Array 1 237817-236397 **** Predicted by CRISPRDetect 2.4 *** >NZ_LRSP01000001.1 Bordetella pseudohinzii strain 228/11 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 237816 36 100.0 30 .................................... ATGTTTATCGTGATCACGATTTTGTCGTGG 237750 36 100.0 29 .................................... GCGGTGGTTCTGCGCCGATTAACATTAAT 237685 36 100.0 30 .................................... AGTGATCTTCTTCGTAACATAACGCGCTAC 237619 36 100.0 30 .................................... ACTAGCGTTGTAGTTATGTTGCGTGATTGC 237553 36 100.0 30 .................................... CGCATCGACGGACCGCAGATCAGATCATCG 237487 36 100.0 30 .................................... AAGTCGAAGTACAGCATGTTGAGGGACTAG 237421 36 100.0 29 .................................... GTATGCCGTATTCGATGCGCCCCCAGCAG 237356 36 100.0 30 .................................... TCTTTCACGTCCTTTCCTTGAGAGAGTCCA 237290 36 100.0 30 .................................... GGTCGTCACGCCTTCCCGACCGCCGCTGTC 237224 36 100.0 30 .................................... AGTGGCGTTTCAGCTGTCATTCCCGTACCT 237158 36 100.0 30 .................................... ATCAGTCGCATGAAGCTGCCGCCGTACTGA 237092 36 100.0 30 .................................... GGGTGAGGGCGTAGAGGGGAATGTTCATGG 237026 36 100.0 30 .................................... ACGTGTTACGACGCGATTTCGCTTCCAATA 236960 36 100.0 30 .................................... TGGAACAAGAAGTGATCGCACCGCCGGAAG 236894 36 100.0 30 .................................... TATTTGGATTGGTGCAAGTTCTATCTGGAA 236828 36 100.0 30 .................................... TTGCCCGTCATGGACGTGACGGCGCCGTCG 236762 36 100.0 30 .................................... ATCCATCCGAATTCACTACGGGCCAAGCTG 236696 36 100.0 30 .................................... ATAGCGATGCAGGGACGGCGCGCGTTGACT 236630 36 97.2 30 ......................A............. GGCCGCTCCAGTACCACTCGTGACGAAACT 236564 36 100.0 30 .................................... TCAGATGCACTGCTACATCCGCCAGTCCGA 236498 36 100.0 30 .................................... CCTACGCGGGTTCGACTCCCGCAGCCCGCT 236432 36 91.7 0 ..............................T.A..A | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 99.5 30 ATTCTAGATCACTGGGAATTGCGCTCTAGCCGGAAC # Left flank : CGTTGGCCCAGGTCTACCTGGGAGAACGAAAAGACCTCGAACTGCCTCTGCCCGGCCTGCCAATTTCTCTGGCCAATAGCCTGAACGGCGACTGATTTTCGACATGCTTTCGGGATATCGACTAATGTGGATGCTGGTGATGTTCGACCTGCCCGTCCTTGAAAAAGCCGAACGCAAAGCCGCCTCGGCTTTTCGCAATACCCTGCTGGATCTAGGGTTCGAGATGAGCCAGTTCAGTGTTTACCTGCGGTTCTGCACCAGCCAGGCCCAGCTTGACACTTTGTGCAAATCGGTCGAACAATGCCTTCCGGAAGGCGGCAAGGTCCACGTACTCCAATTCACGGATAAACAGTACGAGCGCACGATCACCTATCAAGGAAAATCGCGCCAACCCTCGAAAAAAGCCCCGGATCAGTTCGATCTTTTCTGACAATGAGCACTCTTTTTTTACTCAGAGAATTGAATAACCCCCTGATAAATCAGGGGGTTATGGGAACAAC # Right flank : AAATTGGCAGACTACCCCACACGGCAGAACGTGAACCTCTTAACGCTCCATTAATCCAAGTCCTGGATCCTTGATTGTCATTGTGAGCGCAGGCGGAGTGGATGGGGTTGGATTACCGGTGTTTGTCAGTGTTTCCGGGCGTGTGTCCGTCCTGGGCGGCAAGCCATGCATAGCGTCGGCCCATTTTCCGTCCAGGTGATCGCCGTGGCGCTTGCCGCCGTCCTGGCCTGGCTGGCCGCGCGGCTGCTGTGGCGCAAGGACGGCACGGGCAAGCGCGCCGCCGCCGTGCTGCTCGACGCCCTGCTCATCGGCCTGCTGGCCGCCCGTGCGCTCTATGTGCTGCGCTGGTGGCCGGATTACAGCGCCGCGCCGCGGGCCATCGTGTCCGTCGGCGATGGCGGTTTTTATTGGTGGGCCGGTCTGCCGGCCGGCCTGGCTTATCTGGCCTGGCGCACGCGCGGGCTGCCGCCGCTGCGGCAAGCCGCGCTGGGCAGCGCGGC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCTAGATCACTGGGAATTGCGCTCTAGCCGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA //