Array 1 163595-162371 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNDQ010000003.1 Pediococcus acidilactici strain 1001270B_150601_H6 NODE_3_length_221018_cov_97.763, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 163594 36 100.0 30 .................................... TTTGGGTGTTAGGAGATTTTTTATGAGTTC 163528 36 100.0 30 .................................... ATTTCAGTTTCGTACCCATTACGAAAGCGG 163462 36 100.0 30 .................................... GCTACATTTTTCGGAGTAATGCCCCACAGC 163396 36 100.0 30 .................................... AACAGTTCGACGGCTCGGATGAGATGATTG 163330 36 100.0 30 .................................... TATACCAAAGTTATTGTTTCGGTTGCCCGT 163264 36 100.0 30 .................................... TGACTACCAAAGTAAGAACCGTCACCATCT 163198 36 100.0 30 .................................... TCATTGTCATATAAGTAATCATTTAAGTCG 163132 36 100.0 30 .................................... ATCGTCTTCATCAACCCATTCAACAATCGA 163066 36 100.0 30 .................................... TCCACCAGTGCTTGTTGGTAAGCATCGCTA 163000 36 100.0 30 .................................... ACGGTTGTTTTAGAAACCTTGTATAATTCA 162934 36 100.0 30 .................................... ATATCAAAGTTTCTAATGTAGTGGCCGCGT 162868 36 100.0 30 .................................... ACCATCTTAATGGATGCTAACAAGATTATC 162802 36 100.0 30 .................................... TTACCTATATCAGCGTTTTACATTGTAGAG 162736 36 100.0 30 .................................... CTGTTGGCGAGCTTGCTCTGCACTAATGCC 162670 36 100.0 30 .................................... CGAGAAACTATCTACGACCACTTGTGTTGA 162604 36 100.0 30 .................................... ACGTTTAACGGTTACTTTATGGGGATTCCA 162538 36 100.0 30 .................................... CGTTCTACGCTGTTCATAAGTACCATTTGT 162472 36 97.2 30 ..............................G..... AAAATGCTGTGGCTTATGAACTCGATGACA 162406 36 77.8 0 ......A.......CC............C...TCAA | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 98.7 30 GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGATC # Left flank : CCAAGATTTAGTTATTCAAAAATATTTAACTAAGATTGAACGGGTTTTTGCCGAAGGGTTGGTGGATGAGCAGCGTAACCAAATTCACGATCAAGTTAACCAGCTATTTAATACGGTTGCTGAACAATTATTTATGCTAGATTTACCGATTAGCGTTAATTATGATTTTGATTTGAAAAAGTTATTGAAGTATTGTGGAGTGCACTTTGATCTGCTAAGCGTGGGTAACCCGTATGGTATAATTGAAGCGATTTTGAAGATTCACGAGGAGTGCGCGATTAATTCGTGTGTCGTGTTAACTAATGTTGCACATTATTTGACAGCGACCCAAATTGGAGAGCTTACCCAGCTAGTAAGTCAAACGAATCAAGCACTCTTACTAATCGAATTCACAGAAATAGGTAATCAGGAGGCCTATGGAAATAGCGAATTCTACTACATTGACAATGACTTTGTTGATTGGCATCAGTAATTGATGAAATTTTAGTTAGAAAATAACG # Right flank : AAATAGACATGATTATTTGTTTTAATATTGCAATCCTTAAATCTCCCCCAGCAAAGCAACGAGCTACTTGATAAAGTGTGACAGCTTTTAAGTAGCTTGTTGTTTTTTAGTAATAAAAAACAGCCCAACCGAATCCCAATCCAGTCAGACTGTCTTAAATTTCCTACATCACCAGCGGCAATACCACCAGGCCGTTCATCAAAATGTGTGCGATCATTGAAGTTTGGATGCGTCCCGTTTTATGGTACAGCCAGCAAAATAGCAGCCCAATCGCGGCGTATAAAAAGATGTGGCTGTCGTTATGCATAAAGGCGAACGCTAAGCTGGAAATGATCGCCATGATCGTCAAGCCTAAGTTCGAGCGCATCCCGAACAGCGTGCTTAAATTGCCAAACAAAACTTTTCGAAAAACTAATTCTTCCATAATGGGAGCTCCAACGGTGATTGCCAACACAAAAAACGGGTTGATTTTCGCTAGGGTAACTAACGTAGCCGTGTTC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGGATGTTAAATCAATAAGGTTAAGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //