Array 1 14882-15942 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBQX01000119.1 Cylindrospermopsis raciborskii CS-508 CYLCS508_contig6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 14882 36 100.0 39 .................................... AACCGAAACAGTGTTAGTGGCAAGAGACTACCAAAAATT 14957 36 100.0 38 .................................... TCACGTGGATCCACGTGACACTAATCAAACCCAAAACA 15031 36 100.0 39 .................................... ACTCTTTCTGTAGAGTAGCCAAGCTCCACGAGGGCGGAG 15106 36 100.0 36 .................................... AGCCCGAAACGGGCTTACTGGAACTATTAAGTTAAC 15178 36 100.0 34 .................................... CCCGCTAAAAATAACCCGTGGTCTTGGAGCGATC 15248 36 100.0 35 .................................... AGCTAAGGACATAAATAAGCTGCGCGCTAAGTCAG 15319 36 100.0 41 .................................... CTACTAGTATAGACGATTTTGTTAATAATGTAACTTCTGCT 15396 36 100.0 40 .................................... CCCTATTGCCGGGTATACGCAACTCCTTGGCGTATAGGGA 15472 36 100.0 35 .................................... CCTTTTCTATTGATTGCTGCAAGGGTCTGTTAAAA 15543 36 100.0 36 .................................... TTTATAGCCGAATAGTAGCTATGCTCTTCGGCGTTG 15615 36 100.0 36 .................................... CTATTAGAGAACGCTTAGACGAAGTCTACCCGGAAT 15687 36 100.0 34 .................................... GGTAATTCCCACCCGAAGGCTTGATGCACTTCAA 15757 36 100.0 39 .................................... AAGAATAAACGTCGACGTATTCAGTTGAGTTGAAGAAGT 15832 36 100.0 39 .................................... CTTGACAATAAATATTAGCGGTGTTACCCTAATAATGCC 15907 36 83.3 0 .........C......T........A.....T.C.A | ========== ====== ====== ====== ==================================== ========================================= ================== 15 36 98.9 37 GTCTTGACCTTCATAAGAAGGAATAGGTATTACGAC # Left flank : CTATCTATGGGAATAGTTACATCTATCTTTAGATAGATATTTGGGTAAGATAGGGATTTGGGTAGGTATTTTACGACATTTTATCTAACCTAAAAACTTTTATGCGAGTAATGAAATATCCCAGTCAATGTAGTACCTAATGGGGGGTGAGAATGAAGTGGTCTCAAAAAAATAAAATATACATAAGTTTTAGGGAATTATTTTCCTGTAAATGTGTTATAATAGTGGCACAAATGGGGAAAAATCGGTATAAATATTTCAGTAATAGTAAGGGATAATGATAAAAATAAAGACAGAAAAATCAGTAATTAACGAAGAAAGTGCGAAGGTCAAGAAAAAACGCTGGAATGCCTATTATTTCGTTGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGAGGGTAGTAGGGGTGAAAAACAGAGAAATTTTGCTGACCTTCGCAAAGTGGGTCTTGACACCAGTCAGGGTAAGGGGTTAAAATGGAGGG # Right flank : ACTAAATAATGAGTGCTTGAGAAAATATCGAACTTATTAGCTGTGCAACATGAAAAAACTACAAAATCTTCTTTTCTCCTTCCTCATCTTCACTTTAGTATTTTTAGGAATTACAGCTTTTTTTATTCCTAACATTGCTTATGCACAAACCACCTCAAAAACGATTTTAAAAGTTGCCCTTTTTCCCTATATTCCTGATTCCGCAGAGGATCAATATCAAACATTATTAAACAGAATTGAAAGTGAGTTTGAAACCCAAAATCCCAACATTGACTTAGTATTAAAACCTCTCAACCCAGAAGAAGAAGGATTTTATGACATAGACACTTTAAAACAATGGTTAACCAACCCTAGCAAACAAGATGGTTATGATCTCGTTGAAGTAGATACATTATTATTAGGTGATTTAGTCAAAGCAAATGTAGTCAAAACATGGAATAAACCTGAAAATATCAAAGATTGGTATCCTGCAGGTTTACAAGGAGTCACAGTCAATGGTG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGACCTTCATAAGAAGGAATAGGTATTACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.70,-5.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 9149-11092 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBQX01000121.1 Cylindrospermopsis raciborskii CS-508 CYLCS508_contig61, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 9149 36 100.0 35 .................................... TTTTAAACAACAAATATGGCTGGATTCATTATGAT 9220 36 100.0 40 .................................... TTGACAAACTATTCCCAGAACTTAACGAAAAACCAGAATT 9296 36 100.0 33 .................................... AGCCTTGGCTATCGCCCGCCCTGGGGCTACGCC 9365 36 100.0 37 .................................... AGCGGCAAAGCCGAGGAGACCAGTAAAAAAGCTATTA 9438 36 100.0 39 .................................... TATCTGGAATTCAGACCTCTATTTAGTAGAGGGAATGAA 9513 36 100.0 40 .................................... AATAGCGGGTGGACTGATCCCCTCTACCAACTAGAATTTC 9589 36 100.0 39 .................................... CCAGAATTTAAAAGATCTGTGGTCTTTATTAGATGACGG 9664 36 100.0 36 .................................... AGGTAATAACTAGCGGCTGTAGGGTGTACGAGGGGG 9736 36 100.0 35 .................................... TCCCATCTACTCCTGCCGAATGGAGGCAGTGTCTG 9807 36 100.0 38 .................................... GAGTTCTACTTAGGTAGAATGGTTGCAAAACAAGCATT 9881 36 100.0 39 .................................... TATTATCTGTCCATTGGCATTACTATCTAATACTTGGAA 9956 36 100.0 41 .................................... CCGCTCGTTTTCTAGTTCTATCTCTTGTTTTCTAAATCCTA 10033 36 100.0 35 .................................... TCTTTTGAGGATTTTATCTTGTGCCACTCTGTAAC 10104 36 100.0 36 .................................... TGGAGCTGGATACAGCTCTGAAAAACAATAACTCGT 10176 36 100.0 43 .................................... ATCTTGAATTTAAAGATACTGATAACTATAGCACTGATACAGA 10255 36 100.0 33 .................................... GGGGACTAATTTCACGAATCAACAAATCCAAGA 10324 36 100.0 38 .................................... ATATATTCAGGCAGAGCTTCAATTCTTATTGCTCTTTC 10398 36 100.0 38 .................................... ACAACGGTAACCGCGCGGCTACCATTAAAAAAGCGAAC 10472 36 100.0 36 .................................... GTTTATGATGTCTGAAAAGGCTGAGATAGTATCCGG 10544 36 100.0 37 .................................... TTGTTTTCTCCAATTTCTGTACAATACTTCTCCTATT 10617 36 100.0 37 .................................... CTACAATTTTGTTTGGTTTATGGATTATTCTTATGCA 10690 36 100.0 35 .................................... ATTAAACGGTATGCATTTGAAAGAAAACCTCGATG 10761 36 100.0 34 .................................... GGAATCCAGAGCGCCGTTACAATCCCAGTATTCA 10831 36 100.0 39 .................................... TGACACCAGAAACTTGACGTGGTATATTGATAATGGGAA 10906 36 100.0 40 .................................... TACATCATCATTAAAGCTCGGTAAAGACGTGATCCATACC 10982 36 100.0 39 .................................... ATTCTTGAGAAATAAGCCCGAAAATCTTTTACAGTCACT 11057 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 27 36 100.0 37 GTTTCCATTGATTCCACTTCCCAGAGGGAAGCGGGG # Left flank : GATGACTACCTGTAATCCTTTTTAGATTCCATCCATAGCGTTCAACAATCTTACACAGAGACTTACCAGAAACGGATTTCATAAAGATAACTCAATTAACTGTTTTTGTGGTTCAACTTCTTCTTGCTGACTAGCAACTTCTAACCAACCTTGAACAGCATCTTTCAACATTTCTAATAAATGTTCGTAACTTTCACCCCAGGTATGACATCCTGGTAAAGCTGGTACAGAACCACACCATACACCGTCTTCTTCCCAAATAATTGCTTTTATTTTCATAGCCAATTCCTTGAACTAAGGATATTTTAGCGCAGAAGGAGTCAGACGTACCAGTTTAATAAAAATGAATAATCGCTGTTTGGGGAGTTGAGGAGGTGCGATCTTATAGCTTATTGTAGGCGATCGCTCTCATATTTTAAATTTCTCCCCATTCCCTAGCATCAATAAAAATAGAAAGATGCTTTTTATTGCTCGTGGCAATAATTACCTAAAGACAATGC # Right flank : GACCTCCATTTTAAGCCCTTACCCTGACTGGTGTCTAGACCCACTTTGCGAAGGTCAGCAAATTTTCTCTGTTTTTCACCCCTACCACCCTCAAAATAATGGCTGAAACCCTTACACCACAAGGCTGCGAGGTTCCCGACGAAATAATAGGCATTCCAGCGTTTTTTCCTGACCTTCGCATTCCCTTCGTTAATCACTGAATTTACTGTCTTTAATATCACTTTAACCATTAATCAATAATCTCAATACTAATCCTTAATTAATCCTTCCATTTATCCTATTATAACTGATTCATGCTCAAATAACTGGTATTCAAAAACAAAAAATTTATTGTATATTTTATTTTTGCTTAGACTAAAGTAAACAGATATCATATAGCTTAAAACTTTACCTAACATGAATACTCAGATAATAATAGAATTGGGTAATTGCACTATGGGTACTCCCACTCCCCAAGCTTCTATTTGAGGAATGGTATGTTTAGACAAAGGATAAAATCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTGATTCCACTTCCCAGAGGGAAGCGGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 167-863 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBQX01000026.1 Cylindrospermopsis raciborskii CS-508 CYLCS508_contig121, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 167 36 100.0 37 .................................... TCGAACCAAGTCGAGTGTAGGCGTGGGCATCGCGGTT 240 36 100.0 38 .................................... CAGCCTGTAACTAAGCCCGCAGCTACTGTAACCGCGCA 314 36 100.0 35 .................................... ATGGAAACAATAGAACCGACGGAAACGAAATCAGG 385 36 100.0 38 .................................... AACAACCCGGAAACAACCCGGGTAGAACGGGTAGACCG 459 36 100.0 40 .................................... AAGAGCAAACCAAAGCACGTAGTCTAGTTCGATCCAACAT 535 36 100.0 38 .................................... TAGCGGGGACTTTAAAAGCATTTGGGGACTTTAAGAGA 609 36 100.0 39 .................................... ATTAGTTCTTCAGTAGAATACATTATGAGTAAGTTTAAA 684 36 100.0 35 .................................... ACTAAGCCCTCTTCCGAGGACTCAAAGGGCAATGG 755 36 100.0 37 .................................... ATCTTTTTAGATATCTGAATTGTTGTTTCTGATGAAA 828 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== ======================================== ================== 10 36 99.7 38 GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAC # Left flank : AAAAAACGCTGGAATGCCTATTATTTCGTCGGGAACCTCGCAGCCTTGTGGTGTAAGGGTTTCAGCCATTATTTTGATGGTGCGGGAGGTGAAAAACAGAGAAATTTTGCTGACCTTCGCAAAGTGGGTCTAGACACCAGTCAGGGTAAGGGGTTAAAATGGAGGGG # Right flank : TTGAGTATATTTAGTGTAGATAAGTAAATTCGCAAACTTTAACGTTCATAAGAGAAAGAAGTGTTAAGACAAATAAAAAAGAGGGAGGATAATCTTCCCTCTTTCATTTAAGTATCTATAGATAAAGACTACTACAATCATTAGGGCGGGCATGTAGATATTTA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.50,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 869-679 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBQX01000027.1 Cylindrospermopsis raciborskii CS-508 CYLCS508_contig122, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 868 36 100.0 38 .................................... AATTGGTTGACAACCAAAAAAAGGTGTGTTATGGTAGT 794 36 100.0 44 .................................... TGGAAACCCCCCAGCCACAAACACATCCGCATTAGACTTAAATA 714 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 3 36 100.0 42 GTCTTGACCTTCGTAAGAAGGAATAGGTATTGCGAC # Left flank : TTTAAAGTGTGATATTTCTTGTAATGGCATATTTATGAGCATAAAAGTGGAATTAAACATGAACGTAGGTTGGGTTGAGGAACGAAACCCAACGCCCCCATGGGTTACCCTACCCCTAACCCATCCTATTTCACGGGGCGATCTCGCCAGTGCGAGTGCTTCGCAATCGCTTGATTACTTGATTTTCCATTATATGGTGTCCAATAAGACCTGCCCACCAGTTATCGAGTTCGGAGGGGGGTATACCCCAGGTGCCATTTCTTAGGAATTGGGTGGGTTCTGGTTCCATGAATACCAATTGTTTTAGATCCCCCTTTGGTTATTTGTTTTGTAATGATAGGTTAGGGTTCTGGTTAAATATAATATTAACCTGGTAATAAAAACTTTGTCTTCTGTCTATAGGAATAGTTACATCTATCTTTAGACAGAAAAATCAGTAATTAACGAAGAAAGTGCGAAGGTCAACAAAAAACGGTTGGCACTTCTTCTGCTGTACGTAA # Right flank : GTAATAAGGTTGTTTCCAACAACTTTATTGCGTGATTTTGTTTACCTCGACGTTTGCCATTCTTTCTGATTTTGGAAGACCCGCAGTTTGGACAATGCACAGTAGATTACCTCAATTCATACCTCTATTATGCAACGCCAAAAATCGCTTCTGTTTCGGGAATTTTCTTGATAGGCTTGGTTTTCAGAACTCATTTTAAGGAATTAAAAAAGGCAAAACTATTGAGTTATTAGAGGAAGTTGATTTTCCTGATAATGAAGAGGTATTAGTGGAAATTAGAGAGGTTAATGATTTTTGGTCAGCCTTGCAAGATTTTAAACAAAGAGTAGATTTGGCAAGTCTTGATGATGATACTTTTGATAATTTACGGGACAAGTCAACGGGGAGAGATGTTCTTTTATGACTCTCAAGTATTTACTAGATACTAATATTTTGTCAGAGGCTAAACGACTTCACCCGAATGAGAAGGTTGTCTAAAGTCGGTAAGAGTCCTGCTTTTG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGACCTTCGTAAGAAGGAATAGGTATTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.20,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 250-1625 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBQX01000004.1 Cylindrospermopsis raciborskii CS-508 CYLCS508_contig101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 250 36 100.0 40 .................................... TTCCAGATGCAATGGAGTTATAGCTCCCACATATTGGAGA 326 36 100.0 38 .................................... CACTCTTAGGAGCGTTCTAGCTTTATCTGTAGCGGAAA 400 36 100.0 42 .................................... CGCACTCCCCTTCGCGACCCCTCTTCTTCTTCTGGCTTCTTT 478 36 100.0 39 .................................... AAAAAAGGTGATCAAATTTTAATCAATGGGAGATTAGAA 553 36 100.0 37 .................................... TCATTCAATTGAGCGCGTGGGAAACCAAGCTTCTTCA 626 36 100.0 39 .................................... CCTTAAAGGCATCTAACAGGTTGCAGTATGCTTCTATCC 701 36 100.0 41 .................................... ATTATATAGTCCTCCCTTACGATAAAACAGTCAACTTTTAC 778 36 100.0 37 .................................... TTCTCCCTGTCAACCGATTGGGGAAAATATTTTAGAA 851 36 100.0 37 .................................... GATTATTGTGTACTAGTTTCTGTGCTAGCACTTGTTT 924 36 100.0 41 .................................... TAATACGTAAAACCTTGAAGCCGTGAGCCCTGAGCAGGGAT 1001 36 100.0 38 .................................... TCCATTTATTTTCTCCCAGTCGGGGTAATAGTCCTCAT 1075 36 100.0 35 .................................... AACCTATTTGGATGTCGTCTATATGAGGTGGTTGG 1146 36 100.0 38 .................................... CAACACCTGAGACAACACCTGATCCACTTCACCATGAG 1220 36 100.0 38 .................................... GCGACTGGCGGGAGGTCGTATTCACCACGGTGTTAGAG 1294 36 100.0 40 .................................... GTAAGTTGCTCTTTGTCTTGAACTTGTTTCCTACTGTTAG 1370 36 100.0 34 .................................... AAAGAGGTTTATTACAAGTTTGTTATTGACTTCC 1440 36 100.0 39 .................................... CTGTTGATTTCGCAGACGCAGAGTTTCCAGTGGTGGACT 1515 36 100.0 39 .................................... GACTCAAGCATGAAGGTGTAAACAACCGGTTCCTCAATA 1590 36 80.6 0 ..G.....A............A........A..GCT | ========== ====== ====== ====== ==================================== ========================================== ================== 19 36 99.0 38 GCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAAC # Left flank : CGGATTCAACAACATCAGGACAATTACCCACGTCAGAGTGATTTTAGCTTTGCTGTTTACGGACAATTATGGATTTATGGCATGGAACTATGGGCTGATTTAGCTCTAAGCTTAATTAGTCTTAAACCTAATAAACGCCTCTTTTTCAAGCGTGGCTTTCAGGCTCTATCCCTTATGAAACAAGCTGTTTGACCACTTTGTCACCCGGTAAGCTAGACACCAGTCAGGGCAAGGGCTTAAAATGGAGGGG # Right flank : GTTGGGTTTCGTTCCTCAACCCAACCTACATTCCAAATTTAGCTTTGCCGACTAAATGGCATTTCCAGTCCATCTATTAGAGCGGTTGGGAAATAAAAGCATATTTCCGGATGACAGAACTTCCCCCATCCCGATTGAATTTATGCTGCATCTAAATAGAA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCGCTTCCCTCTGGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 191289-191624 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBQX01000047.1 Cylindrospermopsis raciborskii CS-508 CYLCS508_contig140, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 191289 37 100.0 38 ..................................... TGGTTGCACTAAACCATGAGCTTCTCCTACGTTTTCGT 191364 37 100.0 37 ..................................... TTGTTGGCTCTCTCCCATGAATTTGTTTGAATAGTTT 191438 37 100.0 39 ..................................... CACATCTAGAGGACAAGCTAGGCGTGCTGGAGTCGCAGC 191514 37 100.0 37 ..................................... TTGACAAACTTAAAATAGAGAGATATAGTAAAAACAC 191588 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 5 37 100.0 38 GTTCAAATTTAGACTTATCTCCATAGGAGATTGAAAC # Left flank : GTTTAGAATCATCAAGCTATAACGAACCAATCAAAAAATCTGAACGTTGGATGAATGGAATGCTTAACTGGTCTGATTTGGTTACTAAACCTCAGCTCTTTGATTTAATTGCTTCAGCCTTACCCACTCGTTTATTAGAGAATGGTAAGTATTTGGTCTCTACTCGTCTATTAGAGGTTAAATTTGCTGATGATGAGGTGATTTATTTACCGAGTGATATGAATTACTTGGCTGCTCTGTAGAGGGATTTCTGCGAGTTGTCTGGGTTCTGGAGTTCATCTTTTAGGCTAATCATCTCTGAAGCTTTTGATTTGATTAGCTTTTTCTACTCCCGGTACTGGTTTCTTGTCTCGCATTTTTTAAAGGCTTGCTGTATGGTAGTTTGACTCTTTCTTCCCTGTACTTTCGTTCTACTTTTTTATGGTATATTCTATGTTAGCTCAATTCGTCTCGCAATATGTCTCTCTAGGCTACCTGCTGCAATGGGTTGGGCGATCGCC # Right flank : CCTGATGACATTAGAGAAGGTAAGAAAAAAATATTATGAGAAATAGAAGTGTATCTGACATGCCTCTTAGAGAGGGCGATACAGAAATACAGACGGTAGGCTGTAGGCATACTAATCCTGATATTTGTGCAAAGAATGGTTTACATGGAAAGTGCGCTTTACCAATAAAGATAACATTTGCTTTACTCCGCCAGCGTCATGGAAGAAAAAATACATAAATCTTAAAAACGAAGGATTGAAATGAAAATCATTAGCGTAGCGGCTATTCAAAAAAGAGAATATTGGATAGAAGAAATAAGAAAATTAAGCGGTAATTTCGGTGATGATTCAGAAAGATTGGAAAAAGAACTTTCTTATGAAATACAAAATGAAGGACTAGAAACATTATTAAATCACTTGAGACTTAGTGGCGATATACCAGAATCATATGGTCATGATACAAGCGAAGAAAAACAGTATTCTAAATATACTGACGCTCTTCTTTCTGAGTTATATAAGGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAATTTAGACTTATCTCCATAGGAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.90,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 1 1352-1608 **** Predicted by CRISPRDetect 2.4 *** >NZ_MBQX01000054.1 Cylindrospermopsis raciborskii CS-508 CYLCS508_contig147, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 1352 37 100.0 36 ..................................... CACTGCTGAGGTTGATAGAATAAACGAAGCATTAGG 1425 37 100.0 36 ..................................... CCTTTGGAAGAGGTGTTTTGTAGGGGTCAAAATAAC 1498 37 100.0 37 ..................................... GCCATTGTCTAAAATCTTGTGACTTAATCTTATGATT 1572 37 94.6 0 ..........................T........A. | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 98.7 37 GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGACT # Left flank : TTTACAGCACTTCCCCCCTGATAAAAGATTGACGGAAAACGTTTTCCGTCAGTGCATAAAGCCATTATTTCAAGGATTTTGGCGTATAATGTTTGACTAAATGTAGTTATGCAATTTGGTATTGTGTTTTATCATATTAAATCATAGCTATACATTTTTATCCAGACAATGAAATATACTTTTAAAGTTTTGCACCCGGTAACTTACAGTAGGGTATTTACAATAAAAATAAAATATACATAATTTTTAGGGAATTATTTTGCTGTAAATGTGTTATAATACGGGGGAATATAGGGGAAAATTGATATAAATATTTAAGTAATAAGAAAGAATAATGATAAAAATAAAGACAAAAAAACAGTAATTAACGAAGAGATTGCGAAGGTCAAGAAAAAACGCTGGAATGCCTATTATTTCGTTGGGAACCTCGCAGCCTTGTGGTGTAAAGGAATAGGTATTGCGACCATTCATTAGATGACGGTACATCCATTGAATCTACT # Right flank : TGAGTATATCTAGTGTAGATAAGTAAATTCGCAAACTTTAACTTTCATAAGAGAACTAAGTGTTAAGACAAATAAAAAAGAGGGAAGATAATCTTCCCTCTTTCATTTAAGTATCTATAGATAAAGACTACTACAATCATTAGGGCGGGCATGTAGATATTTA # Questionable array : NO Score: 2.80 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGACCTTCGCAAGAAGGAATAGGTATTGCGACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.50,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //