Array 1 167-1660 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWA010000096.1 Dolichospermum sp. LEGE 00246 NODE_148_length_14050_cov_40.5589, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ======================================================== ================== 167 23 100.0 47 ....................... TCGCCGGGAATGTTGCACGAAGTGAGAGTCTATGTTTCCGCATATCT 237 23 100.0 56 ....................... CCGTCCTTTCATTGTTGCCTGGGCTAATTGACGTTGGCGATAGTTTCCGCATATCT 316 23 100.0 51 ....................... GAATGGTAGTAGTAGAATTCATACTAAGACTTGAAACGTTTCCGCATATCT 390 23 100.0 51 ....................... TTCTTCACCGGATATTAAACAACGTCCTCGCGCTCCTGTTTCCGCATATCT 464 23 100.0 52 ....................... TTTTGGGTTATTAAATAACGGTACTCGCAAGGCTTGGAGTTTCCGCATATCT 539 23 100.0 52 ....................... TATTTACGCCATCGGACTGGTAAGTAATGTTTGCTTGGGTTTCCGCATATCT 614 23 100.0 50 ....................... AACCTCCTTGTTCAACTAAGTCTTTAGCTTCTTTTAGTTTCCGCATATCT 687 23 100.0 51 ....................... TTTATGGCACTCAGCCCCAAGGCTTTCACCATACTTCGTTTCCGCATATCT 761 23 100.0 51 ....................... CTATATTAGCCTCAGCAACTTGTTCTAAAACTGCTTGGTTTCCGCATATCT 835 23 100.0 47 ....................... AACATCGAAGGAGGCGCACTAATCGCAGCTTTGGTTTCCGCATATCT 905 23 100.0 47 ....................... AATCAGATCAACTAGTCAGAGTCGAGCAAACCGTGTTTCCGCATATC 975 23 87.0 51 T.AT................... CAAACAAAAAATCTCTTAATGTGTACGAATTAATTGAGTTTCCGCATATCT 1049 23 100.0 49 ....................... AACATTTTCTTTCTTCTTTCCTGGATTTCAACATGGTTTCCGCATATCT 1121 23 95.7 52 ..................A.... TCGCAAAGAACCTGAATCAATCCATTGCTAAATTCATAGTTTCCGCATATCT 1196 23 100.0 48 ....................... TAGAAAGAATTTCTGCGATCTGCTTTAGTTTCTCGTTTCCGCATATCT 1267 23 100.0 51 ....................... ATGGGTTGAGTCAGGGTAATTTGGCGGAATGGTATAGGTTTCCGCATATCT 1341 23 100.0 52 ....................... TTTTAAAACAAGCGATCGCACCATGTTTAGTTTCTCAAGTTTCCGCATATCT 1416 23 100.0 50 ....................... TACAGTTATGAATATTTTTGGGATGAGCAGGAGTGTGTTTCCGCATATCT 1489 23 100.0 50 ....................... CAAAATAATGCAAGTCCGTATATCCTTCCAAAAGATGTTTCCGCATATCT 1562 23 100.0 53 ....................... ACCACTTACCCAAAGCGGGTTGAAGAATATGGTTCGGGAGTTTCCGCATATCT 1638 23 95.7 0 ..................A.... | ========== ====== ====== ====== ======================= ======================================================== ================== 21 23 99.0 51 AATCCCCGCAAGGGGACTGAAAC # Left flank : TCGCCAAACAGCCAGAACCTTGACAACTAAATACTTTCAGCGTTTCATTAGTTTCAGTTTGTGCTTGACCCGAAGCCTGAAATAAGGTTTTTTGAGAGGTCCGCCAAAATCGTCTCTGGATTCCGCCCCCAGTTTATGTTTCAGACGGCGGGGTTTCCGCATATCTA # Right flank : CGAGACACTGCGATCGCTTCCCTAGCCGCAAGCATCGCTAAATAAATCATCAAATCCTAAAACAAATTGAGAAATTCCGTAACAACATCTATAGGACGATTATAACATTCACCAGCATCAAACCTAACGGTACGAATACCATCACGTAATAAAACCCTATCTCTTCTGTAGTCTCTAGTTTTTTGTGATGCTTCCTGGTGGTGGACTCCATCAACTTCTAGAATCATACACTTTTGTTTATAGAATACCAAAAAATCTATTTCTACTCTTTCCTTTGCTTGATTATCACTATTAGAAATAGGTAAATCAGTTAAATCCATATAAGCCCGACTATTAGCAAAGAATAAAATCCGTTGACTATGTAAGGCGTGGGCTATTCTTACTTCTGTTTTTGACCTGAAATTTAAACCACCCCATTGATATTGGGAGTTACTATCATCTGATGAATTTTGACTTTTAACTAAACTAATTTCGATTTTGATATGGCTTAATACACTTGG # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.28, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 13231-12985 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWA010000099.1 Dolichospermum sp. LEGE 00246 NODE_152_length_13900_cov_41.2226, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================= ================== 13230 28 96.4 45 .............G.............. TCACTGTTAACAAATTAATGTCATTTTTAACTAATGTTTCAACAC 13157 28 100.0 45 ............................ GATTGAGAATAAAGGCAAAGAAAGATCACTAGAATAGTTTCAACA 13084 28 100.0 44 ............................ ACAGAGAGTCATATCTTTTCCTTGTTTGATGTATAGTTTCAACA 13012 28 92.9 0 .............G.............T | ========== ====== ====== ====== ============================ ============================================= ================== 4 28 97.3 45 CCCCTCCCGGAGTCGGGCGGGTTGAAAG # Left flank : ACACTGATACCTTCCCGAACTCAGAGGTGAAACGCTGCTGCGGCAACGATAGTTTGGGGGTAGCCCCACGTGAAAATAGCTCGATGCCAGGTTTATTATTCCATACAACAAAGCCTCCTCTATTTATTTAGTGGAGGTTTTGTTTTTTGCTAGATATGATATAGTTGGTAAGCTGTTGTGCAGCTTGATTGTATCATAGGATGTTAACTAAATAAGCGATTCCTACGGAGCGCTTCGCTAGTGTGTTAATTCTGAATCCCTTATCCTATAAGACTTCATGCACAAAATATGTCGTCATATTTTTATGAGAACGTGCCTGGAACAGATGCTTTCGGTGTAAACTACGGTAACACCAATAATTTTCTGGACAATCCCTCCAAAAATACACAGAATTAACACACTAGCTAACCCCTGATAAATAATATCTAACCACACACGAATTACAGCTTTACCTTCATCCAGGGATGCGATCGCTCTATAAATTATCAAAAGTTTCAACA # Right flank : GCGTTAGTTCAAAAATACAATAAAATATTTAGGAATGAGGATTAAATAAAGTGCAAATCTTGATGGATGTAATTTAACATTAGGTTAGACGGTCGTTATCAAGAATTGTAAGTTAATAAATCCACATTCCTTAGGTGGGTTGAAAGATCAGTAGGTCGTGAGTTTAACTCTGATAGATTTTTATAATAAACAGAATCCTGATTTTGAGCGTAAAAGACAATTAATTTGGCAATACGGACATCAATTTGTCAACGCGGTCAAATAATTCGGCAAGTGACAGCACAACATCACTATTAACTCAACTATCTGTTTAAAAGTGCGGATAAAAGGACTTGAACCTTCACTCCTTTCGGAACTAGAACCTAAATCTAGCGCGTCTGCCAATTTCGCCATATCCGCATTAATACCTTATGTTAGCACAACAAATTATTTATGGCAATAGGCAAAAGAGTCAAAATTTCAGTCCCAATTTTAAATTAGGGTATGGGATATTGGTGATA # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCTCCCGGAGTCGGGCGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 8624-5731 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWA010000013.1 Dolichospermum sp. LEGE 00246 NODE_22_length_29605_cov_36.3267, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 8623 37 100.0 35 ..................................... TGGGTGAGAAGCTGAAGGGGCGGCTACGGTCGCGG 8551 37 100.0 41 ..................................... AATTACTCCAAAGGGATCACCTGACCTACTTTATAGCTAGG 8473 37 100.0 35 ..................................... GTAACACCAAGCTTTTTATTACCTTTAGCTTTAAG 8401 37 100.0 36 ..................................... TCGCACCAAGGCAATAGATTCTGAATTGGGAGTCAA 8328 37 100.0 36 ..................................... TTGGTATGGGCTGGGGTGAAGTGGGAGGATGATCCG 8255 37 100.0 39 ..................................... TTCTCTCTTGACAATCTATTATGGATATGAGAATATAGA 8179 37 100.0 35 ..................................... CCTGCTTATTTTTGTACTGATTCTTCCTGTGTTTT 8107 37 100.0 36 ..................................... AAGATGCTTATATATTGTTGCGATTGTTGCGATCAT 8034 37 100.0 41 ..................................... GAGCATTTGGCGGAAGAAAGGCGCAAAAGAATAGAAGTGAG 7956 37 100.0 33 ..................................... ATTGTATTCCCGGATTGCAATTATTTCTCCGCT 7886 37 100.0 36 ..................................... AACGTATCTCGTAAGATACCATCGCCAGCACTGATT 7813 37 100.0 35 ..................................... ATTATACCAGTGACTATTTCTTATTCAAAGACGAA 7741 37 100.0 39 ..................................... AAGCTCGGAGTAGTGCCAAAGTTTTGCTTTTTTATCCTA 7665 37 100.0 34 ..................................... CATATGGGAAAAATGTAATTTAATTTGTGGTAAA 7594 37 100.0 35 ..................................... ATCCGATTAAGACCTAACAATCTTGTAAAGCTGCA 7522 37 100.0 36 ..................................... CTAATGCTGCGTTCATGCTTGCCATAATGGGCTTTT 7449 37 100.0 36 ..................................... TCGTAACCTATCCCTTTGTATGCACGGATTAAAACA 7376 37 100.0 32 ..................................... AGATTGGGCTGTAGTTGAGGTTGTAACGGGTT 7307 37 100.0 34 ..................................... TGGGATAGGTTCAACATGGTCTTTTTGTCGCCAA 7236 37 100.0 40 ..................................... AAGATAGATTATTCTCTATAGTAGTCAGATTAGGATTGAA 7159 37 100.0 38 ..................................... TAGAAATAGACCACCAACTGGAGGGGTAATACAAAGGA 7084 37 100.0 35 ..................................... TTTTTCCTCGGCTTTGTTTCTATATATATAATATA 7012 37 100.0 42 ..................................... CAAGATACTTTTTATCAGTTCCAGAAAAGTATCGGATTGCAA 6933 37 100.0 32 ..................................... GAACTCTCACAAATTTCGCAGAGAAGAGAAAG 6864 37 100.0 34 ..................................... AGCCGACGCTAAACAGGAAATTAGAAACAACTGG 6793 37 100.0 36 ..................................... TTTTGTCACCTGTGGGGATAACTCCCAAGTCAGAGG 6720 37 100.0 37 ..................................... AATTGTGAGACGGATCTACATTTGGCGATCGCTCTAA 6646 37 100.0 37 ..................................... CATTCCAAATTTAAACGCATCAGTTAAAAATGAGATA 6572 37 100.0 40 ..................................... CTGCTCTGACTGCCTTGACTGCTGGTGCTATTTATTGCAA 6495 37 100.0 34 ..................................... ACTGCTGCGGTAACGGATATTTCTGCCACTATGA 6424 37 100.0 33 ..................................... CCTTAACCGCAGCCAGTACATATTTACTAACCG 6354 37 100.0 36 ..................................... TCAATTATTTGTCCACTTTCACTGAGGAAAGATTTA 6281 37 100.0 32 ..................................... CTCTGGAGATTCCTTATGCCTTACGTGCAATG 6212 37 100.0 35 ..................................... TGATAGTTGCAATATCCGTTATCTGTAATCTGCAA 6140 37 100.0 35 ..................................... GGCTACGTTTATAGAAGTTGCCCCGATAGATGCCG 6068 37 100.0 41 ..................................... GTAAATTTCCTTATATGTACAGGCACGGTTATCTCCCACAG 5990 37 100.0 37 ..................................... TTCACTATTTACGGTTGGGGATGGCAACATAGGAAGA 5916 37 100.0 35 ..................................... ACAGCCTATACAGCTAATGATGTTTACGGGAACGA 5844 37 100.0 40 ..................................... TTTAAGGGTACTAGGTTAGAGGAAATCAAAAACTTTTATA 5767 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 40 37 100.0 36 ATTGCAATTTCATTTACTCCCTATTAGGGATTGAAAC # Left flank : ATGAATGTTGTTGTTTCTTACGATATTTCTGAGGATAAACGCCGTACTAAAATCCATAGTATCCTCAAATCCTATGGACAATGGGTGCAGTATAGTATTTTTGAATGTGAGTTAACTGATACTCAATATGCTAAGTTGAGATCGCGTCTCAATAAACTCATAAAACCTGAAACCGACAGCATTCGCTTTTACTTTCTTTGTGCTTGCTGTTTTGGTAAAATAGAAAGAATCGGTGGTGAACAGCCCCGTGATCAGACGATTTTCTTCGCTTAATGCGCGGGGGGGTGGGTGTAAAAAATTCAATTTCTCAAAAAATGCCTGAAATCATGTCTACACAAGCTTTTCATGCAGTTCATGGAGTTCACCCATCCGCGCACCTTGCACAGCAGGAGTTTCAGCTATTTTACTCCTTGACACTTTTCTTGAAATGGATTATCATAAAGGCATCCGCGCAACTGAACCTTGAAAACTACATATATATAGGCTTTCAGCACCCCGCT # Right flank : GCTACAGGCGTAAAATTCCATCACACCAGCCCCCATGAATTGCACTATTGCCAAAGCCCTGAAACTTTATTGATATCGTCACGATTTTATTGGGTTTCAGACATATTTTGGAAAATTGGCAATAGTATTGATCTAAAGACATAATTCAATTTATGACCCTAGACTCAAGCATTGGTCTGACCAATATAGCAATATTGAATCATTTAGCACTGACTAATGAGGTTCATTATGATTATCTCAAATCCAGTTGACAAAACCGCAAATATTAGTCTGCAAAAAGACACACTACTTATAGAATTAACTGCTGAAGAGTCTTCTAGTATTGTTGGAGGGTTTACAATTAGAAATGATTCAGGAGGTACAAGGCGTTTTTATAATTTAGGGGCAAATGTACCAGCACAAGTGCAAACTTTACAACCTAATACAGAAGGCACTTATGATGGAGAATACATTATATATAACACATCAAAGACCGGATTTGAACCTGTATTAGTAAAAGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCATTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 6-1477 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWA010000201.1 Dolichospermum sp. LEGE 00246 NODE_323_length_9204_cov_23.1444, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 6 36 100.0 39 .................................... TCATGCGTTTTTCTTGTATTGATAATCATTTCATTTTAT 81 36 100.0 40 .................................... TTATTAAATAAACAATAAACAATAAACTTTATGACTACTT 157 36 100.0 39 .................................... CTTTAGAAGAAGGGTATGTTAGAGGGCTGCTTAGGGCTA 232 36 100.0 34 .................................... AATAATCAAGTTTGTAATTAGTTAATTAAGGAGG 302 36 100.0 44 .................................... AACTAAGTCACCTGGACGGTAGGTAACGTTAGAGTCTTTATTAG 382 36 100.0 37 .................................... TTTTGTTCCTTTCTCTTTTCTTTTTTCTCTTATTAAA 455 36 100.0 40 .................................... TTCGCTTTGTTGAAGAAGCTTGTAGACTGCATAACCATGA 531 36 100.0 39 .................................... CAGTAAACTCAGCCCCTCTATACAAACTATTCTGAGAAA 606 36 100.0 35 .................................... GGTGAGAAGAATGCCCCAACGGATTGCAGAATTCA 677 36 100.0 43 .................................... CTTATAATAATAACTTTGCTTACAGATGCTTAAAGTCTTACAA 756 36 100.0 41 .................................... CTAAGGGAAGTTGGGAACTTTCTAATTCTTTTAATACTAAA 833 36 100.0 39 .................................... AATTCTTGATAGGTTGCAAAGAACTTCGCTCTTAGGAAA 908 36 100.0 38 .................................... GTGCACGCCTCCGCAGTATGACCCGCGTGACTGCCGTC 982 36 100.0 44 .................................... TACCTGTGTACAATGCCCCTTGCTCTAAAGCAGAGGTAAAAATA 1062 36 100.0 41 .................................... ACTTAGACCTGCCCGTCGCACCTTCCTACCATTTCTGATAG 1139 36 100.0 39 .................................... CCATAGAGAACCTTTGGCGGTGTGCTAGTGCTAACTGCT 1214 36 100.0 37 .................................... CAAAGAAAGCTCTATTGGCATTTTGCCTAGCTGTATT 1287 36 100.0 39 .................................... CATTCCTTCTATTAACCGCTATTTCAATTGACCCTAAAA 1362 36 100.0 44 .................................... AACCATGTTTGCGTCAAACTCGTTCAATTGATCAAACAGGTTAA 1442 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 20 36 100.0 40 ATCGCTTCTTTTATAAGAAGTGGAATTAATGGAAAC # Left flank : CTTTTA # Right flank : CTATTTCTATTGTTGGTTCAGCTTGCATTTGTGCAATAATCGCTTCTTTTATAGAAAGTCAAGATATGAGATCCCCGACTTCTTAAAGAAGTCGGGGATCTTTGGGTTTAGGATATTTTAAATTTCCTCATTCGCATAAGAAGTATTGAATAATCACAAAATTGAGATTATGTTGTTACACGAGATGTCAACAATATAACCAGATTGGTGAGGGAAATTCTACAATGTCAGAACAAAATAAAGATCAAGATCAAGAAATTTTACGTCAATATCTTGATTCAATTAAGGAAGAAGAAGAACGTAAAAAAGTACAAAATTTAGCACGCCTTTCTAGATTAAATATAGGGATTGCTGTTTTCCTTTCTCTGCTCATTCCCATTGGTGGATATTGTTATACCCGACGGTGGAAAGCATTTCTATGGCTTATGTGTGGTGGGGCTTTAATAGGGGTAGTAGTTGCTGGAAATTCTCGTAATAGTGAAGAAGCTATGGCACGAGCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCTTCTTTTATAAGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [6.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 167-1001 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWA010000244.1 Dolichospermum sp. LEGE 00246 NODE_386_length_8132_cov_27.9675, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ====================================================== ================== 167 23 100.0 52 ....................... ATAAGCGACAACATTCCCCAGGGTTTCAGTTTTACCTAGTTTCCGCATATCT 242 23 100.0 50 ....................... ACATTATCTTCTATTGACTTTAATAACGCTTTAAATGTTTCCGCATATCT 315 23 100.0 52 ....................... ATTGCGACTTTTGCTTTTTCCATCGCGGATCAGAAATGGTTTCCGCATATCT 390 23 100.0 49 ....................... TTACTGATAATCGGTTCTTCCCCTTTCTTGAGCTTGTTTCCGCATATCT 462 23 100.0 50 ....................... TTATCGGGAATATCTGCGAAGGGAATTGATTATGTCGTTTCCGCATATCT 535 23 100.0 54 ....................... ATGGACAATGCAGGGAACTACAAAAGATTTAATTTTAGGGGTTTCCGCATATCT 612 23 100.0 50 ....................... AAGTCAGGTGGGAGCTAGAGGGAGGTAGTGCGGGTAGTTTCCGCATATCT 685 23 100.0 50 ....................... GGTATCAGAAAAGTTTAAGGGGACAATTTCAGAAGAGTTTCCGCATATCT 758 23 100.0 50 ....................... AGACATGATATAATTTCCTTACTCACTTGGTTTACTGTTTCCGCATATCT 831 23 100.0 50 ....................... TCAGAATGGGCTGACAATTTTCGGAAGCTGTCGCCGGTTTCCGCATATCT 904 23 100.0 52 ....................... ACAATTGGTATACGAAATATGCAAAAAAATGCGGTAATGTTTCCGCATATCT 979 23 95.7 0 ......................A | ========== ====== ====== ====== ======================= ====================================================== ================== 12 23 99.6 51 AATCCCCGCAAGGGGACTGAAAC # Left flank : TCGCCAAACAGCCAGAACCTTGACAACTAAATACTTTCAGCGTTTCATTAGTTTCAGTTTGTGCTTGACCCGAAGCCTGAAATAAGGTTTTTTGAGAGGTCCGCCAAAATCGTCTCTGGATTCCGCCTCCAGTTTATGTTTCAGACGGCGGGGTTTCCGCATATCTA # Right flank : AAATAAATAACTGATGATAGAACTTGAAGCAATACTGCTTGGTTAAGCCTGAAAAGTCATTAAGCTGTTACGCAGCTAAATTTGATAACCATAATTTACTTGAACTTTGTAGTGCGGGCATCTTGCCCGCTAGAATTATACAAACTAAATGCACAACAGCTTAGACATCTCCAAAAAATAAAGATACTTGACCTGAAAACCCTGTAGAGACGTTCCATGGAACGTCTCTACAATCTTTTTTGGAGATGTCTATTAGTAGGTTGTGGAACGTAAATGTATCCCTGCGGGACACTGCGTGAACGCGGAGGAATGGAACGTTCATGAAGTGTGGGGTATCCCTGCGATCGCTGGAGGCATTATACTAAACACGGGTGAGATTTAAACTTTTGCCAAATGACAAAGAACCCAGATGTGTAGGGGTTTAGCACTGCTCATTGGTGTCAACTTAAGTTAGAAATGGCTTATCCGTTGTTCTTTGTATGGTAAAAGAGTCCAGCTTC # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.31, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 3453-299 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWA010000257.1 Dolichospermum sp. LEGE 00246 NODE_411_length_7720_cov_41.4711, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 3452 37 100.0 33 ..................................... CAAGGACGACCTGAAGAAGCTGAAACACCAGTC 3382 37 100.0 35 ..................................... CAATTATCTAGCTATGTCGGGCGTGGGTATGGCGC 3310 37 100.0 35 ..................................... TGAGATTGTCATTTTGCAACTTTAGAATCTCGGTT 3238 37 100.0 37 ..................................... ATTCTTCTGGGTAAATATCGTCAAAGATTCCTTGTGA 3164 37 100.0 37 ..................................... TTTATACTCACAAAGATTAAATAATCTCATTTTTGCC 3090 37 100.0 35 ..................................... GTTTCTCCTCTTCCGTCAACTCCTGATGATTTAAA 3018 37 100.0 36 ..................................... TACCCGAAAAATGGTCTGATATTGGTCGGAATGCTA 2945 37 100.0 34 ..................................... ATTGTATTCGTAACAATAACTCCTTCTTCTGGTT 2874 37 100.0 35 ..................................... GTCAAAGCCTGTAACAAAGGCGTTATCTTTGTTTC 2802 37 100.0 39 ..................................... AACTATTCTGAATCCATAGCCATCAAAATTGTCATAAGC 2726 37 100.0 37 ..................................... ATGATTTCTCCTATTTAAAAAGTGAAAGTTGGATTGA 2652 37 100.0 41 ..................................... CTTGATTGATTGAACCACCGTAACCACCAACGCAGTGGGAA 2574 37 100.0 33 ..................................... GCGGATGTATGGATTGGAAAATGTGTAGCTGTG 2504 37 100.0 38 ..................................... AATTCCATACTGAGTGCAGATTGCTTGGGTTTTATCCC 2429 37 100.0 37 ..................................... AAAATACTAGCTAGTCTAGATTGATCATGTAAAGATA 2355 37 100.0 34 ..................................... GCCATTTCCGTAGCATTTCCATATATTGTGGGTC 2284 37 100.0 35 ..................................... ATCTCTAACGCAGCCATTAGAGACACACGCCTTAG 2212 37 100.0 35 ..................................... CACTACCTCGTTCCATTTTGGTATCATCATGGAAG 2140 37 100.0 36 ..................................... TAATCAATGCTGAACTAATAGATATCCAGTCATCAA 2067 37 97.3 33 ..........A.......................... TGAAACCGTGAATTAAAATAACTTTATAGCCGT 1997 37 100.0 35 ..................................... AAATAGTTAGGGATGTCTCCGGGTTGTACCGGAGT 1925 37 100.0 38 ..................................... TAAATTGTAAGCATAAGTTACCTTGGCTAAGGTTTCCA 1850 37 100.0 37 ..................................... TTGTCTTCAAAATGGAATTTACTTAAATCCTTTCTGC 1776 37 100.0 36 ..................................... CAATTTCTCCTGCGCGGAGACATCGAACTTTTTTAG 1703 37 100.0 34 ..................................... TCAAAACCCAAAAACCTTGAGTAATTAAACATTG 1632 37 100.0 36 ..................................... AGCTAAACTTACCATTTTGAAGATTGTACCTTACCT 1559 37 100.0 33 ..................................... CTACCCTTCAAGCGTGTGATTTATTTAGTAGAT 1489 37 100.0 39 ..................................... TTTATGCTTTACCACCCTGAGCGGCTGGTATACCCGAAA 1413 37 100.0 35 ..................................... TTTACATGATTACGCTTGGATTTTAAATCTTTATC 1341 37 100.0 33 ..................................... GACGCTACTGTAAGCCTCGATAAAATTCTTTCT 1271 37 100.0 34 ..................................... TGAGTATGTATTTAGAAAATCGTTTTTATATTGA 1200 37 100.0 40 ..................................... CAGAAATGCCCAGCAACTCACCAACGATAGGAACAGTCTT 1123 37 100.0 36 ..................................... TAAATTAATTAAGGCGGTGCGTTCTTTTTTGGTAGC 1050 37 100.0 36 ..................................... TCTAGTTGGCGATGTTGAGAGGCAGATAGAAATTTT 977 37 97.3 34 ..T.................................. AAAGTATTTTCGCTATTTGCTCTCCTATCAGTAT 906 37 97.3 35 ..T.................................. AGTCTATTAGTCCTCGATGGCTCCAGCAAAAAAGA 834 37 97.3 33 ..T.................................. ACGGAGTTGATGTGGGAAGGAATGGTAGAACTT 764 37 97.3 33 ..T.................................. TTCAACCAAGAAAGCTAAATCTTCAATAAAGCT 694 37 97.3 34 ..T.................................. TCTACATTACTGACTACAAAGTATTTGGGACTTT 623 37 97.3 35 ..T.................................. TTGAATAACGCCTTCACTGTCAGCATAGTCAAATT 551 37 97.3 38 ..T.................................. CATCGTCACAAATACTTTCTCCGATACCGTACTTATTG 476 37 100.0 34 ..................................... AATCAATAGCTCCTCAACTCTAGGGGGATTAAGA 405 37 97.3 33 ..T.................................. TTCATTGTCTTTACTCCTTGGTTGTGTTTTTTA 335 37 97.3 0 .......................T............. | ========== ====== ====== ====== ===================================== ========================================= ================== 44 37 99.4 36 ATCGCAATTTCACTTACTCCCTACTAGGGATTGAAAC # Left flank : AAGAGTTTATCCTTGTCCTCTAGATAGATTGCCATTAATTAGAGAAGCTTTTGAACACTTTCATCTTCTATAAAGATTCAATAAAAATATGAGCAATGAAATTGTAATATTTACACAACTCTAACAAAATATGATTCCTAGCGATCGCCCACAATTCTTGAGGAAAACCCAGGCGATCGCTATTCGCTGCTGCAAGCAGTTCGCTTCTCCCTTCGTAGACATCGCCCCTGCCAAATTATTGAGAGAAGCGATCAGACGATTTTCTTCGCTTAATGCGCGAGGGGGTGGGTGTAAAAAATTCAATTTCTCAAAAAATGCCTGAAATCATGTCTACACAAGCTTTTCATACAGTTCATGGAGCTCACCCATCCGCGCACCTTGCACAGCAGGAGTTTCAGCTATTTTACTCCTTGACACTTTTCTTGAAATGGATTATCATAAAGGCATCCGCGCAACTGAACCTTGAAAACTACATATATATAGGCTTTCAGCACCCCGCG # Right flank : CAGGAGCGCGATCGCCGCTTTTAATCCGAGACATTGAATTGCAATTTAACTTACTCCCTGTTTCCGCACATCTAATTCCCGCAAGGGGACTGAAACCTTACTTGAATACGATGGCGATTACTAGGTCGCGCTTCGCTATCGCCCCGTAGGAATCGCTCTTAGATTTCCCGTTCTATAAAACTTACCCAAAATTACCAAAGTCTAGACACATCTGGACAGCGATAATCTTAGTGTTTATTTCCTGCTTCATCGTGGTCTTAGAATGACTTCTAAGAGGTTTTTCCACTCGACAGACAATC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCAATTTCACTTACTCCCTACTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 5063-5245 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWA010000390.1 Dolichospermum sp. LEGE 00246 NODE_634_length_5253_cov_23.3595, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 5063 36 100.0 36 .................................... TTAAATTGCTCCTAGAACTTTGAACGTGGATAGGGG 5135 36 100.0 39 .................................... ACTTTATAAATTGTTCCAGAGTATAGAAAAAACTGTTTA 5210 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 3 36 100.0 38 ATCGCTTCTTTTATAAGAAGTGGAATTAATGGAAAC # Left flank : GGTTTTGATTTGGGATGGTTGCAAGAAACGCACAACACTATCTCCGGCTGTGGCATTGGCAAAGGTGGCGATGCTAACTAAGATAGTATTGATAATTACTGCTGCTAGTCCTAAAGGTGCTATTAGCAAAATAATCAGTGTAATTGTCCCATTGAGAAATGCAACGGCTAAGTTCCGCACTAAGGCAGCACGATTAGAAATATACATGGTTTAGTTGGGATTCGGTATTAATTGTACTTTTTTAAGTTAAATCACACAGAAAATTTATACAAGTGATTTCATGCGAATGACGAATTTATTTATTGGTGATGATTTGTTGGCGGCGGGGTCAGGTCAATGGCGCAAATGCTGATGTTTCCGTTAACCCGGCCGATGTCTTTCTGTATAAAGGTTTCAGGGGTTTTGATTGCCTGTTTATTTTCTAAAAGCAGCCCTCAATTGATACCCCGTCGCAAATGGCATCTGGACATTAGGCTCTGTATGGGTTTATAATGATCGCT # Right flank : TGTATCTT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCTTCTTTTATAAGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 19854-15926 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWA010000003.1 Dolichospermum sp. LEGE 00246 NODE_7_length_37330_cov_38.0328, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================= ================== 19853 36 100.0 37 .................................... TTGGCGCAGGAGTAGGTTTAGCTTTTGGCTGTCTAGG 19780 36 100.0 39 .................................... TATATTACTTGCCAGCCAGAAAACTTATCATATAAAAAC 19705 36 100.0 39 .................................... TATCTTGTTCTTTAGACATAGATAGAATACCTTATAGAT 19630 36 100.0 38 .................................... GAAAAGGAGAGCCGAAGCCCTCCAGACAATTAACCAAA 19556 36 100.0 34 .................................... TTCTGGCATTAAAGATAGGATTCAACAATCCTTT 19486 36 100.0 37 .................................... GTCTATTTGCGCCCAGTTGGAATGATATCCTTGTAGG 19413 36 100.0 40 .................................... AAGCAGGTATTTCTAGATAACCCAGCAATAGGCTTCCCTT 19337 36 100.0 36 .................................... TTTGTTAAAGCTGACTGGATGCTACTAATAGCATCC 19265 36 100.0 37 .................................... TCAAAAGGATTAAGCAGTAAGGAAGATAAAAAGTTAT 19192 36 100.0 38 .................................... TTAATTCCCAAAGAAATATTAAGGAACTGGGTAATGAT 19118 36 100.0 33 .................................... TTATCTTGGACGTATTGGCGGGCTTGTTCTACC 19049 36 100.0 41 .................................... GCATATAGTGTTTTAAAGCTATTAACCTTATCTGCTTTAAC 18972 36 100.0 41 .................................... CTAACTTAGCTTTAAAACTTTTGTAAGTTCTAGCTATTATT 18895 36 100.0 40 .................................... GCGTGTGTCATGATTGATTAGACCTTTTAGGTTGTGAGGC 18819 36 100.0 39 .................................... TCTCCCTACGCTTCCACCCAAAATAAAGATGCCCTTCGT 18744 36 100.0 49 .................................... ATAAACTTCACCTTCGTACTTTTCGTAAGCTGGTTTAACGCGATCGCTC 18659 36 100.0 40 .................................... TATTTTATTCAGGTTTGATGTTTGGCTTAACTATATAGTT 18583 36 100.0 36 .................................... CATATTCGAGTGATAGCTTCAGGGTCTAATAGGATT 18511 36 100.0 38 .................................... ATCGAAGGTATAGTGCGTAATCTAGTTTCATATCTTTG 18437 36 100.0 42 .................................... GTTCAATAGCAAAGAATCAAGTATAGCAGCAGGTACAATTCC 18359 36 100.0 44 .................................... TGGTTATCTATCAGGTAATTACATGAAAACTAAAGTAAAAGTTG 18279 36 100.0 39 .................................... TTTGGTAGCATAACGTTAGCAAAGATGCTGGCTACTTCA 18204 36 100.0 36 .................................... TGTATCTAATGGTCAAGCTGGATTTTTAGAAATAGA 18132 36 100.0 35 .................................... ATGAACTTAACATAACTTTAATCTCCAGAATTGTA 18061 36 100.0 33 .................................... ATTATTGCTGTACCAGGTGGTAAATATATAGGA 17992 36 100.0 40 .................................... TTGTGTTGAACTCTACCAAGCCCCAATTGCACCTCGCACA 17916 36 100.0 44 .................................... TTTTTGGACAACCTACAACGGCAGCAAATAGAGCTTGCAGGAAG 17836 36 100.0 42 .................................... TTTAGGTAATACTACCATAGACAGTGTTTTAGAAAATCTCAA 17758 36 100.0 33 .................................... TAATTTGTTTTTCGCTACCTTGAAAAACTAAAG 17689 36 100.0 41 .................................... CTAATGGTAGATAACTTGGCTCTTTGAGCAATACTTATTCC 17612 36 100.0 36 .................................... AAATGAGCAACTATCAGAAGCGGTTGATGAGTTGTT 17540 36 100.0 34 .................................... CTAAAAAATCATATTCTTTAATCGCAACATCTAC 17470 36 100.0 41 .................................... CCAAGTAGTCCTAATAATGATGATCGCAGGTCTACTTTTTT 17393 36 100.0 36 .................................... AATAGAACAGAATCAAGAAGGTTCTCAATTATTAAA 17321 36 100.0 38 .................................... AAACTACCATTTTGGTAGTAGTGGGAAGTCAAACTTTA 17247 36 100.0 38 .................................... AAACCCCGCTTTGCTGACGTTGCCAGTTACTTGTTTCA 17173 36 100.0 38 .................................... AGCAATGTTAAGGCTTTATTGGGCGATAGATTTGGTGA 17099 36 100.0 34 .................................... GGTGAAGCACCTAACAGCTCGCCTTACTTCCTCT 17029 36 100.0 49 .................................... CCCTCTTTGAGTTCTCTTTGAGTTCTATGTTGAAGAATGCTAGAAAGAA 16944 36 100.0 38 .................................... CTTGTCTAGAGGTTTCTCTGAGGTATTTAGCTTTCTTA 16870 36 100.0 38 .................................... TAACGACTTCAAACCAGTGCCGATTGAATATAGTTCCA 16796 36 100.0 36 .................................... AAAAGCTGCATCCATATCATCTTTGGAAAACTCTTC 16724 36 100.0 42 .................................... ATGAGGCAAGCGATCTATTCGCTCACTAGTGACGATCAAATA 16646 36 100.0 35 .................................... GAGCTTTTAATTTCCATTGATAACTAGGGAAAGCT 16575 36 100.0 41 .................................... ATCAAATCTGTCTACTGAAGGAGCATTAGGTTTGTACTTTT 16498 36 100.0 48 .................................... ATGATTTCGTACCATCTAACTACGTTTGGGCTATAGCACCGCATAATA 16414 36 100.0 36 .................................... TTTAAACTGTTTTCAAGATGGTTCTCGGCAGCATAT 16342 36 100.0 44 .................................... TCTTCTACAGTGAAAGCAGAACCTTCTGGGTTACCTTTAAGAGT 16262 36 100.0 38 .................................... ATCTTCAGTTATACGCACTCCAGATGTTTCATAGTATT 16188 36 100.0 37 .................................... TTGAAGAGCTGAAATCGCCTCTTCGTCTAGTTCACGT 16115 36 100.0 41 .................................... GCATTACGGATTACAACGGCAACTGAACCGCCGTAATACTG 16038 36 100.0 41 .................................... TTGATTCTGACTGCGATCGCAAGTCTTTTTGTTGCTTTTAT 15961 36 83.3 0 ............CA.............G..AA..G. | ========== ====== ====== ====== ==================================== ================================================= ================== 53 36 99.7 39 ATTCCCACTCGCTGGGGATATTAATTGAATGGAAAC # Left flank : ATGTTTGTGTTATGTTTTTGTATGTGATTGCCTATGATCTTCCTGATGATAAACGCCGTAAAAAGGTGGCTGATTTATTAGAAGGTTATGGTCAGAGGGTACAGTATTCTGTGTTTGAATGTCAGTTAAATACGGAAAAGTACAATGATTTACGTCGTCGGTTAAGGAAGATTATCAAGTTGGAGGAGGATAATGTCAGGTTTTATCCTTTGTCTCGTCATACTCTTTCCCAGGTGGAAACTTGGGGGGTTGGTGTTCCTGTGATTGAACCTCCGGGTTCGATTATTATTTAGTGATTTCTGATACTAGAGTGTGGTGTTGGCCGAAGGTCAGGTAAAATGGCTGAAGTGTTGATTTTATGGTTGTGAACTTCGGTTGCTTATTGGGTAAGGGTTACGCGGTTTTTAATGGCCGTTTTGTCGGCTGGTTGGCGGTGGTTTTTGCTGACCTTCGGAAAGTGGGTCTAGACTCCTTGCACAGTAAGGGGTTAAAATAAAGGG # Right flank : GTGCGATCGCTAATAAAGCCGTGTTTGTTTTAACCTTAAAAAATGCTGCCAACAAAAGTTAATACAATACATTTAAACTACTAAGCGTAGTTTAAAGAAAAACTAGAGTTTAGTACCTGCATAAATAAGAACCGATGTCAAAAACAAGAAAATATTTGTAATAAAATTACAATATGCAGGAAAACCCTTGCAAATAAAGCATTTTAGGGATTATCTAGAGAAATGTAGCAATATTTTATATTGATGGACAAATACCGAATTAAGACTATACAATGCATATATCAGATACATAGAGGAATTACTAATGTAGCAATATTTTATATTTATGGACAAATACCGAATTAAGACTATACAATGCGTATATCAACTACATAAAGGAATTACTAGTGTCAGAAGAATATTGGCGGGCTAAAATCTGGGGTTTACTACATGACCCTATATTAAAGGCATTACATAACAATAGTGGTCGGGGTAAAAGTAGCTTCTATAAACAGTTAGAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCCACTCGCTGGGGATATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 3592-2397 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADEWA010000493.1 Dolichospermum sp. LEGE 00246 NODE_833_length_3943_cov_42.0904, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ======================================================== ================== 3591 23 100.0 48 ....................... TTTCCTAATAATTTCTTTGGTGAAAAATGGTTGGGTTTCCGCATATCT 3520 23 100.0 48 ....................... ATTAACCAATGATTTAAGTTTATTCCTAGTTTTGGTTTCCGCATATCT 3449 23 100.0 51 ....................... ATACCCTAGCTGAGATATACAACTGGCAAAGAATGTTGTTTCCGCATATCT 3375 23 100.0 50 ....................... TGAATTCTACTACTACCATTCAACAGGCTTCTTCTGGTTTCCGCATATCT 3302 23 100.0 48 ....................... CTGTTGTGGCTTATTCTTTGAGTAAATCTACTGTGTTTCCGCATATCT 3231 23 100.0 47 ....................... ATTTTCAATAAATTTGCTTTGCATATTTTTAAAGTTTCCGCATATCT 3161 23 100.0 50 ....................... AAATCTTGAGGATTTTTGAGAATATAGCCTTTAACTGTTTCCGCATATCT 3088 23 100.0 52 ....................... TCCCCTTTGGCTGTCCTGAAGCGTCCGCAAGTCCTCTAGTTTCCGCATATCT 3013 23 100.0 48 ....................... ATAATAAAAGCGATGAAAGATGAAATAAACTTAAGTTTCCGCATATCT 2942 23 100.0 51 ....................... CGAAATATCCCTCAACGAAAGTCCGGTGGTGAAATCGGTTTCCGCATATCT 2868 23 100.0 56 ....................... GAAAATAATTTTCATAGCAGGTGATTCAAAAAAGAGGTTCGAGTTTCCGCATATCT 2789 23 100.0 51 ....................... GAATAGTAAAGCCTCACTGAACAAATATTCATAATCCGTTTCCGCATATCT 2715 23 100.0 51 ....................... AACTCTATTGTGTCCATTGACTACATAAACCTTAGAAGTTTCCGCATATCT 2641 23 100.0 53 ....................... TCATTATCTTCCCCTCCAACATAAGCCCCATCCATAATCGTTTCCGCATATCT 2565 23 100.0 49 ....................... ATATAGTCTTTGATTCTGACACCTAAAAGAGGGAAGTTTCCGCATATCT 2493 23 100.0 51 ....................... AGGCGTACAACTACGATAGGTACAAAAATTGTCCTAAGTTTCCGTATATCT 2419 23 87.0 0 ..C...............T..G. | ========== ====== ====== ====== ======================= ======================================================== ================== 17 23 99.2 50 AATCCCCGCAAGGGGACTGAAAC # Left flank : AGATAGAAAAACTGATCAAGTCTGATGAAGATTCTCTTAGAATGTATGTGTTGGATGCTGGGAGTGTGAGAAGAACTATTACCTATGGTTCGGAAATCCCTAGACAAGAACAGGCTATCATTATATACTTGATAAGTAAGATTAAATTTTTGGCAGACCTAGAGCGGGGTCAAAAACCCTGGAGATTCGCCAAACAGCCAGAACCTTGACAACTAGATACTTTCAGCGTTTCATTAGTTTCAGTTTATGTTTGACCCGAAGCCTGAAATAAGGTTTTTTGAGAGGTCTGCCAAAATCGTCTCTGGATTCCGCCCCCAGTTTATGTTTCAGACGGCGGGGTTTCCGCATATC # Right flank : TACCCTTCCACTGCGGCTCAAAAAGTTGCGGAATTGGACGTGTGGGTGCGAGAACTGAAGAAACGGATGCCATCTAGTCATCATTGATTATTTTTATTGATTTAATCCCTTGGCTACATCTTTGGACTAGCAACCATTTTTTAGCTTCAGGTTCAAGGGCTGGCTTAATACGGAAGTTTAAAACATCTGCCCAAGTTTCTACTCCGTAACTACTAGCGAACGCCCTTTCAAGTTCCTTGAATTGTAACCAGTTGCGATCGCTGATAGCCTCAAAAACTGAGATAAATGTGTTCAGTGGTAGCAAGGTAGCTGTTTCACTCATTTTCGTAATCCTCAAAAATACAAACTATCGGCAAGATGTCATCTTCTATATCAATGACTTCAATTAGTCGTTTTCCCGTGTTTTTAGCAATCCGTTTGCAATAATCTTCAGTTGCGGCCATGTGCCATTCTTTGCGTTCTGTAACTGGGTCGAATTTCCTTTTCGAGCGTTTAACCTC # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.24, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.40,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //