Array 1 8613-11590 **** Predicted by CRISPRDetect 2.4 *** >NZ_JENV01000008.1 Clostridium novyi B str. NCTC 9691 Contig8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 8613 30 100.0 36 .............................. CCAATGTTTTTTGAAGGTATTGTTGCTGGCAAAAAA 8679 30 100.0 36 .............................. TCTATAGCATCTAAAGACTTGTTTTGATTAAATTTA 8745 30 100.0 35 .............................. ACTGAATCTGCCCAGACTTCTTTATTCCAATCTAT 8810 30 100.0 36 .............................. TTTGAGTTAATCGATGTATCGGAAATTTTACTATGT 8876 30 100.0 36 .............................. ATGCAATCTACTCCAAATTCATCTAAATCAGTTAAA 8942 30 100.0 37 .............................. ATACAGACGATCTAGTATTAGATATTCCAGTTGCTGA 9009 30 100.0 36 .............................. CTGTTAGGTTGCCAATTTCCTATGATGTCTTTTGCT 9075 30 100.0 34 .............................. AATAAAAAAAGCTGGGGATTGAACCCCAGTTTAA 9139 30 100.0 34 .............................. AGAAAATGAAAAAATAGACGCACAAAGAGTAAAA 9203 30 100.0 36 .............................. TAATGATTACCGTATTCTTCTTTAAGTTCGGATAAA 9269 30 100.0 34 .............................. GGATGAAAGGCAGAGATTTAGAGTCTATGTCTGA 9333 30 100.0 36 .............................. TTAGAAAGAAATACTGCTGAGTGGAATATTTTAAAT 9399 30 100.0 36 .............................. AGTTCGCGGATTGTGCAACTATAATTGGGACTTTAA 9465 30 100.0 37 .............................. GCGAGACGGCAACCCCTAATGATTATGATAACAACGG 9532 30 100.0 36 .............................. ACTTTTTTATTAATTATTTGTTCTTCTGGATAACCT 9598 30 100.0 34 .............................. ATAATGCATACATGTGCTAATTTAAGTTTACATT 9662 30 100.0 35 .............................. TAAATTTTACCTCCTTTGTGTCCTTAAACATATAA 9727 30 100.0 35 .............................. TTCAACTCTTTTAGCTTACTAAGCATTTCTAAAAC 9792 30 100.0 37 .............................. GCATCAATATTTTTTTCATAACCTTCTTGAAAACATT 9859 30 100.0 35 .............................. GCTTGTTGAGTAGATTTAAAAGAATCTAAAACTTT 9924 30 100.0 36 .............................. AGTGATAATAAATGGCTTATATTTGTAAGCAATAAA 9990 30 100.0 34 .............................. TTCGTTTCATAAACCATATGTCTAAATTTAATTT 10054 30 100.0 35 .............................. ACATAAGTGTTTCTTAATCTTTTTTTAACTTCATC 10119 30 100.0 36 .............................. GTTTTAAATCTTTCAGGATCTGCATTGTTTTCGGAT 10185 30 100.0 34 .............................. TTATTTGTATGATTGTTGGCAAAAGCTAAAATAT 10249 30 100.0 36 .............................. CATCTCCTCGATAGAGAAAGGTATACGAACTATAAC 10315 30 100.0 34 .............................. TCTACATATAAGCTTTTAAACCATTCTCTTACAT 10379 30 100.0 36 .............................. TTGCTTGGTCTTCTGAATTGGCAATAATATCAATGT 10445 30 100.0 35 .............................. AATTGATATTTATTTCTGATAGCCTGGGCATCTAT 10510 30 100.0 36 .............................. CTAATGGTGGGGTCAGCTTAAATGGGTCACATAATG 10576 30 100.0 36 .............................. AACATTTCCGAGCCTTTTTGGCGTAAACGTGCTGGT 10642 30 100.0 36 .............................. TCATCTAGTGGAAAAAGGTTAGCTGAATGTATTGTA 10708 30 100.0 36 .............................. TTAATTTGCCTCCCTTCTCTTATATTTTATCGCTTT 10774 30 100.0 37 .............................. AATAAACTAATAACATCATTGTTATACCAATATTCTA 10841 30 100.0 37 .............................. GTTACACAAGAAGTTTTAAACGTTCTTAAACGCTTCC 10908 30 100.0 35 .............................. GTATCAGTTATAACCAATTCGTTTTTAAAAATTTG 10973 30 100.0 36 .............................. TAGTACGACCTGCTTCCCTTGCTGCATTAGTTAAAT 11039 30 100.0 36 .............................. TCTATATTCTTGTTAACTTGAATAGCTAACATTGAA 11105 30 100.0 35 .............................. ACGTATACAAGCTATTGATGATGAATTAAAAAAAC 11170 30 100.0 35 .............................. TCAAAAACAATACTTAATCCGGATTTTTCTATAAT 11235 30 100.0 36 .............................. AATATATTGTCTATATTCTTTTTTATTTTATATAAA 11301 30 100.0 36 .............................. GTTAGTAGAATTATTTCTCTAGCATTACTGCCGACG 11367 30 100.0 36 .............................. TCAGTTCTGTAGACTTTTATATTTCTTGATTGTAAC 11433 30 100.0 34 .............................. TTTTTATTCTGCATTCTTTTTCTTCCCAAACACT 11497 30 100.0 34 .............................. ACAACCGAAATATTTTCCCAGCACCCTTAAAAAC 11561 30 93.3 0 ........................C.T... | ========== ====== ====== ====== ============================== ===================================== ================== 46 30 99.9 36 GTTGAACATTAACATAAGATGTATTTAAAT # Left flank : AAGCCATTTAGGCTTAAGGATAAGATATAATGAGTAAAAAAATTAATTATAATTATGCATTTTTATTTTATGATGTGAAAGAAAAGAGAGTAAATAAAGTGTTTAAGGTTTGTAAAAAGTATTTAACTCATTATCAAAAATCTGTTTTTAGAGGTGAGATAACACCTTCTAATATAATAAAATTAAGAGAAGATTTAAAGAAAGTAATAGATGAAAGTGAAGATTTTATATGTATAATTAAATTATTAAATAATAAAGTATTTGGAGAAGAAGTGTTAGGAGTAGGTGTTGAAACTGCAGAGGATTTAATTTTATAAAATTATTATCCCAACCGATTAAAAAATTTAAACTAGTCCCAATCCTTGATTTAACTGTTTTTGAGTGGTATTTTGGTTTAAAAAATTAAATTATGAAAGTTGGTTGGGAAAAAACTAACGAAAGTGTTTATTTTCAATGATCTTAAAGGTATAATATAAATAAGGAATAGCTATTTTACTATG # Right flank : TAAAAATTAGTTAAATACTAATACAACTTATTATAAAAAAATATTATAAATAATAAAAATTATGTGTATTTTAAAAATTTACTATAAATTAATAAAAAAATAACTATAATATTCAAAAGTTTAAAATACCCCTATAAGTAAAAACTTATAGGGGTATTTTAGTTATCTGGAGTAATTAAATTTATATTGTGTTCTTCAAAAAACTTAACATACTCTTTAGGTGGAATTCTATCTGTAATAAAACAAGTAATATCTTCTAATTTACAATAAGTTTTAAGAGAAGCTGTATCTAACTTTGAGTGATCTGCTAAAAGTATTACATTGGAACTATTTTCAACTACTGTTTTTTTTACTTCATATTCAAAATTAGATGAATTTGTAACTCCTTTATCAATAGAAAAACCTGTAGTGGCCATAAATGCTTTGGATATATTATAATTCTTTAAAAAATTCGAAGCTTCTACACCAATTAAAGAATTAGTTTCTCTAAAAAGAGTTCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [78.3-93.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 4650-5110 **** Predicted by CRISPRDetect 2.4 *** >NZ_JENV01000071.1 Clostridium novyi B str. NCTC 9691 Contig71, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 4650 36 100.0 34 .................................... TAAATCTTTATCTACTTTAGGAAAAGTAATATCT 4720 36 100.0 35 .................................... AAAATAATGGGAAAATTGGTTATGCTTCTTGTCAT 4791 36 100.0 35 .................................... TAAGAAAAAAGTTAGTATTAAAATATCTAACTACT 4862 36 100.0 36 .................................... ATAAGATTCCATAATTGAAATGATATTATTACGCTT 4934 36 100.0 35 .................................... GGTATACATGAAATGAATAAAGAAGTAATAGAAGA 5005 36 100.0 34 .................................... TGAAACAAAAGAAGAAGCTAATAAATGCATCAAA 5075 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================== ================== 7 36 100.0 35 GAATAAAAACATCTAAGCTCCATAGGAGATTGAAAC # Left flank : TATGAATTTAGAACAATGCTAGAATATAAAGCTGACTGGTATGGTAGAGAATTAATAATTGCACCATCAAATTATGCAAGTAGTCAAATATGTTCTAATTGTGGTTACAAAAATAAAGAAGTAAAAAACTTAGAACTTAGAGAATGGGTATGTCCTAAATGTGGAATACATCATCATAGAGATATAAATGCAAGTAAAAATCTGCTGAAATTAGCAATATAATTTTGGTAATTATCTGAGGTCGGTGCGATCTTGTAAGCTTGGGTAAACTTGTTCCCTTAGGAATATTGACCAAGAAGCTCCCACTTCAACGTAGTAAGTGGAGGGTAGTTCACTGCGCCAAGTTTAGTGTTTAAAAAAGTATGCTACCATGGCGATGGCTATAAATAGCCATTTTTATAGAATTTTTAATAACACTAATATGAAAATAAAACTAATAATAACCACTGTGCGAAAAATACTAGTCTATGGTAGCCTTTATAAGGCATAAAACGCCGGCT # Right flank : CAATAATTAAATCATATATTTTTCAAAGATTTTTTTAACTTTGAAATTTATATTCATGAAATTGTAAATGCGTCTTAAGATATTTTATAGCTAGTTTTAATATTTCACCTATTAAGATAATATCTAATTAAATTCTTATATAGTAAGATAAATTACAGTGTTGAAAAAATAAAGAAAAGAAATTAAAAGAAAGATGAGGTATACATATGAATAAAATTATAAATCAAGCTAAATTAATAAAAGATGACTTAATAAATTACAGAAGAACTATTCATAGTAATCCTGAAGTTGGTCCTAATCTACCAAAAACAAAAGCTTATGTAATGAATAAATTAAAAGAGTTTGGATATAATCCAAAGGAAATATGTGAAAGTGGCATAGTTGCTACAATTGAAGGAAATAAAACAGGAAAAACATTTTTACTTAGAGCTGACATGGATGGACTACCAATGGTAGAAGCCACTGAATGTGATTTTAAATCAACTAATGGCTGTATGCAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATAAAAACATCTAAGCTCCATAGGAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-88.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : NA // Array 1 69300-69917 **** Predicted by CRISPRDetect 2.4 *** >NZ_JENV01000018.1 Clostridium novyi B str. NCTC 9691 Contig18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 69300 30 100.0 34 .............................. AGTTTTTGTTCAAGTTGTGTCTAAAAAAAGAATA 69364 30 100.0 35 .............................. CCTAAGTTAGTACCATCATAATCCTTTAATACATA 69429 30 100.0 37 .............................. TAACAACATCAGGTATTAATACTTTAAATGCTCCATC 69496 30 100.0 36 .............................. TAGGAATTTAATTTGTTTCCTTAATGCTATTAGCCA 69562 30 100.0 36 .............................. TCTTTATGATACATTAACAAGAAAACACGTACCCTT 69628 30 100.0 36 .............................. ATCACAGATTCCACAAGGTTCTGCAATTACTGGGCT 69694 30 100.0 36 .............................. ATAACTTCATTTAATCACTTCCTATACTCGTGGCTG 69760 30 100.0 34 .............................. CCTCTCTTAAATTCCAACGTATAGTGGCTTGTAA 69824 30 100.0 35 .............................. TTTGCTATGTAAAAATAACATGCAAGAGTTCGAAA 69889 29 73.3 0 .............T....-.T.AA..C.TA | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 97.3 36 GTTGAGAATCAACAAAGGATATGTTTAAGC # Left flank : AATATACTTAATAAAGATAAAGAATATGAGTTTACTGTTGAGGATGAAGTTATAGCATATGACCAGATTAAAAAACTTTATGAGGCTATGGATAAACTGGAACCATTGGAAAGGGAGATTATTAGTAGATATTATATTAATAATGAAAAATTTAAGGATATTTCAGAAGATAAAAAGCTTTTATATGATAGGACTATTTATTTGAGGAGGAGAGCCATTAGGAAACTTAGAGGGATCATGGAAAAAAAACAATAAATTTAAAATATTATCATATAAAAATTGAATAAATATAATCGTATGTGTTAAAAATATAAATAAAATTATTACCAACCATAAAGGTCGACTTAGCGTCCTAAAATTGAGTAGTACCAATAAGTCTAATAAGATTAGCATGGCAACTCTCAGTAAGCCTCAATTTGATTGGGAAGCTTTGTGCAGATGCTAGTAATAGCAAGGCGTACAATGATATATCCATATTTAAAAATGGCTTAGATACAGAG # Right flank : ATAATAAATAAGTTTAAAATTAGTGTTTATTGGAAATATTATAAATATATATAATATTTTAAGTAAGGAAGATAAAACATGAATAAATGTATAAAAGTAGCCATAAAGAATTGTAAGGAACTAGATTATAAAGTTATGAGTGAAAAATTAAGAAATATACAATACTTAACATGTAAAGCTAGTAATAAAGTCATGCAAATGTATTATATGTGGGAGAATCAGAAAATAGATATTAAGAATAAAACAGGAGAATATCCTGATGATAAAGAATTATTTGGAAAGACCTATAGAAATGTAGTTGAAGGTGAAATGAAAACTATAATGAATACCATAAATACATCTAATGTAGGTCAAACCAATGCAATTATAATGAAAAAGTGGAATACTGATAAAAAAGAAGTTCTATCATATCAAAAATCTTTACCTAATTTTAAATTAAATATGCCTATATACATAAAAAATAAAAGCTTTTCAATAGTAAAAGGTACAAGTGGATATGA # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAGAATCAACAAAGGATATGTTTAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-91.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 79925-81080 **** Predicted by CRISPRDetect 2.4 *** >NZ_JENV01000018.1 Clostridium novyi B str. NCTC 9691 Contig18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 79925 29 100.0 37 ............................. TAAATAATCAATTTAAACTTAGCTTTCACCGAATTCA 79991 29 100.0 37 ............................. GTTTTTAGCCATTTTTCAGAAACATTAAATTCTTTAC 80057 29 100.0 37 ............................. TCCCCTCTATACTTAACAACATTATCTGCATTATAAG 80123 29 100.0 36 ............................. ATATTTTCTATTACATTTACTTTTTCGCCTTTGTAT 80188 29 100.0 36 ............................. CCTATAGCTCTTTAGTTTCTTCTAGTATATAGCTTG 80253 29 100.0 39 ............................. ACACAATATTTATTTTTAGGATTACCAGTTGTAGAATTA 80321 29 100.0 36 ............................. AAGAATGGGTTATTGCGCAACTAAAAAATATTAAGT 80386 29 100.0 38 ............................. AATTATATAGATAAGATTTTAAAATTAATAAATTATTA 80453 29 100.0 36 ............................. AAATAGCAAGACGGGTCAAGATCATAAAGTTTACGA 80518 29 100.0 38 ............................. ACCAAAAGCAAAGGTCCTATAGCTGCTACTACTCCAGC 80585 29 100.0 38 ............................. GGCCTTGTAAGACATCTTGATTTAATTTCTTTTCATAA 80652 29 100.0 39 ............................. TGAATTGTTGGAGAATAATTTAAAGCAGCTGGATAGCTT 80720 29 96.6 37 ..G.......................... CCAACCAATACATGCGGGAATTTATTCATGTCTACTA 80786 29 100.0 37 ............................. TCTATAAAAGAAATAAAAGATAAATTAAACAATGAAA 80852 29 100.0 36 ............................. GAAGCAATCGAGGAAATGCAGCGCAGAGGCTTTAGA 80917 29 100.0 38 ............................. TTAATGGAAGGCTTTGTTTTTATATATTTTTGATTAAT 80984 29 100.0 39 ............................. ACTTATATTTTACGCAAAATATTGCATTAACTCAAAGAA 81052 29 96.6 0 .........................G... | ========== ====== ====== ====== ============================= ======================================= ================== 18 29 99.6 37 GTTTTAGTTTAACTATGTGAAATGTAAAT # Left flank : TAATTATGAAGAAGGACAAAGAGAATCTCAAGCTGATTTTATATGCAAAAAATGTGGTTATAAAGTTAATGCTGATTATAATGCAGCTAGAAATATCGCTATGAGTAATAAATATATAACAAAAAAAGAAGAAAGTAAGTATTACAAAATTAAAGAAAGTATGGTATAATAAAACATAGTTAAACTAATAAAAACAGGGCGATTTAACGTCCTAAGGCTGAGAGAAGTTTTTTCTACTCGGCAAGGGTTAATCTCGATTGTTGTGTTACCGATCGAGCGTTTCACAAAATGCGAGAGAAATCTCGCATTTTTAATTTTGCAGTAAGGCTAGTTTTTATATAAATATGCTATAACCATTGATATTGCTAGGCTACAATAGGTTTTATTAAAAAAGCAAAAAACATTACTGAAGGTTCACTGCAAAATAGTGTATTTAAGTGAAAGTGAGATTGCTTGTAAAGCTAGGAGTATCAATATATTTATAAATTTCAAAATTTAGG # Right flank : TGAGCATAGCAATAAATTTTGTTTCATTTTGTTTAAGTAAGTTTTAGTAAAATACTATGAAGTGAAGGGATACGTATTATGAAATTTATCGAATCAATAGATCCTTTTTTGATGCAGTTGGTTATTGTTCCGCTAATAGTAATTGGATTAGGTGTTTTAGTAGCTTATAATATTAAAAATATATTAATTGGACCTTTAATAACATTGTTTTTAAATAGTTTATATGAAATTTGGTATATAAAACACTATTGTCCTGGATCAGAAATTAGTTTGAGTTCTTGGAATATTATTCTTCCAATGATTTCATTTACAATTTCTTTGATTGTAGTATTAATTAGAGAATAGGGTAATATTTAATAAAGATTATTTCTTAGGCTAGGTGAAATGTAAATAACCTGGATTTTCTTTAGTTTCAATAATATCAATACTAGGTTTTAGTTTAACTATGTGAAATAGAGAAGCAGAATATAAAAGCTGAAACTACAAACCATCCATCATGG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTTAACTATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //