Array 1 448-1935 **** Predicted by CRISPRDetect 2.4 *** >NZ_MNOH01000040.1 Neisseria meningitidis strain S00-1279 12-461_contig41, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 448 36 94.4 30 ........G...A....................... GCGGAACGGGTTGACAGACTGAATTTGAGT 514 36 97.2 30 ............A....................... ATCACTTTTAAAGGCGGCATCGGCTGGTTT 580 36 100.0 30 .................................... AGGGGTCGTGAATGGAGTTCTTGCAGTTCG 646 36 100.0 30 .................................... TAAGCGTTTCTTTTTTGGTCTGCTTCTGCT 712 36 100.0 30 .................................... AATCAGACCGACTTTACAACGAAGGTTTGA 778 36 100.0 30 .................................... TGCTACCAGCGACAACAGGCATTACGCCCA 844 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC 910 36 100.0 30 .................................... TCAGCCTCAAATACATCCGCCAAATCGTTG 976 36 100.0 30 .................................... ACACAATCTCCGCCGTTCCAATCAAATGTG 1042 36 100.0 30 .................................... CTGATGAAGATACAACCGCACTAACTTTAC 1108 36 100.0 30 .................................... AATGATGTATATAAAATGCCGTAAAAAATG 1174 36 100.0 30 .................................... CGTCTGAAGGTTTGCCCATCTCCTGACAGG 1240 36 100.0 30 .................................... TCGATTGTCTATGAAAGCACTTGATGATTT 1306 36 100.0 30 .................................... CTCTTCATTGAAGAAGTTATAAGCCTTTGT 1372 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 1438 36 100.0 30 .................................... GCCTGCGTACTTGGTACGCTGGTCGCCTCC 1504 36 100.0 30 .................................... TTCATAGATCGATGCATGAGGTTTTCATGG 1570 36 100.0 30 .................................... AGGTCAAAGTGTCAGGCAAATTTAAAGGTG 1636 36 100.0 30 .................................... AAATCCATTTATCGCCCACCCTTTCCGGCC 1702 36 100.0 30 .................................... TGCTGAAATTATGGCAAGTATGGGGCAAAG 1768 36 100.0 30 .................................... TAGCAAACAAGGAATATTCAAAGTCCTTTA 1834 36 100.0 30 .................................... CGGCAATGCGGCGGCTGTGTTGGTTGGCGA 1900 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 23 36 99.6 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTGG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : NA //