCCAGCCCGATCTTGGCG 63892 30 100.0 31 .............................. AGGGGCAACGTCCGACCCGAACGATGCCATC 63953 30 100.0 31 .............................. CGAAATGGTCTGCGGCCAGATCAGCCATGAG 64014 30 100.0 31 .............................. TCACGATCTGCGACGACACGGAGCTGCGGGC 64075 30 96.7 31 .............................G TCGGGGACGGCCCGACCTACCGGTGGTGGCT 64136 30 96.7 31 .............................G TACTTCGTCAACGGCCAGCGCACCTCGCCGG 64197 30 96.7 31 .............................C CCCAGATGCCGCCGGCCGCGGCCCACACCCC 64258 30 96.7 31 .............................G ACAAGCTCTACGGCCGCCTGACGAAGGGGGA 64319 30 90.0 31 .CC..........................A GTCTGGCCCAGGATGCCACCCGCCGGATGTC 64380 30 86.7 31 ............T.G..........G...G TAGGTGTAGGCCGCATACTCGGTGCCGGGCG 64441 30 90.0 31 ............T.G..........G.... ACCAGTAACGGATGCAGTTTCAGATTCAGCA 64502 30 83.3 31 ..........G.T.G..........G...G TTCAGGTCCTTCCCATCGACGACATTGACGG TGT [64512] 64566 30 86.7 31 ....C........AG..............C GAATTCGCCGGTCCCAGCCGTTACCTGGGGT 64627 30 76.7 0 ...........A.AG.......G..G.A.C | AGC,C [64646,64652] ========== ====== ====== ====== ============================== ========================================================================================================================= ================== 19 30 90.0 37 GTGCTCTCCGCGCGAGCGGAGGTGAACCGT # Left flank : ACCATGGAAATCTCCGAAGAGCACCTGCGCGAGCCGGGCCTGGTCGTTTTCGACATCACCGCAGTCGACGAAGCGACCGCTACCGAGGCCGCGACCGCGCTCGGCGGGCTGTGGCTCTCCTCGGGGCCCTCCACACCTTGGCGCACCCCGGGGGAACCCGGCGTAACGGTCCGCGCCTACGCAGATCTTCGCCGCGGTCCGTTGCCCCGGGGCGGTCATGGCCCCAGCACCCGCTGAACACTCCGCCGCCAGCCCTCAGCAACGGACGGCCACCGCTTCGGCTCCGGCTCGACGCAGCTTGCGGGCCAGGCGCGTCACCTCGGGCAAGGTCCCCGAGTAGGCGCGAGGTCGCCAAGTACCGGTTGTCCGGCCCAAGAAGCGCAGACGAAGGTGCCCGCGGTGGGCACGCCCCTGGTGTGCCAGCCCAGCACATTCAAGGAATGCGCCACCAGCATTCACAGGATCACGCAAAGCGCTTCCAACGTTGCAGGTCGCGAAGG # Right flank : CGTTGCTTCTCTTGCACCACAGCGCAAGCCGGGGAACTGCAGCGCCGCACCATCACCCTCACTCCCGCTGAGTCCGCGATGGCCTGGCTGCACAGTCGCCTGGCGAGGGTCTCTTTCGCCGACGTGCCCATGACTGGCCTACTCCTTCGATGTCCAGACGAGGAGCGCGGTCCGGACGCCTTCGACTCCATGGTGGATACCGAGCTGGCCCGCCAAGGAATGCCGGTACTGGGCAGGCTTCCACAGCCTCCTCGCCGCAGCCCGCACCGGACGGTGCGCGACCATCTCCCCGCAGAGCAGCGAGCGTTCGTGATCGAGCAGGGCGCCCAGGTCCGTCGGGGCCTTGGCCCAGCGCGAGCGGACGCAACCGTGTTCCTCACTGCCCTGCGTGAGTACTCAGGGTTCTGATACGGGCAAAGCACCGCGCCCCCGATCCGGTCCGTGGCCGCGTCGGGGGCCAGAACTGACAATGCCCGCCAGAGTCTTCAGGTATCTGCGCC # Questionable array : NO Score: 4.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:0, 6:0.25, 7:-0.52, 8:1, 9:0.33, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAACCGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGAACCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [25-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //