Array 1 43447-43046 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNKS01000001.1 Streptomyces sp. KS_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 43446 29 100.0 39 ............................. AACGCCCCGCGCGTGGTGCTGTTGTTGTGGACCTCGGTG 43378 29 100.0 32 ............................. ATCGACAGCCACGACCTGGGCGAGAAACTGGG 43317 29 100.0 31 ............................. ACGAGCGTGCCGAGCTCGCGGAGGTACTTCA 43257 29 100.0 32 ............................. GCTATCTACGATTCCGCGAACCTGGACGACGA 43196 29 100.0 32 ............................. GGGGCGAGGCGCACTTGAGGTTCCGGGGCGTG 43135 29 96.6 32 .....G....................... AGGTAACGGGAGGCGGTGGCCAAGTGCTTCTC 43074 29 96.6 0 .....................A....... | ========== ====== ====== ====== ============================= ======================================= ================== 7 29 99.0 33 GTGCTCTCCGCGGGAGCGGAGGTGAGCCG # Left flank : AGCGGCTCCTTGAACCCGACTCCGCCGCGCAAGAGCCAGAGGACTTCGAGGACGAAGTGGTGGACCTGTGGGACCCGGTAACGGGAGCCGTGCCCGGCGGCGTCAACTACGCCGGCGCACGCGAAGAACCCGGCGCGGCAGGCCGGTGACCCATGCCGTCAATGATCACCCTGTCCGTCACAGCCGTCCCCGACCACTTGCGAGGAGCACTGACACGCTGGCTACTGGAAGTCACACCTGAGCTATACGTCGGAACGGTATCGGCAAAGGTCAGAGACGAACTCTGGGCAGCTGTCACCGACTGCACAGGGGACGGACTCTCGGTAATGGTCTATCCGACCGACAACGAACAAGGCTTCACCGTGCGGATCTCCGGACACCGCCGCCGCCACCTGCGTGACTTCGACGGGCTCACGCTGGTCGCCTTCAGCTCACCACCCACAACGGGAAAACCAGATCACGAAATTGCAAAGCAGCTCTGAAAGTGGAGGTCGCGAAGG # Right flank : CGCCGGGGCCGGTACAAGGCGCTTTCCGAGGCGTGCTCTCCGCAAGCGCGGAGAGCACAAGGTGGGCTGGGTTCCGGTCGTCGGCCGCGGCTGCTCACCTCCGCCTGCGCAGAGAGCACCGGGCAGCTGGACGGGAACAACCGGACCGGCCGGCTCACCTCCGCCTCCGCGGAGAGCCCCGTATAGGACCACCCCCACGCGTGCGGGGAGCAGGAGTCCGGAGCGAAGCGGCCGTCACCGGAGGTGGGACCATCCCCACGCGTGCGGGGAGCAGACTTCGTGACCTGCATCGTTCCATGCGCACCACCTGGATTTGAACCACGCGGACGTCCGGCTCGGGGCCCTCTCCACCGGTCAGGGCAGGTGGAGCTGGCTGCTGGCCACGCGCCGCCGACGAGAGCACCTCCGCGGATCCAGAAACACAAAGTTCCTCAATTCCGGCCTCGACGCCAGGGACGACACCCCCGCGAGGCGGGGAGCGGAACCGCATGGTGGCCGAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGGGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGGGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 53009-53317 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNKS01000001.1 Streptomyces sp. KS_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 53009 29 100.0 32 ............................. GCAGGCAACTTGCCGCTCATAGCAGCCCCGTT 53070 29 100.0 32 ............................. GTGCCGCGCTGGGACGTCCGGACGTAGCCCTC 53131 29 100.0 32 ............................. GCAAGGGAGCCTTCGTTCGCGATCCGGCAGAC 53192 29 100.0 32 ............................. AACACCACCGCGGACGTGAACACGCCTACCTC 53253 29 96.6 7 ............................C ATTCCTC Deletion [53289] 53289 29 79.3 0 ............C......G.A..GT..C | ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.0 27 GTGCTCTCCGCGGAGGCGGAGGTGAGCCG # Left flank : TTGTCATGGTCGAGCCTCTGCTTCTCGACTCCCGCGGCATGCGCATATCCAGGGTCGCTCACGAGGTCGGCATAGGCCTCCCGCGCCATGACCTGAAATGCCGGAATGATCTTTCCGACGTCATGTAAGCCGGCCCACACACTCACCAGGCCCCGAACCTGCCCCTCGCTAAGGCCCACGGCACCAGCCAGACGCGCTCGCGCAGCATCCGTCAAAACCCGGTCCCACAGCACACCGGCAACCGCCGCAGTGTCCAGCAGATGACAGATCAACGGATACCGACGTGCCAGCCCCCGCTCCTTACCCCACAACCGCCCATCGACCACCGGCTCCGACATAGCCCACCCCCATCACGACGCTGTGACAGCAACAGGCATACCAGCGCCCACTGACAACGCCCCCACACAGCGCTTCACAGCGGTAGATTCACGCACATGCACAACCCCCGCCCCTTGAGTCAAGAAAACGCAAACCGCCTCTAACGCCGCAGGTGGCGAAGG # Right flank : CCCGCTCAAGGCGGTGCGGGTGCGCAGGGGGAGCGATCGGATTTGGTCACGGTCCGCGATCGACCGGTGTGCGGCGCCGGTTGTGCGCCACGATGGCCGAGGTTGTTGTCTCGAGGAGGAATGTCCGTGGGTGACCACCGTAAGTCCGATCCGGATCCAAGCCAGGGCAAGCCGCCGCCTGGGAACTCTGACGGGAAGGTGCCCGACCCGCCGCCCCCGTCGGGAAAGCGGCGGAAGTAGGCGTCCTCCATGTCTGAACTCTGCGAGCTCCAAGGCCGCCTGGAAAGCGCCATGGAGGCCCAAGGCATCTGGCCGGCGGACTCGCCCTGGGTCCGCCGGGCCGCGCAGGATGCTCCACGGCACGCCTTCGCCCCAAATCGCGTGTGAGATTGGGACGGCGACATCTACGCCCCGGTCGACCACGCTAGCGATTGCGCTCGGTGGGCGAGCCTCGTTTACGGCGGCGTCTACGACTCCACCATCACCCAGGTCGCCGACGG # Questionable array : NO Score: 5.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.52, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGGAGGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGGAGGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.80,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 54916-55937 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNKS01000001.1 Streptomyces sp. KS_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================================================================= ================== 54916 28 85.7 33 ...TTA..................G... GACCAAGGACGCGGCGACCAGAGCGCGCGAAGG 54977 27 78.6 28 ....T...........-T...CC..C.. CCGGCCGACTCTCGCCGGACGCTGAGGA 55032 28 82.1 119 ....T....A..............G.TT GATCCTGGCCAGGTAGTGCCTGCGGGAGCCGTGTGGCCCGGTAGATTCAGGCGGGTGCATGATCGGCGTTCCTTGAATCACGAATCGGCAAAACGCTCTTAACGGCGCAGGTCGCGAAG 55179 28 100.0 33 ............................ GATGCGCGAGCTGAACAGGGCTAGCGAGGCCAA 55240 28 100.0 33 ............................ GTGGTGCTGTGTTGCTCTCCGATGATCCCACGG 55301 28 100.0 33 ............................ GGGCGGCCGCGTGCTGGTGCTGCTGCCGACTCT 55362 28 100.0 33 ............................ GCAGGCGAACGAGCGCAACGGCGACCAGCTCAC 55423 28 100.0 33 ............................ CCGTCACCGCACGAGGAGAGAGCAGTGAACGAC 55484 28 100.0 33 ............................ AATCCAGGTGTCCGCGAACCGGCAGGCCGACCG 55545 28 89.3 32 ....T.......A...........G... GCTGAGAGCCCCGCGGTAGCGAGGCCCCAGCA 55605 28 85.7 33 ....T.......A....A......G... GTGGCTGCGCCGGCTGGCGGCTAAGGACCAGCA 55666 28 85.7 33 .C..T.......A...........G... GGCCGAGCAGAGCATGGCTGCACAGCCGACACG 55727 28 89.3 33 ....C.......A...........G... ACGACCGCCTGGGGCAGCACGCCTTCGAGGACC 55788 28 96.4 33 ....T....................... GTCGGGCCCTGCGCACTCTCCGCGGCCGGGCGG 55849 28 89.3 33 ....T.......A...........G... GTAGTCGGTCACCCGCTTCGGCCGGGGCGGAGC 55910 28 85.7 0 ....T.......A............A.T | ========== ====== ====== ====== ============================ ======================================================================================================================= ================== 16 28 91.7 38 GTGCGCTCCGCGGAGGCGGAGGTGAGCC # Left flank : CGGATCCGCACGGAATCCAGCCAGGGGGTCACCGCCTGGGTTCATGACGGCAACACTTCCTGGGCCACGATCGTCGCTTCCGAAGCCGGCCGAACTGTGGCCTACCAGGGTGGCCCGCGGCGCTTGGCCACCGAGCTGGGAGAGGCCTGGCATGCATGGGAGACGAGCGGCGCTCCCGGTCTGTACGACTACGGCATGACACGTACTCCAGAGGAGCAGTACCTCTGGAGCAACGATCCCGACACCGGCCCACGATGGCCAACAGCCGCACCTCTGCTCGGCACTGCCAAGCAATAACCTGCGCCAGCCTGGGTGGTGCACTGCCCGGTCCAGCCACTCCTGTGAGCTCGGCTGTGGCTCCACCAGGATTCCACCAAGTGCTCCCCGTGCCCGAGGGGATGGTCCCCGCGGCGCGCAACGCAGCCCGTGTGTCGAAGGCCTGCTCCCCGCACGCGCGGAGGTGGGCCGGCGGCGGCAGAGAGACTACGAAGGCGGCGACA # Right flank : TGCATGGTTGAACCGCGGGCTACAGGCCGTTGGTGTCCAGGTCGAGGCCGAATGGCTCCGGGATCCGTACTGTGGTGCCGTAGGGGTGGGGCCGTCTGCTCGTGTGTAGCCGAGTTGGCATGGCTCCGAGTACAGAGTTACCGAACGCTCTTGACGGTCGACCAGTAGGTAGAGCGGCGCCCCGTACTCCGCGTACCGACGGCGTTTCACTTTCCGCATTGGACTCGCTGGTGACCTCGACGACGAGGAGTGTGTCCGAGGGCAGCAGTGCACCAGCGCCCTTTGCGACCGCGGCGGGTACCACCGCGATATCTGGTACGTACCAGTTGCTGGACCCGGGCAGGTCGAGGTTGCCGGAGCCGGTGACGCAGTCGAGTTCGCGGGCGCGGGCTCGGATCTGGTCGCGGATCGTCTCCGCGGTCGTTTCGTGGTCCCAGGTCGGTGACACCGGCTCGATGACGCCCTCGACGATCTGGGCGCGGTCGCCGCGGATGTGTTGG # Questionable array : NO Score: 4.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:-0.50, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCGCTCCGCGGAGGCGGAGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCGCTCCGCGGAGGCGGAGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [10-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 68510-70741 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNKS01000001.1 Streptomyces sp. KS_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================================================================== ================== 68510 28 75.9 61 .C..A.-.....CGA..........A... CCGGTCTTCTTCGTGAACCGGTCCACGGTCTCGTCGATTGGCGCGTCCCGGTCGCTACCGG 68599 29 96.6 33 ............C................ GCAGCCATTCCTGGTCAGCGGCGATATCCGGAC 68661 29 86.2 32 ............CGA..........A... ATCATGGTGCAGCGGTAGCCGTCACGGCGCTT 68722 29 75.9 32 ..C...G.....CGA....G.....A... TTCTCGTCCAGCAACCACTGATCGACGATGAC 68783 29 82.8 32 ..C.G.......C.........C..A... TTCACGCAGCGGGACATGCAGTTCGCCGAGCT 68844 29 75.9 121 ..C...G.....CGA.........G.T.. TTCCCGGCCGGGCAGTGCCTGCGAGGGGCCGTGGGGCCCGGTAGATTCAGGCGGGTGGATGACCGGCGTTCCTTGAATCACGAATTGGCAAAGCGCTTCTAACGGTGCAGGTCGCGAAGGG 68994 29 100.0 32 ............................. GCCGCAGGCGTAGAGAAACGAGGAGCCCGCGG 69055 29 100.0 31 ............................. GAGCAGTCGCCGACGACGCGGGCCAGAGGAT 69115 29 72.4 146 .......T..T.C...T....A..G.TT. ATCCTGGTCAGTTAGTGCCTGCGGGGAACAGTGTGGCCCGGTAGATTCAGGCGGGTGGATGACTGGCGTTCCTTGAATCACCAATTGGCAAAGCGCTCCTAACGGCGCAGGTCGCGAAAGTTCGCCCTGCTGTGGGGGCTGTTGGA 69290 29 93.1 32 ............C...............T TCTCCGGGGGTCACCTCCGGGCACATAGAGAC 69351 29 93.1 32 ...T........C................ TTCTACGTCGAGGACATCGGGCCGCACGTACG 69412 29 100.0 32 ............................. ACCCTCTGGGGTGTTCCGGCGGAGGCTCTGGG 69473 29 93.1 32 ..........T.C................ ACATCACCATGCGGGACTGCTACGTGGGGCCG 69534 29 86.2 32 ............C........A..G.G.. CCGAGGGCCGCCGCGCTGTTCGGCATCGAGTC 69595 27 93.1 31 ......-...-.................. ACGGTCGGGCAGATCCGGCAAGGTGTCGCGG 69653 29 86.2 31 ...T....T............A..G.... CCCCGTCCAGCAGCAGCGTGGCGGTACGCCC 69713 29 93.1 31 ...T.....................A... GAGGTTTGGTTGTACGACTTCCTGCGGGCCG 69773 29 86.2 32 C......T....C...........G.... GCCCGCTACGACGTGATGGCCATCGACCCGGC 69834 28 69.0 32 ............CCC.T..-.A..GT..C TCGAACCCCGCCCGCACGGCCAGGAGCCGAGT 69894 29 79.3 119 CG....C.....CCT.............. ATCATGGTCTGCCCGGCGTCGGCATCGTCGAGCTGCCCGATAGATTCAGGCGGGTGCATGACCGGCGTTCCTTGAATCACGAATTGGCAAAACGCTCCTAACGGCGCAGGTCGCGAAGG 70042 29 89.7 32 ............CT...........A... GACCTGCGCGTCCTCGACCTGCACACCCTGGC 70103 29 89.7 32 ............CT...........A... GAACGTCGAGAGGATCCGCTCGACGAGGTCGC 70164 29 86.2 32 ............CT...........A..A CCTCAACAAGTTCGCCAAGCAGCTCCGTACCT 70225 29 89.7 32 ............CT...........A... TCGAGGGCGCGGGCGAGCGCCTTGAGGTCCCG 70286 29 86.2 32 ............CT...........A..C CAAACCTGCTGGGTGGGCCGGGGCGCCCGGGT 70347 29 89.7 32 ............CT...........A... CGCGCCAACCGCAGGGGAGACGGACATGAAGG 70408 29 86.2 33 ............CT...........A..T TCGTCGGCGTATACGTGGAGGCGAACGCCATCA 70470 29 96.6 32 .........................A... CCAGCCCATCGGGAGGCGGATGGTGATGGCCG 70531 29 93.1 31 ............C...........G.... GCGTCTGCTTCTCACTGGGTTCGGCGGTGAG 70591 29 100.0 32 ............................. CTGACGAGCGGGCCCTGACGATGGCCGACATC 70652 29 96.6 32 ..........T.................. GTGGCGGCAGCGTGAACGCTCGGTCATCGCTC 70713 29 86.2 0 A..T.......................AT | ========== ====== ====== ====== ============================= ================================================================================================================================================== ================== 32 29 88.4 42 GTGCTCTCCGCGGAGGCGGAGGTGAGCCG # Left flank : AGAGGTTCTCTTCACCGGATTCGGCCTGCATCAGGCAAAGGGCGGGGATGCTGAGGTGTTCGCCGGGAGTGTTTGCCATGTTGCCGGCCAGGAGGTTCAGCGTTTTGTGGCCGCCGGCGAGTGCCCTGACGGCGCTGGTGTCGAGGATGATCACGCTGCGGTGCCCCGGGCGGCCCTGACTTTCTCAGCGGCGATCTTGTAGATGTTGCCGAGCACGTCGGGGGCTTGCTCGAACTCCTCCTCGGGGATGTCCACGCCCATCATGCGGCGTACGACCTCCCGGTCGGCGGCCAGCCGCTCTGCCCGCTGGGCTGCCGTCGGCTGCTGGGCGGCGAGCGCTTCGACCAGCTGGCCGATGCTCACGCCGCGCTCCTTGGCGAGCTCGGCAAGGTGATCGCGGGTCTCCCGCTGTACCTGGATCGTCGTCGAGGCCATAGGTAGACTATAGAGGCTTTACAGTGGCGGCGCCTCCGGGAAGATGAGCCGGGCAGAAACGTGCA # Right flank : TCAGGACACCGCACTGGTCACGGCGAGTTCTTTAGCCAGATGCCGGCGCAGACATTGCGGTGCGGCAGCGCGTCACGGCCGCACCGCACGCCGCCAACACCGGAGCAGGTTGCCGCTCCAGCCGCTTCGCCAGGGCGGGACGCTCCACTGCCACCAGGGCGGCGGCTGCTTCGGTGCGCCAGTTTTGCGCAGGCCTCGCGTTCGTGCTGTGCTCGCCGCCCGCTATCTCAGTTCTTGCCCCGGGCGGGGTTCCGCTTCGCCCATGGCTGTTGAGCGATGCCGCGGTCCTTCATCTGCGCCACGACCTTGTCATGCCACTCGCGCAGCCACTCCAGGTCGACCGGTAACGGCAGGGTCGCCACAGTGGCGCCTTTGCGGCGGGTCAGGGTGGCATCCAACTGTCCGTTGCTCGTCTCCCACACCCTTACGGCCAACGAGGCCCGGTTGGTGTGCACAGGGACTTTAGATGCTTCCTGTTCGACGATCATGCGAGTGAGGTT # Questionable array : NO Score: 4.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.42, 5:0, 6:0.25, 7:-0.84, 8:1, 9:0.17, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGGAGGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCTCCGCGCAGGCGGAGGTGGTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [29-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 73289-75091 **** Predicted by CRISPRDetect 2.4 *** >NZ_FNKS01000001.1 Streptomyces sp. KS_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================================== ================== 73289 28 69.0 126 ....G....CG..C....TC..C.-...T TCGTTGCGGCGGCGACGGCATCCGCTCCGTTCGGATTGTGCTTGTGCCAGCGGCGGTTCTGCTCAGTGGCATACGCCCGCCGGGCCTCGGCTTCGGCTTCCTCGGTTTGAAGGCGCTGCTGCGGTA 73443 28 89.7 32 C.............-..........A... CCGCGGGATGCCCGTCCGCCGAGCTGCATCTG C [73454] 73504 28 75.9 121 .C......TA..C..A....-.....T.. TTTCGGGCCAGGCAGTTGCCTGCGAGGGGCCGTGTGGCCCGGTAGATTCAGGCGGGTGCATGACCGGCGTTCCTTGAATCACGAATCGGCAAAACGCTCCTAACGGCGCAGGTCGCGAAGG 73653 29 100.0 32 ............................. GTCAGCATGGAGCCGAAGCGGACGTATTCGCC 73714 29 96.6 30 ............................C GGTCCTGGCCTCGCTGGCAGCGGCTGAGCG 73773 29 100.0 32 ............................. TAGACGAGGGCGCGCATGTACTGGCGGACCGC 73834 29 96.6 32 ............................T CTTCCCACTCGTCCCAGTCGGACGGCAGCGGC 73895 29 100.0 32 ............................. CTTCCCCGGAGAGCGCAGGGTCACCGAGCCGG 73956 29 100.0 32 ............................. GCGTAGTTCCGCTGTACCAGCGTGATTCCGGC 74017 29 96.6 32 .........T................... GGCCAGCGGTCCGGCCTGATCTCCGTGCTGCA 74078 29 100.0 32 ............................. ACGCTCGGCCTCGCGGTAGTGCTGGGGTCCCT 74139 28 89.7 33 ............C...........-...C GCCTGGGTGGAACAAGACCTGGGACCGCCCCGA 74200 29 93.1 32 ............C...........G.... CTGCTGGATCTGCCGGACCCGACGCGCGTGCA 74261 29 93.1 32 ............C...........G.... CTCAACTGCAGCATCAGCCTGGGCTCCGGCGG 74322 29 89.7 33 ............C.............T.A GGACCTGGTCGTACCGGCCCTCGACGTCGTCGA 74384 29 89.7 32 ............C.............T.A CGGGGGTGAGTGCCGTGGCGGACCGTACTGTG 74445 29 93.1 32 ............C...........G.... CTCAACGCTGTACGACCCGGGAGTGCCGAGGG 74506 29 96.6 32 ............C................ GAGACGCCGCGTGCGCACCTTCTGCCTGCTGA 74567 29 93.1 32 ............C...........G.... GCGGGCTGTCGTCTCGTACAGGCCGGCGACAG 74628 29 89.7 33 ............C............A..A GGCCACCCCCGAGATCGTCGCCTTCATGATGAG 74690 29 96.6 3 ............C................ GCC Deletion [74722] 74722 29 79.3 124 A..G...G.C................TT. ATCCTGGCCAGGTAGTGCCTGCGAGGAGCCGTGTGGCTCGGTAGATTCAGGCGGGTGCATGACCGGCGTTCCTTGAATCACGAATCGGCAAAACGCTCCTAACGGCGCAGGTCGCGACGGGTGC 74875 29 93.1 32 ....G.......................T GCGACCCACGCCACGCAGGTACACCGGAGCGG 74936 29 96.6 32 ....G........................ CCCGAGCTGCGGGTCGCCGGGGCGAGGCCGGC 74997 29 96.6 37 ....G........................ TTAGTGCATGCCGGGGGGCGGTGGCTGCTCCACCCCC 75063 29 96.6 0 ....G........................ | ========== ====== ====== ====== ============================= ============================================================================================================================== ================== 26 29 92.7 42 GTGCTCTCCGCGGAGGCGGAGGTGAGCCG # Left flank : CCCCTTCACCTCAACTCATCGTCCCAGTCCGGGGTTTACTCCACAGCCGATCCGCTGATTTGGCCCCAGGGCCGATGGCTATCAGCTCGGTGCCGAACGAGCCACGCTGGAGGCATACGCCAACCGGGCGAGGACGCTGCCGCAGGCGGCCGGGGCGACCAAGCCGCGCTCGGTCATCACCATGCCGATCGCCGTGCCGAGCCCAAGCGGTTCGCGGCCGTCCCGTCGAACGACCCTGCCGGTGCGCCGCTTCGGCTTCGCCGCGCGGGTAGCGCCGTTCTTCTTGTCGCCTCCCGGACGGCGACCAGGGCCTGGCGCGCAAGGTCGACCCCGCTCAGCTCGCCGGTCACGCGTGCACCGCCATGGCCGTGTCGCCGTCCAGCGGGCGTATAGCAAGGTCGGGCAGCCAGCCCCTCCACGGCACGGCCGCAGTCGTCTCGGTGCGGGCGGCGGCCTGCTCGCGCAGCTGCTCCAGGCGCTCGGCCAGCAGGTACTGCGCG # Right flank : GGATTCCGCCGCGAAGGCGAAGGTCCTGCGCAACTCCAGGCTGAGCGTCAACGCCTCGCCGGAACCGGTGAAGAAGGACAAGACGATCACCGTCGCAGGCGCCCTGACCCGCGCTGACTGGGAGACCTACAAGTACGGGGGCTACACCAAGCAGCCGGTGAAGCTCCAGTTCAAGACGAAGGGAACCAGCACCTACAAGACCCTCAAGACCATCACGACGGACAGCGAGGGCAACCTGAGGACGACGACGAAGGCCACGGCGGACGGCTGCTTCCGCTACTCCTTCGCAGGCACGTCCACCACTCCGGCGGTCGCCTCCACAGCGGACTACGTCGACGTGAAGTAACCCTCGGGAGGGCCATCCATCCTCCAGTAAGCGCAGAAAGCTCAGGCCGGAGACCTTTCGGTCTGGGCTTTCTTGAGCCCTGGCCGTTTCCCGGTCGGCGGGCCGGTCGGCCACTGCATCCCTTCGCACTCTTCAAGCTGATCGACGGTCTCGG # Questionable array : NO Score: 4.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:-1.04, 8:1, 9:0.26, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGGAGGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGGAGGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.80,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,1.05 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //