Array 1 11626-10817 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYMX01000031.1 Photobacterium phosphoreum strain FS-2.1 CFSAN065481_31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 11625 28 100.0 33 ............................ ATTAACGCATGGTGTGCATGCTGAGGTATTAAA 11564 28 100.0 32 ............................ GCACATGATAATGCTGATCATTAAATAAAATT 11504 28 100.0 32 ............................ TTTGTTATTACTGGCAATAATGCCAACCTATT 11444 28 100.0 32 ............................ CGGTGCCGCCACTAATGTTGGCTTTTCTGCAC 11384 28 100.0 32 ............................ TTATTACTGATTACTAGTGAACCTAATGTTTT 11324 28 100.0 32 ............................ TGTAATTTTCGGACAGGGACGGAAGTTTTTAG 11264 28 100.0 32 ............................ AAATGGCGGAGGGCTGGACGCGCGAACGATCC 11204 28 100.0 32 ............................ CTTGAGTAATCAAGTTCAATGGCGACCACGAG 11144 28 100.0 32 ............................ TCACTATTTGCAATGCCAGTTACAGACAGTGA 11084 28 100.0 32 ............................ CAGAAGATTTAGAAGCAATGCTAAACGACACG 11024 28 100.0 32 ............................ TGTTGAGCGTCCTGAATGTGTCGAACAACCTT 10964 28 100.0 32 ............................ AGCAACACAAGCGGAATCAGCAGCTATCATAG 10904 28 100.0 32 ............................ GGTGAAATTGAACGTGAGTTTATACGTCAACG 10844 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 14 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ACACCCGTGTTATGGTTATTACGTCAATTCCGAGTGACATCAAAGGTTATCAAACCGTCAAGCGTGTGCAGACCAAAAGTGCCAATAATAAGCGTAAGCGTTCAATTGCTAAAGGTTGGATCAGTGCAGATGAAGCGATCCATGCCGTTCCTGATACAGCAGAGCGTAAGTTAACGTTACCTTATGTTCAAATACAGAGTTTATCTAATCAGAATGTTATGCGGGTATTTATTGAGCATAGCAAGGTGGTGAGTGATGCAACGGATGGTGTATTTAGTAGTTATGGATTAAGTGCCACCGCAACGATCCCTGTATTTTAAGTGCTGTTTTGATTGTAATAGCAATAATGGGTTAGATGAGTATTCATTTAACCCTTTTTTTTAGCCTTTATTCGTTGCATTTAAAATCAATGAGTTATAAGTGATGAATAAAAAAGGGGTAAAAGAGGGTTTTTAGGGTTTTATTTAAATTAAACAATCGCTTATTATAGTTTAGCTTCA # Right flank : TAACTAAAGTACACCGCGAACGTATTCTGCTTATTCACTGCCATATAGGTAGACATATGCGTTAGCCGCATGTTTATTCCATCTGACAAACACAAAACATTTCGCTAATAAACCATATTATTCATATTGTTAATAACTGTTTTCTAAATCGTTGTAGGTTGGGGCAGCGATGTTTACTATGTGCTACAAAGGATTTGTTGTTCGGTAAAATAAATGAAGAAAGATAAATACAATAATATTGCGGATCATATTTTTAAAGTAGATGCAATAAAAATAGCGGTTTATGAGGTTATTACGCATAAGATGACAGCATACAGAGCTGAGATTGTGTATGGCGTCACACCGAATACGTTGAATCGTTACGTTAAAAAATTCAATGCCGAGTTAACTTATTTACAAGCTTTAGGTTTAAAAGAAAAATAAATTATGTAAAGTCCAGTACCTACTGGACTTTACATCAGTGTGATAATGCTGCTTCATTATTCTCTCGTTCAAATGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 20170-21637 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYMX01000031.1 Photobacterium phosphoreum strain FS-2.1 CFSAN065481_31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 20170 28 100.0 33 ............................ GATTACCTGCTTGATACCCAAGCAATGCTATTC 20231 28 100.0 32 ............................ CATATAGCAATCCAGCCAAGTGTGTCTTTAAT 20291 28 100.0 32 ............................ ATCAGGAGCAATCGATTTAACTATCATCGCTA 20351 28 100.0 32 ............................ TCGTCAACAACATTACCTTCGAAATCGTAATC 20411 28 100.0 32 ............................ CTCGCCGATGTGGTCATATACCCTATGTGGTA 20471 28 100.0 32 ............................ ACGTGATGCTAAGAAGATTCGAGCAATTGCTA 20531 28 100.0 32 ............................ ATCAAGTCTAGCCAGCTAGCTAAATTTTACTG 20591 28 100.0 32 ............................ AGAGGGTGCTGTCATCAATGTTGATGGTGAAG 20651 28 100.0 32 ............................ GTTGGTGGTATAGCCAATACCATCCATTGAGA 20711 28 100.0 32 ............................ TTGCCAGTCACGCTTTTTATTGAGTTCATCGA 20771 28 100.0 32 ............................ TTGTGCGCCTTGCGGAAGTTGTAGTAAGCATA 20831 28 100.0 32 ............................ GTCAACGTGGTTAGAAACCGAGGTTTCAGCAA 20891 28 100.0 32 ............................ TCTGATAAAACTTCTTAGATCGCGTAAATCGG 20951 28 100.0 32 ............................ ATAAAAACACACAGCAGATTTCAGTTCCAACT 21011 28 100.0 32 ............................ TCGCGAAGAAAAGACCAACTCAAGCGGTGACT 21071 28 100.0 32 ............................ TGTAATGTTAAACGCTTTTTTCTTGCCGTTGA 21131 28 100.0 32 ............................ AGTATGCTCGAGCATTGGCGCACTTTCATACG 21191 28 100.0 32 ............................ AAATGTTTGCATAGTCTTTGTAAATTCAGTGG 21251 28 100.0 32 ............................ TGAGTACATTGTTAGTTCATCACATGCCTTAT 21311 28 100.0 32 ............................ ATCATCAGCATCAATCCCGTTTGCATCAGTTA 21371 28 100.0 32 ............................ CCAGTTAGTAGTGCGACAATTATAAATGACAA 21431 28 100.0 32 ............................ ACTATAAATGGGGATGTTCTTTATTGTATTAG 21491 28 100.0 32 ............................ TAACATCTAGCACGTTCACCGCTAAACGTGAC 21551 28 100.0 32 ............................ AGGCGCAGAACTTACCCACTGACGGAAAAAAA 21611 27 82.1 0 ...........T........-..TT..T | ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.3 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TCTACTTCATTGGCTGAAAATAAGGGCGTTCCGCCACCACCGCAAAAACCAACTAGCACGCCAGCTTTAGCTAATTCGCGCATTGCAGCTTGGGTAATCGATGTGCCTGTTCCGAGCATTATGGCGGTCGTGTTTGCTATAGGGATATTCCAATATAACGATTGTTTACCTTCGTCAGTGACATATTCAACCCGCCCACCATTCACTAACACGCGACAATGTTGTAAATAATAAAGATTGGCACGTTTTGAATGAATAATGGTTTTTAGCTCACTCGGTGTGAAAGACTTAGCGCACATAGCGGTCACCAACAGTAAAAAACGCATTATATACATAGATACACATAATGCGTTTAGAGTGTAATCACAAATACCCTTTTTATTTGGTAACTATTCAGGCTATATAAAACAACAACTTAAAATATCAGTTAAAAAAAGGGTTTTTGGTGGGAATTTACTGTTTGGCTTTTATAAGCAATCACTTATACTAATTTTGCTCCA # Right flank : TTACTGGCAGCAGCCATGGCTTCTTTTATTTCATCTGAACCATAACCTTTTGATGACAGGTAGGCATAGGCTTTACTTTTATCTTTAAAATTCGACAAATCAAACCGCTTTTTCGCTAACACTAATTGGCAATTTTCATAAAAATCGACCTCACCCGCTTCCTCTAAATCATAGAAGACTTGCTCAAGATTAGTAATATCAACATGCTTCATTTTAAGCTCTTGCTTAATCACTGTTTTGCCTTTGAGCTTACGGACTAACTTCAATACTTCTGTTTCAAGATCAGCATTCATGCCTTTGATTTTTGCTTTGGTTAATAGCGTATCGGCAGCATCATGTTCCGCAATCGCTCTTGAAATATCTTGAAAACTGTATCCTCGCTTAGTGAGATCGTTGGTTATTTTCTCTTTGGTGGTTTGACTAAAATCATCATAACTATCTAAACGACTTTTGATCATATCAAGTTCAGACACTTGTTTTTTCTCCATAATATCAACTAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //