Array 1 2059857-2061510 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027010.1 Akkermansia muciniphila strain EB-AMDK-36 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 2059857 31 100.0 34 ............................... AACATTGCGGATGAATAACTTATGATTGTGTCAT 2059922 31 100.0 34 ............................... AGCGTCCAGAATATAGGCGTAGGCTTCAACATTT 2059987 31 100.0 33 ............................... ATCCTACGGGAGACGTCGACACAATCATGGAGA 2060051 31 100.0 34 ............................... AGGAATATGCTGACCTTAAATCCTTCTTCACCCG 2060116 31 100.0 34 ............................... ATACACCGCCCATGTGAGAGTTTCTCCAGCGTTT 2060181 31 100.0 34 ............................... CATCTTGTTGTTCATAATGTTTTCCTTTCTTTTA 2060246 31 100.0 34 ............................... CCGCCTCGTAGGTCTCGCATTCCGCCGGGGTTAA 2060311 31 100.0 34 ............................... AACGTAAGCGAAAAGGCCCGCCCCCTCGTAAAAG 2060376 31 100.0 34 ............................... TGCGTCATCATCTACGTTAAAGGCCTTGCGGGCC 2060441 31 100.0 33 ............................... AAGGCCAAAAGAAGCCAAAAGAATCCAAAGGAA 2060505 31 100.0 34 ............................... TTCAGCATCAGGGACATTGAAGGCCTTGCGGGCG 2060570 31 100.0 34 ............................... GCACCGGAATCGGTATATTTCGGACGGCCTGACC 2060635 31 100.0 34 ............................... CCGCCTCGTAGGTCTCGCATTCAGCGGGTGTGAG 2060700 31 100.0 34 ............................... AAAGCCAAAAGAAGCCAAAAGAAGCCAAAAGAAG 2060765 31 100.0 34 ............................... TCCCTACCCTTTTAGTAGGGATTCCTTGTTCCTA 2060830 31 100.0 34 ............................... CTACTAAACCTATCGGAATTGTGATTGAAGGCAT 2060895 31 100.0 34 ............................... CGTTTCCCTGGTGGGGTAGATAACGGTGGAATAT 2060960 31 100.0 34 ............................... AATTTGTATGACACAATCGTAAGTTATTCAGCAT 2061025 31 100.0 34 ............................... TGTTTCCCCGGTGGGGTAAATAACGGAGGCATAT 2061090 31 100.0 34 ............................... CCGCCGTAGGACAATCTCCCATGTGCTATGCGCC 2061155 31 100.0 34 ............................... TACTTGGAGCGGAAACTTTCTACGGCATGGTCGA 2061220 31 100.0 34 ............................... CGGAATGCTCGACGGCAATCTTCAACGCGTTATT 2061285 31 100.0 34 ............................... TTTTTAGCCGGCGCCGCAACAGGGGCGGCTTCCG 2061350 31 100.0 34 ............................... TATTTGTTTGGTTTGTGATTGTGCGGGGGAACAA 2061415 31 100.0 34 ............................... CAACAAACCGATACGTCCCCCAAGTTGTTTCTTA 2061480 31 90.3 0 .........T...................GT | ========== ====== ====== ====== =============================== ================================== ================== 26 31 99.6 34 GTCGCACCCACACGGGTGCGTGAATTGAAAC # Left flank : ACTGCCCTGTAAGAGCGAGGCAAGCTTCTTCTATTGAGCCTTAAACAGGAGCCGTCCGTAAGGGCGGCTCCTGTTGCATGGCGGCGCAAGTGGAATGCAGGTCAGTTGACTGCCATTAAGGTGGCAGCAAGGCATGTATATAGATCCGGATATTCCTGTTTTCCGGTAGGTGAATTCCTGGTTTTGTGAAGGAATGAGGAAGATGTTTCTGGACGCAGTAAAAAAGAACGGTTAGCATCAATGAGCCAAATTGAGTGCAAGCTGGCTCGGACGTGAAGTAACTGAGGTTTTCTAAGATGATGCCACATCGGATGCTGCGCTTGCGCCAACCTCAAGCTCACAGAAAATTTCCGGGAATCCGGCGCATGCTGTAAGCGATTGAGAAATGTAGCTTGACAGAAAAATTCCCTTTGATCAGGCCTGACCGCATCTGGTTCTTGCATCAGGTTGGCGCAAGACCTTTGTTGCATGTTTGATACTCAAACCGTATTCGTCAGGCC # Right flank : TTTTTATGTATGTTTGACATATTTAAATACGAATCGTTGTTTTATTAAGGGAGGGAGATATATTGAAATAAGGGTATTTGTTGCTGAAGAATGAAAGATGGATTTTTGTGTTTTTTGTTGAATGCAATATTTTGACGGAGGAAGTTGGTTTTTGGCTGATAGAGGAGAAATGACGGGAAGTATTATTGGACGAATATGAAAAGATATTGTCTGGTTTCCGGGTTATGTTTGTGCCTGTTCATGGGGATATTTTCATGTATTCCGGAAGCTCCGGAGCATAAGACGGAAAAAGATGCCTCAGCCATTGTTCTGGATGAGGATTCGGATATAATCTGGAGGAATTTTTCTTTGGGCCGCGTTTCATTCGATGATAAGGCTCCGCATAGTAAAGGTTCCCGCATTTTTCACCGATTGATTCCAGATACGGAGGTTTATATCCGTCAGTTGTCCCGTATTGTTCTCCATACGTTGTATGAGAGTCCTGAAGAATGTATTGTTCC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCACACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2553258-2549676 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027010.1 Akkermansia muciniphila strain EB-AMDK-36 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 2553257 33 100.0 33 ................................. GATTGCGTAGGGCCGCATGTACGGCTTAACATA 2553191 33 100.0 34 ................................. CACACATGCACCATGTCCAAATCCTCAAGGGCGG 2553124 33 100.0 34 ................................. TGGAACAAGGAATCCCTACTAAAATGGTAGGGAT 2553057 33 100.0 34 ................................. CATGTCATGCCGTTTTCGTTGGTTTTAAGTGGAT 2552990 33 100.0 34 ................................. TTGTTGGTGGTTTTAGTTTAACTGATTTTATTAT 2552923 33 100.0 34 ................................. TCCGGTGGGAAGGATTGCCCAGACCGCCGTGACA 2552856 33 100.0 34 ................................. TTCATAATGTTTCCTTTCTTGTTGGTGGTTTTAG 2552789 33 100.0 33 ................................. CACATATGCACCATGTCCAAATCCTCAAGGGCG 2552723 33 100.0 34 ................................. TCGCATGTTTGTGTAAGTCTCCTTGTGGCTCTTA 2552656 33 100.0 34 ................................. CATATCAGGCCGTTTTCGTTGGTTTTCAGCGGAT 2552589 33 100.0 34 ................................. ACCGCAAAAGTCACGATAGGAACCGCAATCGGAC 2552522 33 100.0 35 ................................. CCGCCTCGTAGGTCTCGCATTCCGCTGGTGTAAGA 2552454 33 100.0 34 ................................. CCCGGTGGGAAGGATTGCCCAGACCGCCGTGACA 2552387 33 100.0 34 ................................. AACGGCCCCCGTAGGATAAATGACGGTGCTATAT 2552320 33 100.0 35 ................................. TATGCGGACTGAGGTAGGCAGGCCGGTAGCATATA 2552252 33 100.0 32 ................................. GCGTCCAGAATATAGGCGTAGGCTTCAACATT 2552187 33 100.0 35 ................................. CCCGGTAGGCAAGATTGACCACACCGCCGTGACAC 2552119 33 100.0 34 ................................. AGTAGCAGATTGTGAGAGTTTCCGGCTTGTGATA 2552052 33 100.0 34 ................................. AATGTCCCTGATGCTGAATAACTTACGATTGTGT 2551985 33 100.0 33 ................................. GATTCATGGCAACGGGGGTAAGTGGCTTTTCGC 2551919 33 100.0 33 ................................. TGCCAGTAATAGCAAGTGTAAGGGCCGTTTCTT 2551853 33 100.0 34 ................................. GCACCGGAATCGGTATATTTCGGACGGCCTGACC 2551786 33 100.0 34 ................................. AATATCCCTGATGCTGAATAACAAAACCACTAAA 2551719 33 100.0 34 ................................. ATAATTGTTTCCTTTCTTTAGTGGTTTTAGTTTA 2551652 33 100.0 34 ................................. CGGACGGCCTGACCCCTCCACCAGCAACGGAATC 2551585 33 100.0 34 ................................. TCTTAGCGAAAAGCCGGATTCCTTTCCAGGTCAT 2551518 33 100.0 33 ................................. TTGGTAGTCACAACATGAAAGCCGTTATGCCTT 2551452 33 100.0 34 ................................. CCTTCCATTCACCCCGGATGACTATTTCCGAGGA 2551385 33 100.0 34 ................................. CCTGGGATGTTGCCCCCGCCCTTGCGGATTTGGA 2551318 33 100.0 34 ................................. ACCTTCTTGCAATTTGATTTGATTGTTCATTGTT 2551251 33 100.0 34 ................................. CCCGGTCTCTTATATAGTGAGGGGAGTTCTTTTG 2551184 33 100.0 34 ................................. AAGAAATTGAGGATTCAAACTACCGCCTTTGCGA 2551117 33 100.0 34 ................................. TCCTGGGACGTTGCCCCCGCCCTTGCGGATTTGG 2551050 33 100.0 34 ................................. CCCGGAGACCAAGGCATCCCATTTCCCTACATGT 2550983 33 100.0 34 ................................. CGGTGTGGGAGATATACCGTTTCCGTTGCATAAC 2550916 33 100.0 34 ................................. TGCCAGCTTGCGAACCTTTATGGAATTGAGATTG 2550849 33 100.0 34 ................................. CCGTGACAGGGCGGGGGCGTCATCATGCGGGTTC 2550782 33 100.0 35 ................................. ATCTTCCACACGTGCCAAGTAACTGAGGGCATAGG 2550714 33 100.0 33 ................................. CGGCACCGTTTTCGTAGACCGCCCATGTGAGAG 2550648 33 100.0 34 ................................. ATCATCCGCAATGTTGAAGGCCTTGCGGGCCGCA 2550581 33 100.0 35 ................................. CGTGGGATAGGGTGAATCGTGAATCCAAAGGAATC 2550513 33 100.0 34 ................................. TTGCGGAAACAATAGACCGCCCTGTTGACCGCCC 2550446 33 100.0 34 ................................. AATATCGTCCATTTGCCGGGTAGTGGTTTGTGAA 2550379 33 100.0 34 ................................. ATCGTACATGGGCAAGCCATAATCGGAACAAAAA 2550312 33 100.0 35 ................................. CCCGGTGCGGGTGATTTGCGTGTAGGCAACCGGCC 2550244 33 100.0 34 ................................. AGCTTCAACGTTGAACGCGCGGCGGGCCGCATAT 2550177 33 100.0 33 ................................. AATTTGATTTGATTATTCATTGTTTTATTTCTT 2550111 33 100.0 34 ................................. TAATCCAGAAGTTAATGATATCACGGGGACGGGG 2550044 33 100.0 34 ................................. CATGACATAGAACGCACGTACCTTCCGTCTAATC 2549977 33 100.0 34 ................................. CCCGGTGGGTAATATGGACCATACCGCTGTGACA 2549910 33 100.0 33 ................................. TAGAGAGCGAGGCAGGCCGCCCGGTTGCCTATT 2549844 33 100.0 34 ................................. CCGGCGTAGGACAATCTCCCATGTGCTATGCGGC 2549777 33 100.0 34 ................................. GGAAGCCTCAGCACATCACACATCGCCGCCTGTA GC [2549754] 2549708 33 97.0 0 .........T....................... | ========== ====== ====== ====== ================================= =================================== ================== 54 33 99.9 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : GCTGTTGTCATGTATATTCTCATTACGTATGATGTAGCTACGGATGATAAGGCCGGGCAGCGGCGGTTGCGGCAAGTTGCCCGAGCCTGTGAAAATGTCGGACAGAGAGTGCAGAATTCCGTATTTGAATGTGAATTGACTCCTGCCCAATTGGTTGACATTAGGAACAAGCTGCTTAAGATTATTGATAACGAGAGTGACAGTCTCAGAATTTATCATATGGGGTCCAATTGGCATCATAAAATAGAACAATTGGGTAAGGAGAAAAGCTATGACATCTCCGGTCCCTTGATTATTTAAAGACTGTGGAACATGGCCTGTGCGCCAACCTCAAGCTCACACGAATTCCCCGGCAGGTCGGCGATTGGTGTAATGCATTGAGAATAGAAGATTGACAGATAAATACTCAGAAAGTGTAACCGTGCAATGACGGTCTTTTTAGGGAGGTTGGCGCAAAGTATGATTTGCTCTGTTGAGTAGTAATGTATAAAGTCGGTTGC # Right flank : CTGAATGGTGATTGTTATTTGCGGGTTTCCGCCCGTCGCACTCCTTGCAGAGTGCATGAAGAGGACGACGAGGCGGTGGGCTGGGGCGGCCTGTTGTCCTCTTGCAAGGGGATGGCAACAATGTTGCAGACATAGCACAGGAGAGGTGGTCAAGGGCGTTTTTCCACAATGCTTGATAATTTTTCTACAAAGTGTTGCTACGTTCCAACTCCTTAAAGAATCCAATTTCCAAAAAAATCCAGGATTTTTGAATCTGGAAGGCTTGTCAGTTAATTCCTCTATTTATTTTTCAGAAAGGGGGTGCTGATGCAGGTTGAGCTCCGCAGGAGGAATGGCCTGGAGCAGAGCCAGGATGGGGTCCTGCGGTGCGGCGCCTATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGAAGGGCCGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCTCCGTCCTCGTCCCGGAAAACGCGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //