Array 1 240674-239981 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_GL872364.1 Treponema denticola F0402 supercont1.1, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    240673	    36	 100.0	    30	....................................	AGCAACCGCCGTATTAGCCGTTTTATTTTC	
    240607	    36	 100.0	    30	....................................	ATCTTTCATAGACTGTTTCACTTGGTATAT	
    240541	    36	 100.0	    30	....................................	TCCTGTGCGGAAGCTCCTTTTGTAACGGCC	
    240475	    36	 100.0	    28	....................................	TTTTAAAAACTTAGTAAAATAAAAGGTT  	
    240411	    36	 100.0	    30	....................................	TGATGAGCTTTTAGTCAATCAGGCGTTTAT	
    240345	    36	 100.0	    30	....................................	GCGACACTGCGGACGGCGCGGAGCAGAGTG	
    240279	    36	 100.0	    29	....................................	TTTGCAAACAGGAAAATAACTCTTACCGA 	
    240214	    36	 100.0	    30	....................................	GACTACTTCACCGAAGCGGGGATTGCTTCC	
    240148	    36	 100.0	    30	....................................	CCTATAACACCGGTACCGGAAGAGAATACG	
    240082	    36	 100.0	    30	....................................	TCGAAGTCGGTCAGGCCCTCGCCGGTGGAG	
    240016	    36	  86.1	     0	..........................ACGAG.....	|                             	
==========	======	======	======	====================================	==============================	==================
        11	    36	  98.7	    30	GTTTGAGAGTTGTGTAATTTAAGATGGATCTCAAAC	                              	       

# Left flank :   TATTTCCGATGAATATAATTACCTAAAAACATGCACCATAAAAAGCGAAATATTAAAACATATAGACGATGTACTTCTTTCTTTGGATATACCTCTAAAACGGAGTGAAGAACTGGATTTGATCAGCATATTTAAAGCTGTTAACATCTCTTTTGAAACAGAATATAAAAATTTACTTGAAAAAATTATAGATTATATAAGCGCTTCTGTGGAATTAAATCAAATAAAATGCTTTATTTTTATAAACCTAAAACAGTTCTTAAATTTCAAAGACCTATCTGGGTTATATAAATTTGCCCGCTATATAAAAACAAATCTATTTTTAATCGAGGGGGCATACACATCTACAAAAGAAGATTGTGAAAAATCATATATTATTGATAAGGACCTTTGCGAAATATATTGACAATAAATACTTCTCATGGTAGTATTAAAAAGTAATCATCTTAGACTACCGCTATCAATAGTGTGATAGCCTCTCCACCTACGCCATATCTGAC
# Right flank :  ACAATGCTTAATGGAACCTCGAAAAATTTCATTTTTTGAGGTTCCTCTTGATTTTCATCATGTATAAAATATAGAATATTCATTTATAATAGGCTTTCCTTTTTTTTGATTTTTCCTTATAATATAGATATGGCTAAATTTAAACGAAAAACAAGAGAAGAGCGGACGTATGAGATAATAGAAGCTGCAAAAAAGGTGTTTTTAAAAAAGGGCTTTCATAATACTACGATGGAAGATATTGTTGCCGCTACAAGCCTTTCAAAAGGAGGAGTTTATCAGTACTTTAAAAGTACGAAGGCTATAATGTTTGCCATAATGCAGGAAGGAAACTATTTTCGATACAGACGCAACGAAGAAATCTTTAGTTCTGCAAAAAAAATTGATGACCCTTACGAAATTGTAACCCAAGCCTTAGAAGCAAAACTATTTGATAATGTTCCCGAAAAACGGCTTTATCTAATGTTTCTTGCCGAAATTCTATATGACAAAGAATATGAGAC

# Questionable array : NO	 Score: 6.20
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTGAGAGTTGTGTAATTTAAGATGGATCTCAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:66.67%AT]
# 	Reference repeat match prediction:         R [matched GTTTGAGAGTTGTGTAATTTAAGATGGATCTCAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [5-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.27,4.91   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
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