Array 1 1-277 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHFN01000247.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N44707 N44707_contig_248, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1 27 93.1 32 --........................... GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 60 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 121 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 188 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 249 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 5 29 98.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : TTAAATCCATATACGGGCCTTGCGGGTTTGCCGTGTTCCCCGCGCCAGCGGGGATAA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.68 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-1045 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHFN01000215.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N44707 N44707_contig_215, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 1 27 93.1 32 --........................... CCGCTGACGCACTGGATCAACCTGACGCAACG 60 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 121 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 182 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 243 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 304 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 365 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 426 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 487 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 548 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 609 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 712 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 773 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 834 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 895 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 956 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 1017 29 96.6 0 .....T....................... | ========== ====== ====== ====== ============================= ========================================================================== ================== 17 29 99.0 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GGTTAACCAGGGGTTTTTCCCCACTATTTCGCGTGTTCCCCGCGCCAGCGGGGATAA # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.68 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 49-808 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHFN01000061.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N44707 N44707_contig_61, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 49 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 110 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 171 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 232 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 293 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 354 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 415 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 476 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 537 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 598 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 659 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 720 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 781 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CAGCGGGGATAAACCGCCGGCATCAGCGCCGATCCGTTCATAGTGCCCG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //