Array 1 53921-56897 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJNA01000003.1 Streptococcus cristatus strain BCC51 D8872_contig003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================================================= ================== 53921 36 100.0 30 .................................... AGTTATTCTGATGGGTCTTATGATAATTCA 53987 36 100.0 30 .................................... TAAAAATAGTCTTTCTCTTTGATATAGATG 54053 36 100.0 30 .................................... GCCAGGTACTGTCCTAATTCACCGATACGG 54119 36 100.0 30 .................................... TGCAGCCATCTATGACGTTCGTGGTATTCG 54185 36 100.0 29 .................................... AAATATCTACCACAGGAAATATTTCATCC 54250 36 100.0 30 .................................... CTTTTTTGTTGATGGTCAATGTCTCAATAT 54316 36 100.0 30 .................................... AAAACAATCTCAAGGAGAAATTATCATGAC 54382 36 100.0 30 .................................... CACGCAAGAGCCCTATAAACCTTCAACCTA 54448 36 100.0 30 .................................... CGATGTCTTGGATAGGGTTCAAGCAAACTC 54514 36 100.0 30 .................................... TGTTGTGAAATGTGCTAAGAAAGTCAATGT 54580 36 100.0 30 .................................... TCCTGACTGCCAGATTAAAGAGCAGTATCG 54646 36 100.0 30 .................................... AAGTCAACGAGGGTACCCCCCGAAGCGGCA 54712 36 100.0 30 .................................... GCAGAGGCAGCCTATCATCATCCATAAGGC 54778 36 100.0 30 .................................... CAGCCGTTACTGTGTAATTTTCGTACTTGG 54844 36 100.0 30 .................................... AGGAATTCTGGCCAACCCCGTATACTGCGG 54910 36 100.0 30 .................................... AATGAGGGCTTAAGGCTCTACACAGACACA 54976 36 100.0 30 .................................... TAAATTGTTCAATCTCAGCCATCTTGCGTG 55042 36 100.0 30 .................................... TAAATTCGATCATTCTTAATCCACCCCCTC 55108 36 100.0 30 .................................... CGCTGGCCGTCTTTTGATTGACCAACTGCC 55174 36 100.0 30 .................................... CCATCGTATCCAGTGAACGTCACTACTCCA 55240 36 100.0 30 .................................... AGTACGCATTTAGAAATGCTGAGGATATCT 55306 36 100.0 30 .................................... CTCTCCTCACCAACTAATATCGGAAGCTGA 55372 36 100.0 71 .................................... GTCAAATCTCAGATAGAAACTAGGGCGGAGGTTTTTGTACTCATAAGGAGCGTTGACTTTTAGTCCAACAG 55479 36 100.0 30 .................................... GTCAAATCTCAGATAGAAACTAGGGCGGAG 55545 36 100.0 29 .................................... AGTGCAGCCAATCTATACGAAGTTATTCA 55610 36 100.0 29 .................................... TCCCTACGAAATTCCATTGTTTCAGAACC 55675 36 100.0 30 .................................... GCCAGCTCGTCATAGGTATAGCTCCAACTG 55741 36 100.0 30 .................................... GGTCTTTTTTGTCTGCTGTTTCCAAAACAG 55807 36 100.0 30 .................................... ATTTTAATACTAAGAAATTAACCACCGTAA 55873 36 100.0 30 .................................... TGTTAGCACGGATTATCTCCTAGGGCGCAC 55939 36 100.0 30 .................................... CCCTCCGTAACAGTGTACATAAGAAAGAAA 56005 36 100.0 29 .................................... CTAGAGGCTAAAGCTAGTGCTGCTACCCT 56070 36 100.0 30 .................................... ATTTGGCAAGGATATCAAAACCCTGCTCAT 56136 36 100.0 30 .................................... AAACAGCTTCAGGTGGTGCTATCGGACGCT 56202 36 100.0 30 .................................... GAGTCGATAGTGGCCCGGCTTCCGGTTCTT 56268 36 100.0 30 .................................... CTATTTCCAAGTTGTCAGACCTACTCATTA 56334 36 100.0 30 .................................... TGCCTTTGACCTCAAGCAAAAGCTTAAAGG 56400 36 100.0 30 .................................... TCATCTTCCACCTCCTCAATCTCAATGCCT 56466 36 100.0 30 .................................... TAATGTGTACTTCGTGAACGTTTCGACTTG 56532 36 100.0 30 .................................... AATTTGCTATGACAGTTAATGCAATTTTAA 56598 36 100.0 30 .................................... TGGGACCATCGTCGAAGGGCGAACTCACAC 56664 36 100.0 30 .................................... CGTCGTTTGGTATAAGGAAGTTTCGTCTGA 56730 36 100.0 30 .................................... AATCCTGCTCTGAATGTCCATATCAAGATT 56796 36 100.0 30 .................................... CTCCGCCCGGTTTTAGGTGGTTGTTTGCTC 56862 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================================================= ================== 45 36 100.0 31 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : GGATGATTATCTGACTTACCAATCTTTTGTAAAGTGTTGCAAACGCCTCCAAATGATGACAGAAAAATTTCCTAATATTTATGTAATATCTTTTCCTTCAAATGAAGGCTATCTTTATATCAACAGAGAAAATATGGAATTTGTTAATATTATTTCTGGTTTTATAGAGCATTACTATGAGTTTCGGTTTATGTATGAAAGTTTTGTACAGCGTTATCCATCCAATGAGATTCCTAATGAAGAAGAATTTCTAATTTCTTTGCAAAAAATTTCTCCTTATTTATTTAGCTCTGATGTGGAACATATGAGTCTTTCGATTTATGATATGGTCACTTTAAAAATTATGAATAGCTTATACCAATATGATAAAATTATTGATTTTAAAGTACAGATGGCTAATCCATTATTAACAAATTTTTTAAAATATTAGACTTGACAAGCTTTTGGGGAGAATCTATAATCAGTATGAGAGTACAAAAAGCAAAAATTTTTAATTTGAG # Right flank : CAGAAGAAAGCTAAGCGGACTTGGTACTGGTCTCATAAAATTGCTTTTTATCTTGCTAACTTTATGACTGGGATGCGAGTAACGATGTGGACGAGGTTGGAAGAATTCGAAAGTGAAGATTAGAAGGAAAAGTAATCATGGAAAATGTAAGCCAAATCTCCCAATGTCAGACTCTTTGGGCTAGAAATAAATATCTGGTGCTCAGTCATTCCAGTAAGATCTATCTGGAAATCCGTCAGTATCTGAAAAGCGATTTGGTGGAAGCGGCACATGTCCAAGACTTGATTGATCAGGCGGTAGCCCTGCCTGAAAATCGCGGTCAGGTCTGCAATGCCTTTCAGCATGTTTGGGGCTATTTTAAGAAAAAAGCCAGCCCAGCTGAAAAAGAAAATTTTATGCTTCTTTTAGAGCGATACCAAGCAGGTCAGGTGGAGCAGGAGGTTTTGGTAGAAGCTGTGAAAGATTTGCTTAGAAAGTACCCCAATCCCTATCTGCAACAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 69826-71651 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJNA01000003.1 Streptococcus cristatus strain BCC51 D8872_contig003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ==================================================== ================== 69826 23 100.0 49 ....................... TTTTGTAAAAATAGTAGTTCGTCTTCGCTTATTTTGTTAGAACCCCGAA 69898 23 95.7 49 ........C.............. GCTTGAGCCATGTTTTCAAATGTAGACCAGTTTATGTTAGAACCCCCAA 69970 23 95.7 48 ..............T........ AGCTCTGGATTTTCGTAGATGTTACCGATGATTTCATTAGAACTCCCT 70041 23 87.0 48 ........C.....T......G. GGAAAAATAGCTGCACGATGTTCTGACCCAAGACCATTAGCCCCCAAA 70112 23 95.7 49 ........G.............. AAAAAGTTCTTTTTGCGAAGAAGCCCCATTGGTTGGTTAGAACCCCCTA 70184 23 95.7 50 T...................... TCATATCCCATTTCATCCAATCGACCTACAGAAATTCGTTAGCCCCCCTA 70257 23 95.7 51 ..............A........ GCATTGCTTGTTTGAGTAAAGCACATTATTGTAACTTCGTTAGCCCCCCAT 70331 23 91.3 49 ..C...........T........ GCGAAAAGGTGCGACCGAGAATCTCGAAAGTGTATGTTAGACCCCCAAA 70403 23 91.3 52 ........C.....T........ TTACAAACCATAACCAGAACAAAATAGCTTTTCAACTGTTAGCCCCCCCCCA 70478 23 82.6 50 T.......CA....T........ TAATTTTGGGAGCATATAATTTCCCACTCTTTTTTGGTTAGAACCTCCCT 70551 23 91.3 47 .........T....T........ CTGAATGGAATAGTGAATGAAGGAGTATCAGTTGGTTAGAACCCCCT 70621 23 100.0 50 ....................... CTAATAAAACTTACAGCAGGGGTAAAGCCCTCAGACAGTTAGAACCCCCT 70694 23 95.7 49 ..............T........ AAAAAATCGTTTGTTTTTCAGGTAATTGTAATTTCAGTTAGAACCCCCT 70766 23 95.7 49 ..A.................... TCTTTTGAAATTTTATAGGCAAACGCTTCCACTGCGTTAGAACCCACCT 70838 23 100.0 50 ....................... AAATGGGTTGGTTTTCTTACCAAATTGAGCCCCAATGTTAGAACCCCCCT 70911 23 100.0 49 ....................... TCGGAATTGGAAACCTACAGTACCTGCAACGTTGAGTTAGAACCCACCA 70983 23 87.0 49 ........C.....T..T..... TCATAGGTTACAGCAGGATAGCAATTCTTTTTCAGGTGAGACCCACACT 71055 23 87.0 49 ........CA....T........ GCACAAGCCCAGTGCGCAAGCAAAGCGCTATCCATCGTTGGAACCCCCA 71127 23 82.6 48 T.......CT....T........ CAACTTGATAGGCTAGTTCCTTCTTTTTCCATTAGTTAGATCTCTCCT 71198 23 91.3 48 .............CT........ CTGCTTTCAAATTACTAAGGTAAAACCTCGTATCTGTTAGCCCCCCCT 71269 23 82.6 48 ..A.....CT....T........ CAGATAGGACAATTGTCGCCAACTAACTCGAACCGTTAGAACCCCCAT 71340 23 91.3 51 ........C.....T........ CATATTTTAACTTCATCAATGCGCCCATTATTTATGAGTTAGAACCCACCT 71414 23 95.7 49 ..............T........ AGACCGTATTGTTTTGCATAGTTCGGATATTTTTCGTTAGAACCCTCCA 71486 23 91.3 49 T.............T........ ACGATACTGAGGAATTAAACGTATAGACATTCTATGTTAGAACCCTCCA 71558 23 91.3 47 T.............T........ GCCTTTTCATTGTCTACAGAAGTATTGGCCTTAGTTAGATCCCCCCT C [71580] 71629 23 82.6 0 .................A..GTG | ========== ====== ====== ====== ======================= ==================================================== ================== 26 23 92.2 49 AATCCTCGAGAGGGGACGGAAAC # Left flank : CTAGCAAAGCTTTTGGAAGGCTATGGCGTGAGGGTTCAGCGGTCCTGCTTTGAGCTGGCTCTTGATAAGCTGGACTTTGACTGCCTTGTGAGGGAGCTGAGGGCCTTTTATCAGGCAGAGGAAGGGGACAATATCATTATCTATCTGGGGCACAAGGAAGAAGAGGCTGGGACAAAAGTCCTAGCCTCTCAATTGTCTTTGGATTGTCGAGCAAGACGCAGTGGCTGAGTGGGCTCTACTACGCTGATTTCATCAGCATTTACAGCCCTACTCAACTGTGCGGAGGTGGAACGACAAAATCGAATTCTAACGAATTACCGATTTCTGTCCCACTCTCTATGATGGCGCGGAGTTGTTAGAGGATATTCTGTTCTTTTAAGCTGTTATTTATGGGCTAGGCATGGTATAATGAAGTTAGGGTTTAACTAGTTTCTAAGGGGCACTAGATGTGGTAGGGGTCTTCTGAGGCTTTATATAAGATATGCCGTTAGACCCCAAAA # Right flank : GGATAGGGGCTTTTTTACTTTCCCTCAGCTTCTTGCTTTGCCAAGAAAGAAGGATGTTGGCTGCTTAAGCTTTTTTAAACGCTTCAAAAACATTGACAACGCTTTCAAAACTTGATATAATAAGCTCAGTAAATAATAATCGTTCTAAAGGGCGCCATGAAATCGGTGAAACATTCTTTTGCCTTTTTCGGGCGCTTTTGCAGCATAGAGAGGAGACCGTGTGAAGAAAGTAGAGTTACATTTATCAAAGACAAAACTAAAAGATGAAGAATTGATCAGTAAGCTTCAGGGCTTTTTGATGGCAAGCATTTCGCCAGACTTTGCGACCTTTCTTCATGAGCAGGAGACCAATCCCTACTCGATGAATCTGAGCTCCACTCGCGATGAGTCGGTGTGGGTTGTCAATTTGCTTTCAGAAGAGGCGGAACAGCAAATGCTAACTCCCTTATTAAACTTGGAAACCATCAAGCTAGAGAGCTACGCGGAGGAAATCCTTGTCA # Questionable array : NO Score: 4.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:-0.12, 8:1, 9:0.21, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.10,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [31-28] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //