Array 1 471411-472415 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNYC01000001.1 Escherichia coli strain HH19C NODE_1_length_559264_cov_185.629641, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 471411 29 100.0 32 ............................. AGATCACACTTACCCTGCAAAATCTTAATGGG 471472 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 471533 29 100.0 32 ............................. CTACCGGGACCGTTGGTTTCCACCATGACCAG 471594 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 471655 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 471716 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 471777 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 471838 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 471899 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 471960 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 472021 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 472082 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 472143 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 472204 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 472265 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 472326 29 96.6 32 .A........................... GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 472387 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 498115-499851 **** Predicted by CRISPRDetect 2.4 *** >NZ_VNYC01000001.1 Escherichia coli strain HH19C NODE_1_length_559264_cov_185.629641, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 498115 29 96.6 32 ............C................ GTCAACTGGCACCACAAAATGATGGCGTCGAA 498176 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 498237 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 498298 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 498359 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 498420 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 498481 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 498542 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 498603 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 498664 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 498725 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 498786 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 498847 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 498908 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 498969 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 499030 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 499091 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 499152 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 499213 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 499274 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 499335 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 499396 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 499457 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 499518 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 499579 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 499640 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 499701 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 499762 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 499823 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 29 29 98.4 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.97, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //