Array 1 2705053-2703160 **** Predicted by CRISPRDetect 2.4 *** >NC_015311.1 Prevotella denticola F0289, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== =============================== ================== 2705052 47 100.0 30 ............................................... TAAGGGAACAATCATTGGAATGAATATACC 2704975 47 100.0 30 ............................................... GGAAAGTCTTTTTGAACCAACCTACAATAT 2704898 47 100.0 31 ............................................... ACTTGAGCGTTTCAAAGAGTTTGTTGATGAA 2704820 47 100.0 30 ............................................... AATAGGGCTGACAACAATCTTCTCCTTACC 2704743 47 100.0 30 ............................................... TACACGCAATGTGTACACGGATGACCATTT 2704666 47 100.0 30 ............................................... AATGGAGAAAATACCCTACCTACCACCTCA 2704589 47 100.0 30 ............................................... TCTGCTCGCTTGCTTCTTGGTATTCTCGTC 2704512 47 100.0 30 ............................................... GAAATATCATCGTATAATTGCACTTTGTGC 2704435 47 100.0 30 ............................................... GATAGCTTGAAGTTAACTGCTACAAAGTGG 2704358 47 100.0 30 ............................................... ATTAGTAGGTCCTGATATGATAGCTATGAC 2704281 47 100.0 30 ............................................... AGAAGAAGCACGCAAAAGAACGTCACCTTT 2704204 47 100.0 29 ............................................... TATGTTTGTAAGGATTTGTCATATTATTC 2704128 47 100.0 30 ............................................... AGCATAGCTACACGAGGACCGAACTTCTCA 2704051 47 100.0 30 ............................................... AAATCATCTACCAAAATGAGTACCGAGAGC 2703974 47 100.0 30 ............................................... TGTCCTTACCGTAGGTAGAGCGAACATTCT 2703897 47 100.0 30 ............................................... ATGGCAATCTGTGTTTTACCTGAAGACATC 2703820 47 100.0 30 ............................................... CGGCTACCTGTGTCATTCCATTGCCGTTTT 2703743 47 100.0 30 ............................................... CACGGAGGGCACGCAGGCGGCGGCATCGTG 2703666 47 100.0 30 ............................................... CGCCCTGCCTCCTGCACCTTTTTGAGTTGC 2703589 47 100.0 29 ............................................... GATGGCTCGATGAGGTACTTCAGTGGTAT 2703513 47 100.0 30 ............................................... AAATAAGCAAGTATATAGTTAATGACATGC 2703436 47 100.0 29 ............................................... CATCTGCATTTCATACTCGAATCCGTTGC 2703360 47 100.0 30 ............................................... ATGACCGGCGACGCACCCTGCGCTCCTTCC 2703283 47 100.0 30 ............................................... GCCCCTTATCTCGTTCCTTCCGACATCTAT 2703206 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== =============================== ================== 25 47 100.0 30 GTTGTGAATTGCTTCAAAATGTGTATCTTTGCAGTAGCAAGCACAAT # Left flank : CAGTGTCTTGCTGTATAGGATAGTGACTGGATTGAACCGGCCTTTCCTGCAGATGTGCTGATGCCAGGCACTTATGGAGTTGCCGACAGACACCGGGCGTGTTGATGGCCCGTACCATGCAATATATTGCCGGGAGGGGAGCCAACTTGCAGCTGGCGAAGAGCTGTGCCGGCAGAACTTATTTCATCAGGAGATTACTTTTCCGAAGACAATGCGGAATGGTCTGTTCAAAAGAGATTGCACAGGGGGATCATGCTGTTTGAGTTTTATCGGACAGCATTCAATAAACATAAGTGCAGGAAACGGAGATAATTTATGGATTCGGCAAACGGTCATCCCTTCGCAGCAAGCCTATACGCTCTACGCAGCAGCCAACTACACATTCCTGAAAGCCAACTACGCCATTCAACTGAAAGCCAGGAATAAATCTGTAAGGCAGCAGGCAAGACTGACCAAAAGTCAAAACACGAGTTTAAGCTTACAAAGTCGTCCGTTTGGTG # Right flank : TGGAAAATAAGTATTGCTCTGATTCTCAGTTAGTAACATTGTCTTTGTGCAAAATAAAAACTGCAATCTAAAAGAGTCCTATTGGTAATGATAGGACTCTTTTTCTTTTAGAATAATTCAAGTTGCTGCCCAGGAGCGTTGGGTGTTTGTGCCTGTGCCCCACAAAAAAGCTCTATCTCACCAAACTGTTTGTCTGTAATAACCATAATGCAAACATTGCCAGAATTAGGCATAAAAGACTTTACTCGCTTCACATGTACATCCGCATTCTCTCTGCTTGCACAATGACGAACATAGATTGATAATTGAAACATAGTAAATCCATCTTTCATCAAATCTTTCCGGAAAATAGTATAAGCACGCTTTTCCTTGTTTGTATTAGTTGGAAGATCAAAAAAGACCATCACCCACATAACCCTATATTCGCTAAGTCGTTGCATCAAAGAAAAGAAGGATAAGAGATTTCACGAGCTTCCCCATTATAGCACTTCGCAAGACTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTCAAAATGTGTATCTTTGCAGTAGCAAGCACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.40,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 2 2811109-2808033 **** Predicted by CRISPRDetect 2.4 *** >NC_015311.1 Prevotella denticola F0289, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 2811108 37 100.0 35 ..................................... AATCTTAGAATAAGGGTCAGACTTAGCATGAAAAA 2811036 37 100.0 34 ..................................... CTACAATGAAATTCCCAATGACTACATATCAGAG 2810965 37 100.0 34 ..................................... TTGGCGGTTTCATTTATTACTCTTATTACTCTGA 2810894 37 100.0 34 ..................................... TTGGCGGTTTCATTTATTACTCTTATTACTCTGA 2810823 37 100.0 38 ..................................... AGTGGAGCGCGTGAATGAGAAAACGTTTTTCTCCGATG 2810748 37 100.0 35 ..................................... AGAAAAACGATATTCTTATCGCTCTTAAATACGGA 2810676 37 100.0 35 ..................................... TTAGACAGCTTGTGCGTAATGCTGTGATGCCTTCG 2810604 37 100.0 35 ..................................... TTCCAAGAGGCAGTTGACTTCGCAGAGAAAAACAA 2810532 37 100.0 36 ..................................... TTCTTCAAGGGTGATGAGAAAGAATTTGAAGAGATT 2810459 37 100.0 36 ..................................... AGTACTTTTACCTGGGGTAGAAGTAAAAGGAATTGT 2810386 37 100.0 37 ..................................... AACTATAATAACTATAATTATGAAATATTTACTTAGA 2810312 37 100.0 37 ..................................... GTGGCGATAAGAATGTCTAAGAGAGCGTATGCCCTTT 2810238 37 100.0 36 ..................................... GGATCAAAACTCTAAGGAATTCAAGGAGGCTCTGAA 2810165 37 100.0 35 ..................................... AGCCAAAGGAGTCTGCTTTGGTTGTGGCAAATAAG 2810093 37 100.0 36 ..................................... GGACTGCACTGACAAAGAAAAAAAATCTTTAAGAAA 2810020 37 100.0 35 ..................................... TACAGGCGAAAGTTTCGCTGCTTGCTTAAAGCGTG 2809948 37 100.0 35 ..................................... GTAACAATCTGCACGGCAAACGAACTCAACAAATC 2809876 37 100.0 36 ..................................... ACTTAACAGAACTTACAGCAAGTAAACAATGTGCGG 2809803 37 100.0 38 ..................................... GATACAACACCCCTGTCTACATGACCTTTAAGCAAGCC 2809728 37 100.0 33 ..................................... AAGGAAGTCTTCATCAAGCGAGGCCAGGAAGGT 2809658 37 100.0 35 ..................................... AAGACTTAAAAAAAACATATAAAGAGTGTAGTGAT 2809586 37 100.0 36 ..................................... TAAAGTCATGAATCTACAAGACTTAAAAAAAACATA 2809513 37 100.0 35 ..................................... TACACTACTTGCGAAAAGTACACGCATGACATAGA 2809441 37 100.0 36 ..................................... CTTTCGTTTAGAATAAATGAAGCGTGGTGTCTCGTC 2809368 37 100.0 36 ..................................... GAAAGTTAAGGGAGTTGATAACAACGGAAATAAACT 2809295 37 100.0 37 ..................................... CACTATTATGTAAGCGACACAGCGGGGAGTTTTGCAA 2809221 37 100.0 36 ..................................... AGATTGCAATTATATGGGAAGTTTGATTAGAGGCTC 2809148 37 100.0 36 ..................................... TTACAAACTGCTTTAGGGACAAAAAAAGCAAGCATT 2809075 37 100.0 34 ..................................... ATTTTACCAATTACAGAGCAGAATAAATTCTCTT 2809004 37 100.0 37 ..................................... TTCGGTAACCAAAAATTGCAATTATATGGGAAATCTT 2808930 37 100.0 33 ..................................... TCCATCTTTGACTTATTGCAACAATATATATTT 2808860 37 100.0 33 ..................................... TCCGACATCCACTCGTTGATGAGTGTCGGGGTG 2808790 37 100.0 34 ..................................... TTTGGCTTTTTGCGACAACAAGGAGACACGCGCG 2808719 37 100.0 37 ..................................... TATTTAAGCCTTTCCCGATATGTTAGGCAAAAACAGC 2808645 37 100.0 37 ..................................... CCAGAACTATGATAGCATGGACGAGTTATTCGCTGCA 2808571 37 100.0 38 ..................................... TTATTTGTCACGACATTATTTTGGTGTGGGCATTTCCA 2808496 37 100.0 34 ..................................... GGCGGTACGCTTACTTTTACAAAGTTAATTATGA 2808425 37 100.0 36 ..................................... TACTTTTACAAAGTTAATTATGAGAGTAAAACAAGG 2808352 37 100.0 31 ..................................... CCGAAATTAATATAACCCTTTAAGCCCTCGA 2808284 37 100.0 35 ..................................... GATCCAAAAAACCTAATAAGGTTGAGAATCAGGAT 2808212 37 100.0 34 ..................................... AATAAAAAAAAGTTCGGGTCGAAGATCCAAAAAC 2808141 37 100.0 35 ..................................... TGCAGAGCTTAACAACGACGGCGAAACCGTCGTTA 2808069 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 43 37 100.0 35 GTCTTAATCCTTGTTTTAATGGAAGATACTCATTGAG # Left flank : TTCTCCGAGATAGTCTGCCCCGCAGCCGGCATCACATCATAGAAAAAGCCGTTCTCCACTGCCGGACCGAAGCCGAACTGAATGCCCGGATAGAGTTCCTGCAATGCCTCGGCAAGCAGATGGGCAGAGGTGTGCCAGAAAGTGTGCTTGCCTTCTTCGTCATCGAACTTGTAAAGTGCGATGGTCGCATCTCCGTTGATGGGACGGTTCAGTTCTGTCGTTACGCCATTGACACCGCAAGATACAACGTCACGGGCGAGAGCCGGCGAAATACTCTCGGCGATTTGATAACCAGTCACACCCTGTTCGTATTCACGAACGGAGCCGTCTGGGAAAGTGATTTTAACCATACTACAAATTAGTTTTATAAATCAAATGTTGTGGCAAAGGTACTACTTTTAATTTATAAATCATAATTCTTTTGCCCCAAAAGGCTCTTCTTCCGAATCCTTGTTCTAATATTGAGTGAAGGTTGAGGACGCAAAGCGAATTCTTGCAAA # Right flank : AGTAAAGACTTGTATTCCTTTATATGCCGCAGCCCCATGCGTGTAAGACCTAAAAATGCTTGAGGAATTAAGAGAAATTAACCATATTCCAAGCGAGTGCAAAGGTACGAAAAACTGTGCAGAATGTCAAAGATCGATGCGTTAAATATTCTTTATGGAGGAAGCATTGCTGCCGCTTTCCCACATGGGGAGGACATTCTTCCCTGTTGTAGAAGGTATCCTCGCTGCCATCTTCAGAAGAACAATGTGTTGCGCGAACGGATGATGACATCTATGCTGATGTCTTCACCGATGATCTGCATTGCCCGGATCTGATCGGTGGAGACAGGACAGACGATGATGCTGTCGTGGTTGTCGTAAAGCGACTGCACCTCGGCAAGGTCGCTTTTAATTTCATCGTAGACGCTCTTGTCGAGGTCGGCAAGGAAGATGGAACGCTGGATGCGTGTGCATCCTTTCCGTTCCAGGTATTTTGCGATATGATAGCGTACCTTGTCGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCTTGTTTTAATGGAAGATACTCATTGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //