Array 1 1-1590 **** Predicted by CRISPRDetect 2.4 *** >NZ_WGGN01000075.1 Yersinia pseudotuberculosis strain 19-YE00068 NODE_75, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1 28 100.0 32 ............................ GATTTAGAAGCTACCGTGTTAGCTAATCACGC 61 28 100.0 32 ............................ ATGCCAGTTATTATAGTCTACCCTGTTACATT 121 28 100.0 32 ............................ CAGCAAATTCAATCGAACGATGGAGTGCGGCA 181 28 100.0 32 ............................ ACTGTGAAAGATGTTCTAATATAGATTGCGAT 241 28 100.0 33 ............................ AAGTACCACCAATAGACTCCCAATACTCACCTA 302 28 100.0 32 ............................ TCTTTAAATGTGAAACCACGAACAAATAAAGT 362 28 100.0 32 ............................ TTAAGTACCTAGGCATTAAAGTAATTAATTCA 422 28 100.0 32 ............................ TCGGAATACAGATTATTGCTGGTACTGTCAAC 482 28 100.0 32 ............................ GTGTAGACGCTTATGCTCAGGTTCTATTAACA 542 28 100.0 32 ............................ ATATCTCATGCCAACACGTTGGATGAATCACA 602 28 100.0 32 ............................ ATATAGCGAGTTTAAAAAGAGTTTACCTAACG 662 28 100.0 32 ............................ ATAAGATAAATTATTGCTATATCTATCTGAGC 722 28 100.0 32 ............................ CCAAGCAATATTAATAATATACATAACTCCGG 782 28 100.0 32 ............................ GATTTAGAAGCTACCGTGTTAGCTAATCACGC 842 28 100.0 32 ............................ AACAACAAATAAATGTTTATCTATATGATAAT 902 28 100.0 32 ............................ CTTATTCCCCCATTTACCCAAATCTGAATCGT 962 28 100.0 32 ............................ GCATTCAAACGAGTATCGTGGCGGCAACACAA 1022 28 100.0 32 ............................ CATCTTTGAAAGATTCATTGAGTGATACAAAA 1082 28 100.0 32 ............................ TCAATGGTAAGTCCGAAGATAGCATGGGAAGA 1142 28 100.0 33 ............................ CCTGCCCACCCATCACTCCGGCGCTACAGGCCA 1203 28 100.0 32 ............................ TGCAATTCCGGATCATATTGCTGCGTTGATAT 1263 28 100.0 32 ............................ TAATGCCTTAAACGGATTGCCGGATAAAAAGG 1323 28 100.0 32 ............................ AACATTATCGATGGCAAGTTTTCTCGCTCATC 1383 28 100.0 32 ............................ ACTATTCACAGCCGCCAAGCCAGCGGAGGATT 1443 28 100.0 32 ............................ AAAGAATACACCCGGAACGCCATCTGGTGATT 1503 28 100.0 32 ............................ GTCAACGCTTCACTCCCTGCGCGGGGTATAAC 1563 27 89.3 0 .....................CC.-... | T [1589] ========== ====== ====== ====== ============================ ================================= ================== 27 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : | # Right flank : ATCTCAGCTCTCTGGCGGCGCTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGCTCAGGGCTAAGCGCTTCACGGCGATGCTGTAACCAACGCTGTTGTTCACTGTTATTCAAGGTATTTGGGTAGTTACGGGCGCGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCTGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGGTCAGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGTAACCGCGAATGGCTCAGCTTGTGCAAACAGCGCGACCACTTTTTCACGCACCTGCGGGTTTTGCCGCAGCAGTTGCAGATTTTGCAAACAACGCTGGCGATCAATCCCCAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 75665-78274 **** Predicted by CRISPRDetect 2.4 *** >NZ_WGGN01000002.1 Yersinia pseudotuberculosis strain 19-YE00068 NODE_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 75665 28 100.0 32 ............................ ATTTCCAGACATTGGGATAAAATAACATTTCT 75725 28 100.0 32 ............................ ATCATATGACTTAAACTTAGCCATAGCTGCAT 75785 28 100.0 32 ............................ AATGGGATCACCTTGCTATATTGCCGCCAAGC 75845 28 100.0 32 ............................ AATTGAACGCGCTAATGCTTATCTTAGACTGA 75905 28 100.0 32 ............................ ATATCAGACGGCGCTAAAACTTGAGTTTTAAA 75965 28 100.0 32 ............................ CATATCGCGCATGTGTTTACGCAATTTATCAG 76025 28 100.0 32 ............................ ACTCGTCATCAAAACTGCAAACAGTACGATTA 76085 28 100.0 32 ............................ AAATAGACAACTACGCAGCAGTGCTAGACCGC 76145 28 100.0 32 ............................ AAGTCCGCCATTGCTAAAGGCTGAACCAATAA 76205 28 100.0 32 ............................ TTATCAGGGTGAGGATAGACACGACCCCAAAA 76265 28 100.0 32 ............................ ACTTTAAAGTCGAGAATGTTTTCCCTGCTCCT 76325 28 100.0 32 ............................ ACTGAATTACGTCAATTCTAACAACAAGAAAT 76385 28 100.0 32 ............................ TATTTAACCTTAACCTACGCGAAGTTTAGTTT 76445 28 100.0 32 ............................ ATTGTGTTGAATAGAAAAATGGTTTCCATCTC 76505 28 100.0 32 ............................ AAGTACCACCAATAGACTCCCAATACTCACCT 76565 28 100.0 32 ............................ AAAGCAGCGCAAGTTAATAGCGATGAAGTTAA 76625 28 100.0 32 ............................ AACAACAAATAAATGTTTATCTATATGATAAT 76685 28 100.0 32 ............................ ATAAGTATAACACTATAATTAATAATTGATGT 76745 28 100.0 32 ............................ GTCATGATAAACTTGGATATTTCTATAAATAT 76805 28 100.0 32 ............................ TTTACCATATGAAAAACGTTTTACAAGTGAAA 76865 28 100.0 32 ............................ CAAGTTTTAATAGAGTGGAGGAATACATTCAT 76925 28 100.0 32 ............................ GTGTAGACGCTTATGCTCAGGTTTTACTAACA 76985 28 100.0 33 ............................ CCATGTCAGTAATACCTTTTAAGTTATCAATAC 77046 28 100.0 33 ............................ CTTATTTTAACACGTCACATAATGCACAGGATT 77107 28 100.0 32 ............................ TTATAGTTAATTTAAATTGAGTTTTATTATAT 77167 28 100.0 32 ............................ TGTCCAAATTTAGGAATATAGAGAATGTTTTT 77227 28 100.0 32 ............................ ATTTAAAACGTGAGCAATAGATATGCATAACC 77287 28 100.0 32 ............................ AATGCGTCTATTCTTGAATATCTAAATACATC 77347 28 100.0 32 ............................ TAACGCTTTAATAACACTATCATCGTTAGATT 77407 28 100.0 32 ............................ TAATATATCAATTTCAGAGTGTCGAGTACAGA 77467 28 100.0 32 ............................ AGTTGCAGCGAATACTTGACCAGATGTTGCTA 77527 28 100.0 32 ............................ CCGCCGCACACCCCGCACATCGGCGATCCGTT 77587 28 100.0 32 ............................ AATAGCCTGAAAGCGCTTTGCTATAGCACCCA 77647 28 100.0 32 ............................ AGCTGCTCAACTTGGTTGATTTCGCAGCGCAG 77707 28 100.0 32 ............................ AAGCAATATATGCGTCCGGACATCAAAGCATG 77767 28 100.0 32 ............................ CAGATGGCATGAAATTAAAGGCTCATGATACA 77827 28 100.0 32 ............................ TTTAGATGCCCGATCTAATTCCTCTTGGGCTT 77887 28 100.0 32 ............................ AGTACCACCAATAGACTCCCAATATTCACCTA 77947 28 100.0 32 ............................ ACCCAACCTCAAAGCTGGATGACAAGCGCAAA 78007 28 100.0 32 ............................ TCGCGAACGCGCTCAGGTTCACGGAATGGCGA 78067 28 100.0 32 ............................ ATCTGCGCCAAAGAAAATGCCATTCAGATAAT 78127 28 96.4 32 .........T.................. AACTACTAGAAGCTTGCCCATCTTACCTTTTC 78187 28 100.0 32 ............................ ATCATGAAAGACATTGTTCGCCAGTCCCCTGA 78247 27 85.7 0 ...................-A.A.C... | T [78271] ========== ====== ====== ====== ============================ ================================= ================== 44 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGCTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCATCACAGAAATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATCGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTATAAAGCATCAATCTGACTAAAAGGCCTTAGCCTAAAGGCTATGGGCGCAGGGGGGGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGATTGTTGCCCAGCGAGGGGGGAGACATATTTATAGGCTGTGGTTTATGACATGGTTTGTGGAATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAAGTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : ATCCTGGGCCATGTGCTGATGCTATTTGGGGAGCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTGTGAGTATTAGAGTAGGGTAAATAGCAGGTGGCATATCAATATATACCCGTCATACTTCAAATTGCATGTATGTTGGCTGCGCTCAATTATCCCAGTCACTTACTGGTGTAAGCGCTTGGGGATTGACTCAACTACTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTCTGGAATAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCGCTAAGGAGTTTTTTGGCTATGGAAAACGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGTGTATTGGTTAATGGTGGGCGAGTTGAATATGTCACCGATGAAGGTAAACAATCCCT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 15899-17188 **** Predicted by CRISPRDetect 2.4 *** >NZ_WGGN01000063.1 Yersinia pseudotuberculosis strain 19-YE00068 NODE_63, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 15899 28 100.0 32 ............................ TTTCTATAACTTGTGCATGCATCCATCTATCA 15959 28 100.0 32 ............................ ATAATAGATGCAGAGCTACCGACAGCGGGCCA 16019 28 100.0 33 ............................ GTGAATATCGAGCGTCAGGGTAACGCTACTCGC 16080 28 100.0 32 ............................ GAGAAGATTAGTCTCCACTCTATCAACTTGAT 16140 28 100.0 32 ............................ AACACCAAGGGATTATTACCAGACACAGGCGA 16200 28 100.0 32 ............................ ATATTAAACCACACGATTCAACTACAAAAATG 16260 28 100.0 32 ............................ ACCTCGTTCACCTGAGCGTTTGACTTCAATAT 16320 28 100.0 32 ............................ ATATCAATTTCAAAGTGTTGAATATAGAGAAA 16380 28 100.0 32 ............................ TAAAACGTTTCTAGAAGCCCAAGAAGCGCCAG 16440 28 100.0 34 ............................ GTTGGCCTGCTGTAGGTTCGTCTGCGTCTGTTAT 16502 28 100.0 32 ............................ TATTACATATAATTTCTCTATACTCTTTATAC 16562 28 100.0 32 ............................ TGAGACAATCATCCTATTTTCCCTATCCAGAA 16622 28 100.0 32 ............................ ATACTACATTTATTTCCATATTAAACCACACG 16682 28 100.0 31 ............................ CCCATTAATAGAGGTATAAAAGGAATCATAT 16741 28 100.0 32 ............................ AACAACTCTAACACGTAGATAGTCTAAAGTTT 16801 28 100.0 32 ............................ ATATCAGACGGCGCTAAAACTTGAGTTTTAAA 16861 28 100.0 32 ............................ ACATACTGCTTAACTTGGTTCCATAGACCGTT 16921 28 100.0 32 ............................ CTTGATTAAAAGCTTCTTCTTCTTTAATAGCA 16981 28 100.0 32 ............................ CTACTCCGAAACTACGGAGTGTGATTACATTT 17041 28 100.0 32 ............................ TGAGACAATCATCCTATTTTCCCTATCCAGAA 17101 28 100.0 32 ............................ AGACACAGGCGAAACCACATTCTATATGAATC 17161 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 22 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GTTATAAGGCAAGCTCACGCTCATCATTAAGTTTATCAATCCGGCACAGTCTCTGTTGCCGGATTTTTTGTATTCAGAAAACCAGGCCAGAGCGTATTGTCGTGCGGCTACAATCTCAATCGTGATTAGGCTAGAAAAATGAATCGAGGTGATGAACTCCAGCAGGCAGACCCTCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCCTAATTCGCAATAGACGATACCGAGTAACCGTACCCATTAGCCATAGTATTACTTTTTTAGTTATTTAATTTGGCAGGCCAGAAACATGGGCCACCCCACCCCCCCTCCTCAGAAGAGTAATCATTAGGGTTACGTCCCCCCCGATTCTTGTGACCCTCTTTTTATCACTATGACTAACGTATTGATTTTTATGCTACTCAGGTATTTCACTAAAAAAAAGGTTTTTACGCATTTTGCGCCATTGCTCATTGATAAACATCGGGTTATCCGTATTATCTTACT # Right flank : GATTTAGAAGCTACCGTGTTAGCTAATCACGCGTTCACTGCCGCACAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //