Array 1 339243-338267 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRV010000002.1 Nostoc sp. FACHB-152 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 339242 37 100.0 42 ..................................... TTCACCCCAAAAATTGATAGTTGGACAAGCCGAAGAAGGCTT 339163 37 100.0 38 ..................................... GTAACTGGTATTGACCCCTTGACCGGAGAGAATACAGC 339088 37 100.0 33 ..................................... ATCCTCATCATCTAGTACCGGGATATCATCATC 339018 37 100.0 34 ..................................... ATTGCAGGGAGAAAGATGGTGATGGCTGTAGATT 338947 37 100.0 31 ..................................... TTACAGTGATTGACAAAAATCGCCAAGACTC 338879 37 100.0 36 ..................................... AATTCGTGTAGCTGCTTACCAGAATAATCTTCACTC 338806 37 100.0 35 ..................................... GATTCTCTCTGAAACTATAGAAAAATCAAGCATTC 338734 37 100.0 36 ..................................... TCTTCCTCTAACACTGGTAGTTCACCGACTGGGCAG 338661 37 100.0 34 ..................................... GTGAGCAACTTAAATCTACATCGCTCACAATTGA 338590 37 100.0 32 ..................................... TGAAGATGACGAAACTAAAGAAGAAGGGCAAA 338521 37 100.0 36 ..................................... GCTGTGCCTATTCTTCCTTTCTTAGGATTACTGGCA 338448 37 100.0 36 ..................................... GTAGGATAACTCAGACATTTAAGATACCTCCAAGGT 338375 37 100.0 35 ..................................... ATCTAATCAAAGATGCTAGGGAAGGATTACGCCGA 338303 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 14 37 100.0 35 GTTGCAACATTAACTAATCCCTATTAGGGATTGAAAC # Left flank : AAAGAACAACCCACCAGCGAAAGGTTTGCCGAGACAGCATTACTGATGTATGATATGCTCTCACGTATTAAAGAATCAACATTACCCGGAAGACCTCGTTTAGGTTTGCGACAGGTAAAAGTCACCGTAGGCGAGCCAATTTCTGTAACCGAACGCTGGGAAAAATCGCAAAATAACCGTCATGCAGCCAGACAAGCAGCCAGTACATTAACCAAAGATTTGCAGGTAGCGTTGGAGAATTTAATTCATTAGTTGGCTGTCTATCTTAACCAAATGCGCGGATGGGTAGGTGTAGAAAATTAGCTTTCAGAACAAATCGCTGTATGGCTTGCAATACAGGCTTTTGCAGAAAAATTTAATTATGATTACCCGCGCACCATGCTGTGTAGGGATTTCAGGTATTTTATGAAAATCGATTTACATTTACTTGTGTTATGATTAGCCCATCCGCGAAATTGAACCTTGAAAACCTCATACTAACGAACTTTCAGTCTCCCGCA # Right flank : TATTTACCTTGGTGCGTTACGCTGGCGCGATAACACACCCTACAAAACTACAAAACTGTAACTCTTTGCGCGAGTTTTAAAATTCTGGTTTTCCAATATTCGTGTCAGAAGTTATTTTGCACTTAGCCTAGTGGTTGACAGCTATACCATATCTCTTCTTGATGATGAAAGTCACAACCGCTTTTGGGAATCATAAGCTAGACAACCTTTGTTGAGGGTTACTGTCATTCGGCTATCTGCAAGGAGACCACAGATGCAGCTAAATTCGCTAAAGCGGCAATTTCTAGCCAAGCTCGATCGCCCATTTATCATAGCAGCGTTAATTATTCCTATTGTCCATCTCGGACTGGGATACATGGGTTTATCTATGACATTTGTTAATGGTGCATCAGCATTTTGGCCTTCGTTTGGTGTATTTTTAGCGGGAATGTTATTGGTAGGCTATCGTATCTGGCCTATCATATTTTTGAGTGATTTTACTGTAAGTTATATTCTTTTTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACATTAACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 1 1112-128 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRV010000031.1 Nostoc sp. FACHB-152 contig31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 1111 37 100.0 37 ..................................... GATTTCTGATGAGATATTTGAATTAATCAAAACCAAA 1037 37 100.0 34 ..................................... ATTAAAAACTTGATTATCTCCATCAGCTACAACT 966 37 100.0 35 ..................................... GGGTGTAGGCATAAGTTTTTAATAATACAAAGAAA 894 37 100.0 36 ..................................... TTGACTCCCATTACACTCAAGATAGCCGAAGCCTCT 821 37 100.0 37 ..................................... TTGCAGAATAAATTTATCAAAAGCCAAAAATGCTAAA 747 37 100.0 37 ..................................... GCGTGGCTAACTAAGGTAATTCCCAGAACTTCATATC 673 37 100.0 33 ..................................... ACTTGGTATTGAGTCAACTGTCACGGAATCATT 603 37 100.0 35 ..................................... CCGTTACTGTTGTTGGGGTGCAGGTAGATTGTGTT 531 37 100.0 32 ..................................... TGGGAACGTTCCCGGCAAGACACCAACCTGTT 462 37 100.0 43 ..................................... TTTTTCTTAGTTGCCACTCCCAACAATTAAAAGTTAAGTCAAG 382 37 100.0 34 ..................................... ATAAGCGTATACTGGTGGCACTAAACACCAATTT 311 37 100.0 36 ..................................... TGCTGCTAATGGCAGAATCGTATTTATAAATCTTCG 238 37 100.0 37 ..................................... CCTATTTTTATCGCCATTACTGCGGGGTGGATGATGA 164 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 14 37 100.0 36 GTTGAAATTTCAAATAATCCCTATCAGGGATTGAAAC # Left flank : GCGCTTCACATACCTTAATGCTTGCACAGCGTAACGCCTGCCGTGGGAAGATAGCTCGTAAATCAGCCAGCATATCCAGCGATTTACAAGCCTCTAAACATTCGACGATGTAATCAATTGATTCGAGGGTGAGCCATTCGGGAGTTGCGTCCAACTCGCAGATGTGATACTTCATAAGGAGTGCAATCACCGTTTGGTTTAATCAAAGGCTTATATCTAGATTAAGCGATCGCTTAATTTTTGGTTTGCCAGTGTCCATCAAAAGATATCGATTTGCGCGGATGGGTAGGTGTCAAAAATTAGGCTTGAATGAAAATCGCTGTGTTACTTTCTGTACAAGCTTTTGCAAGAATAATAAATTAAAAATACCCGCGCGTATTGTGCAGACTGGGTTTCAGCCATTTTACGTAAATCAATTTAAATTTATTAACAGTATAATTCGACTATCCGCGAAACTGAACCTTGAAAACCTCATAAAAACTAACTTTCAGCCTTCTGCC # Right flank : CAACTGCCACCTTACCAAGTCGTAATTTATAGAACCCATTTGACATCTTATGAGGTTTTGAATTAAGGTACTCCTCAGCATCTAAAATCCAATGCTAATGGCGTATTCCAGCGACTTCACTGATGCAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCAAATAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 1 23017-23857 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRV010000041.1 Nostoc sp. FACHB-152 contig41, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 23017 37 100.0 36 ..................................... AGAATCAGATTCTTGCAAAAATCTTAATCTTCGCCA 23090 37 100.0 35 ..................................... AAGTTTTGGAATAGCTTCCTGGTTCACTTTCTCTT 23162 37 100.0 42 ..................................... TTTCAAATAAGTCAACACCTGATTTTTGAGAATAATGCTCAA 23241 37 100.0 37 ..................................... GTATACTTTTTTATATAGTGGAGGTTTTGAACCTTCA 23315 37 100.0 34 ..................................... ATTTTGTAGACTTAGTATCTTTATCAGTATCTAT 23386 37 100.0 36 ..................................... AGCATCACAAGACCAACAAAAAACACCTAATCAAAA 23459 37 100.0 35 ..................................... CAGGACAGGAAACATATAATAGAACTTTTCTAACT 23531 37 100.0 35 ..................................... AGTAGTTACAATAACTATCTTTTTATTTAGTGACC 23603 37 100.0 39 ..................................... CCGCTTCGAGGAATGCTTTACTCATCTTACGACCTCTAC 23679 37 100.0 35 ..................................... AGTAGCCATACTCCATAATTAAACTCTACAAAAAA 23751 37 100.0 34 ..................................... AAACATCCTTGCCATTTATCCTCATGATCAGTAT 23822 36 83.8 0 .............G....A.....T..A....-.G.. | ========== ====== ====== ====== ===================================== ========================================== ================== 12 37 98.6 36 GTTGAAATTTCAATTAATCCCTATCAGGGATTGAAAC # Left flank : GAAAGTGGTTGTATCTTACGATGTTCCAGAAGACAAACGCCGGACGAAAATCCATAAAATTCTCAAGTCTTATGGACAGTGGGTGCAGTATAGCGTGTTTGAGTGCCAGCTTACCGAGACTCAATATGCCAAATTGCGATCGCGTTTGCACAAATTAATTAAACCAGATACCGACAGCATCCGCTTTTACTTTCTCTGTGCTTGCTGTTTTGATAAAATCGAACGCATCGGTGGCGAACAACCCCGCGACGAAACCATTTTCTTTGCTTAATGCGCGGATGGGTAGGTGTAAAAAATCGGGCTTCAGGAAAAATGGCTGTATTCCTTTTATGACAAGCGTTTGCAGAAAAAATAAATTAAATCTATCCGCGCGCCTTGTACAGTAGTCTAGGTTTCAGCTATTTCCCTTTCCTCAACCCATATTCTCTACTGTTATAATCAACCCATCCGCGAAACTGAACCTCGAAAACCAAATACAGACTAGCTTTTGGGCTACCGCA # Right flank : CATCTTACAAAATTATTTGCGCGCTTTCCTTTGCGTCTTTGCGCCTTTGCGCGAGGCAAAAGAATATTGATGCAAGAGGTTTATTGATACCTCCTACCTTAAAAATAGAACTCACCAAGGATTACCAATCATCGTAAAAGCTGACCAAAAATAAGGATGATTCAGGCTTTTATCACCCAGTTCTATCAAAGCTGGCGGGAGAGTAAAATCCCCGCTAGGAGTTTTGAGTTTGCCATCTTCTAGCCTGACTTCTCCTTTCAGCATTCCTACTTGTGCGCGTCTGAGGGCTTCGGCTTTGATGGGGGCTTTTCGCAGCTGTTCATAAAATTCGGTCATCAGTCCAAAAGTGCCTTCATCGGAGACATACCATAAACTTGCTAACGCAGACTTAGCACCAGCTTGCACAGCAAAGCCAGCAAAACCTAACTCTGCTTCTTCGTTACCCAAGGCTGTACGACAAGCACTCAACACTACTAATTCGACGGGTGGTTTATTCCAGC # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCAATTAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 75515-77147 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRV010000005.1 Nostoc sp. FACHB-152 contig5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 75515 37 100.0 37 ..................................... AATGGAACAGTTGAAAAAACTTTCTGAACGCCTTAAA 75589 37 100.0 34 ..................................... ATCTGGCATTTCGTAATATCCTTTAGAGGCTAGA 75660 37 100.0 33 ..................................... TCTAGCTCAGTGATTGTTGTAGCCGAATTTTTT 75730 37 100.0 35 ..................................... TTTTCCGATTAGCATAAGCCAAAGCTCCAGCACCC 75802 37 100.0 36 ..................................... CTGTACCATCACCATGTTTTTCAAAGTCGTAAGGTT 75875 37 100.0 34 ..................................... GAAACGCCAGGAATGCTAATAGTTGGAATTGAAA 75946 37 100.0 31 ..................................... TTGTTTTTTTCAGACAAGATTCTACTCTTTA 76014 37 100.0 33 ..................................... GTGTGAAATTTAAAATTATTGAACTTCTGCAAA 76084 37 100.0 40 ..................................... CTTTTTTCTATTAAATACCTACTTCTCCAACCTCCTTTAA 76161 37 100.0 34 ..................................... CAAACGTACACACATTTAATCAAACATAAAGGAA 76232 37 100.0 38 ..................................... CTTCTAATGGATACGGTTTAGCAGCTACCGGAACTCAA 76307 37 100.0 35 ..................................... TAGCAGCTACCGGAACTCAATGGATAAATGTAGAA 76379 37 100.0 32 ..................................... TCTGTATCCTCAAACGTGAAATCAGGTAATGC 76448 37 100.0 37 ..................................... TGAAGTACCAGAGGCTAATTTCAAAGCAACAGCTTAT 76522 37 100.0 35 ..................................... ACATAAAAAAGCGCGGCTGGCGCGCTTAACAATTG 76594 37 100.0 36 ..................................... AACTTATCCAGGGTTTAGACTTATTTAAAAAGTCAC 76667 37 100.0 39 ..................................... CGGATTATGCCTTGTCAGCGTGATGTTAAGAACGGGAAT 76743 37 100.0 37 ..................................... TTGCAGCTGCATTGTTTTTGCTTCAGTAGCCGCAAAG 76817 37 100.0 40 ..................................... GCTCTGGCTTGATTGGAGACTTCGCACCAGTGACTTTAAC 76894 37 100.0 36 ..................................... TAAAACGCTGAAAGCCTTATTCTATAAGAGTTTAAA 76967 37 100.0 35 ..................................... CTAAAATTTCTTCCTTACCCTGGACTAATTCTAAG 77039 37 100.0 35 ..................................... AGTTTCTAATTGTGATAATGGGACTGCTTCATAAT 77111 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 23 37 100.0 36 GTTGAAATTACACCGAATCCCTATCAGGGATTGAAAC # Left flank : ATGGGTAAAGGAGATTTGGTGACTTTTCCTGCTGGTATGTCCTGTATATGGGAAGTTATCAGCGACGTAAAGAAACATTATTATTTTAGTTAATCCATAAATAGTCAAGGATTATTTCTTTTGCATCCTTGAATGATCCCAACGCAAGTATGCCTCAGTTTACTTGTATAATGGTTCGCAGCGATCGCCTAATTGCAAGTTTCACAATCCTTTGCAAAGCTCGTTACGAGATCACCAAAACAGTCATGCCAAAAATAAATAGTCTAATTGCGATCGCGCGAATGTGTAGGTGTACAAAAACAGGTTTCTAGCAAAATGCCTGTATCCTTTGCTGTGTAAGCTTTTGCGAAAAAAATAAATTAAAATTAGCCGCGCATCTTTACCTGTAAGGTTTTTGGGGTTCTTGCGTAAATCAGTTGATATTTTATAGTGATAAAATCAGACCATCCGCGAAACTGAACCATGAAAACCTAATAAGCATTGACTTTCAGCCTTCCGCA # Right flank : CCTGCATTCATAATTGGGAAAGGATGCTATACAGCAGAGAAAGTGGCCTTTCACAGCAATTGAAATGAGGACGTAGATAAAAATGTTATTGCATTTGAGTACTTGGCAGGAAGTTGAAACTTATCTACAGCAGTCTAAGGGGATAATTTTCCCGATTGGTTCTACAGAACAGCATGGGCCGACAGGATTAATTGGTACTGATGCTATTTGTGCAGAGGCGATCGCTCGCGGTGTGGGTGAAGCGACTGGGGCGATGGTTGGGCCTACAATCAATGTAGGGATGGCATTACACCACACAGCGTTTCCTGGTTCGATTAGTTTGCGTCCTAGTACAATGATTCAATTAGTACGAGATTATGTGAGTAGTTTAGTCAAAGCTGGTTTTACTAAGTTCTACTTTATCAACGGTCACGGCGGTAATATCGCTACTCTCAAAGCAGCTTTCTCCGAAACTTACGCCTATCTCGAAGATTTACAAATTCCCGATGCTCATCAGGTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTACACCGAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 37494-37815 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRV010000069.1 Nostoc sp. FACHB-152 contig69, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 37494 36 100.0 38 .................................... GTTACTTTGCAAGCGCAAGACCCGCCTCCCACGAATTA 37568 36 100.0 34 .................................... GGCGTAGTTAAGCTAATGGCTTTTGATGAAGATT 37638 36 100.0 36 .................................... TTGCCTTGAATTACAGTAAAGTTTGCACCTACAGCC 37710 36 100.0 34 .................................... CTTGATGGAGACAAATCATTAATAGTAAAGTTGG 37780 36 97.2 0 ........C........................... | ========== ====== ====== ====== ==================================== ====================================== ================== 5 36 99.4 36 GTGCTTTAGCATTAGATGTCGTTAGGCGTTGAGCAG # Left flank : TTAGGTGAAAGCCGGGACTTGGTGAATGATATTACTCTTTTACCTGAAAATTACTGTGCAGAATCAATGCGATGGTTAATTCGTGATGAATATGGGTTACTCACTTTACCTTACTGGGTAGACCATGTAGGTTCAAGAGGAACACGATGGCTGCGTTACGAGATTCAGGAATGTCAAGTATTTCAACCACCAGAATTATCTTGGACTTTGGTTCAAAGTGATTAGAGGTATCTTAACTTTTGCAAGCACCTCTGCTTGGGAAATTTAAATGCTATCAAAAGTAGTTTTACTTTCTTATTTTACGAGCCTTTTAGGGATTTTATATGCTTCCAAGGTGCTTGCAACTTCCTAGAATGCTTTAAATATAAGGGTTAGCAGTTTTAACAACTTCGTTTTTGCTGTGAATAGCTATTAATTTTTGCAACTTGGCTAACCTTAAATAGTAGATGCTTGTAAAATTCATGTAGAGCTTAGGCAAGTCAATAAATATGGCTATCGCT # Right flank : GGTAGAGATAGTGCCGTTATTCGTACATCCAGATTTGGGATTTGTCATGAAATGTCTTTAGGCGTTATTGGCTTAGATATAAATAAGTTTTCTCTGAAGACAAGATTAGCGATCTTGAGTATCTTCATTCCGGTAAATTTTGGCGATTATTTTTTCCCATTGCTCAATTTGGTTCTGTAGTTGTAATCGCCGATCGCTCAAATCTTGACTATCATCAACAGACACATCCTGACCGCTTAATCGTTCATGATAAATAGCAATCAGTTCGGTTAGGGCTTTTTTATTGCTTGCTGATCCTCCTGGGTCAGAGAACTCACATTGACTGGAATCAGCTTTCTGCCAATTCTCTCCACAAATTCAGACCGACTTAAATCCATGCTGTCGGCGATCACATCTAATCCTTCAATCCCGGTAGGAGTTAGGGCTAGGTTAACTCGTTTCTTCACCTCATCGTACAGTTCTGGTACGTCTTTTTGACCTTTTTGCCCTTTCTTACCCAT # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTTTAGCATTAGATGTCGTTAGGCGTTGAGCAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.80,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 4806-6689 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRV010000073.1 Nostoc sp. FACHB-152 contig73, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 4806 37 100.0 36 ..................................... TTTAACTAAAATAGCTAATCTTTCATCTTCCATAAA 4879 37 100.0 39 ..................................... ACGTACCTGCTCCGTGTTACTCGAATGCTCTTGTTCTGC 4955 37 100.0 38 ..................................... TTCACCTATAGCTGATGAACAAATATTAGATTGTTTCT 5030 37 100.0 36 ..................................... GATTTAGCAACTTATTACCTAAATATACATATGTAG 5103 37 100.0 35 ..................................... TCTGACAGTTGAAATACCATCTTAAGCATTCCACA 5175 37 100.0 37 ..................................... AAGAATTAAAAAACCTGTCGCCAGAGCAAATGGCAGA 5249 37 100.0 38 ..................................... TCTACTAATTTACCAACAGCATCAGTTAGCTTAACTTA 5324 37 100.0 37 ..................................... CTAGGTAAAGCGTGGGGATATTAAAATGCCGTTTTAT 5398 37 100.0 33 ..................................... ATTGAACGCTTTTCTAGGGTCAAGCCAGGGAAA 5468 37 100.0 41 ..................................... ATGACTTGGTTGATTGGAGTTGTTCTTGGAAACTCTGTTGT 5546 37 100.0 36 ..................................... TAATATGTGAATGGTGTGCAAACAATAAAGCTTTTT 5619 37 100.0 35 ..................................... CCGCCGTCTATAGGGTCGGTTATGGTTTGTACGTT 5691 37 100.0 36 ..................................... TCCCTTCACCAAAGTTGAGGCTAATATCCTTGACTG 5764 37 100.0 38 ..................................... TAGTATCGCTTCAGACATACTGCCTCGCATGTCGCCCA 5839 37 100.0 37 ..................................... ATGAATATGCTTATATAGAAAATATTACTGAAGAGGA 5913 37 100.0 37 ..................................... TGGCTATTCTGTTAACCACTGGCGGAGCTAGAAGTGC 5987 37 100.0 37 ..................................... CAATAGCTTTCACCCAACTGAAGAATTCAGTAATTTC 6061 37 100.0 37 ..................................... TCTATTGCGGGACTATCTGTTAATAAACGGAAATCAA 6135 37 100.0 40 ..................................... ATTGTAATTGTCCCGGAAGTAGCCGATGCTTTTATCTTAG 6212 37 100.0 36 ..................................... GCGAGTTAATAGCCCTGGATAGCTAGGAGATTCCGC 6285 37 100.0 37 ..................................... TCTACATCTTGGAGGGGAGATACGCAAATCCCCTCCA 6359 37 100.0 37 ..................................... TACATTCGGGATGAGTTTGAGAAGCTAGATACTCAAA 6433 37 100.0 38 ..................................... TCTAATTTTACTAAAGACGGTAACTACAAAGCAGCACA 6508 37 100.0 35 ..................................... GTTGCATAGTGGTGCTGATTTCTTTTGCCGTCATA 6580 37 100.0 36 ..................................... CTTCACGAGAAGCATGGCGAAATTGACGTTCATCGT 6653 37 94.6 0 ..............................T.A.... | ========== ====== ====== ====== ===================================== ========================================= ================== 26 37 99.8 37 GTTTCCAAACCTCATTACCCCTCACGGGGACTGAAAC # Left flank : CTATCTAATTATTTATGATTTACCAGACAATAAAGCAGCTAACAAACGTCGTACTCGTCTGCATAAAATGTTGTCTGGTTATGGCAAATGGACGCAATACAGTGTGTTTGAATGCTTTCTGACATCTGTACAATTTGCTACACTACAGACAAAAATAGAAAAACTAATCAAGCCAGAAGAAGATGCTGTCCGAATATACGTGCTTGATGCTGGTGCAGTGAGAAGAACCATCACCTATGGTTCGGAAATTCCTCGACAAGAGCAAACAATCGTCTTATGATGAATGTATCGACTTGATGTTTGACAAGTCAAAGCGGGGTCAAAAACCCTGGAGATTCGTCAAAATCGCCAGAACCTTGACAGCATAATAGTTACAGCGTTTCATAAAAGGGAGAAGTTGCAAATTAATTGCAATAAGGACGGCTGAAAATGACCAGAATTTTCGATCCGTCAAATCGCTCCCCAGGAAGCTTGCTCTGGTTAAGTTTCAGCACCGAGCC # Right flank : CTATTAGCAATTTTGTAAATCACGAGATGCTAAACTCAGCGATCGCCACAAGAGCATTTACTTCTGCCCATCAGTAATTTTCCCCAAAAGGGGATGATATCACATAAAATATTGAATCATTCTTCGACTCAACCCACACGATGCCCAGAGCAGCCACAGCCCCCAAGCGTAAGCCTAGAGCCAAATCAGCACCGAAAGACTCAGTGCCGACATGGGCAGATGACACCCAATTAGTAGGCTTAGTGTTTGATTTAGAGGCAACGGCAACGGCTTCTCTTTACTCGCAATACACAATTGGACTCCACGCTTGGTTTCTCGACCAAGTACGCCAAGTTGACCCAGACTTATCAGCTTACCTCCACGATGGCGAATCAGAAAAAGCCTTCAGTATCTCCGCACTAGAAGGTCAACTACTCCCTAGCGGCAAGCAACTGAAACTTGTCGCCAACCAAATCTACCACTGGCATATCAACGCGCTATCTCAACGAGTGGCATTGTTC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAAACCTCATTACCCCTCACGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 14960-15581 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRV010000009.1 Nostoc sp. FACHB-152 contig9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 14960 37 100.0 36 ..................................... ATTCTTTACGCGCATTGCTACGCACTAAAAAAGCAA 15033 37 100.0 38 ..................................... AATATACCTAGTTGCTCTGTAACTCAATGGCTACGTTT 15108 37 100.0 35 ..................................... ATTCATCAAGACTATAGATGCCGTGATACAGTACC 15180 37 100.0 35 ..................................... ATCAAACCGCTTCCCTTTCTTTGGATGGCAGCACT 15252 37 100.0 38 ..................................... AATATAGAAACGATAAGCGGAATGTAGAAATCGCTGAA 15327 37 100.0 35 ..................................... GAAGCAAGATCGTTCAACACCACTACCCCAGATAG 15399 37 100.0 35 ..................................... GGCAGGACAACTTTGGCTAAATGGCGTGTTGTTTG 15471 37 97.3 36 ....................................C AGAAAAGACTCACAAGTAATTCTCGTGAGTCTTTTG 15544 37 73.0 0 ....A..T..A....A.A.T...AAC......A.... | G [15578] ========== ====== ====== ====== ===================================== ====================================== ================== 9 37 96.7 36 GTTTCAACAACCATTCCGGCTAGGGGTGGGTTGAAAG # Left flank : GTTAACTCAACAATCCGAACCTTGAAAATATAATATTGTTGTAATAGCGCCGCAGTTCATGCTCTTTTGAGCCAATGTGCTGTGAAAAATCTGGGTTAGTTTGGCGGTTGGAAGACTGTCATGCTTTCTGACCCTGGTAGCTGCCCGCTTCTGATGCTGCCATCTGTAAAATTTTATAGATGGGATAGGTGCGCTCCCAGCAATAAGAAGTAAGGCTTTGAGCTATAGCTGTTATTCATAACGGTGTGGATTACCACAGTGGTGGCTACTGAATCACCCCCTTCGTCGGGGGAACCCTCTCAAATATTTTTTTGGCATATCGAAGCGGGGTCAAAAACCCTGGAGACTTGCCAAAATCTTAAAACCCTTGTCATATCTTAACTTTAGAAACTAGTATGTCAGTTGATTTACTTTTTTGATGTAAGACAAAGGAGGCTTTTTCAGAGATATGCCAAATTTGTATCTGGAAAGCTTTATTTACAAGGGGTCTAGACGGCGGG # Right flank : GAATATTTGAAGCATTAAAATTTTTTTGAGAGGGTTGAAAGGCGCACTTCGTTCGGGAATATTCTGAACTTTTTAGCATATTCTACAAGTGTAGTGGAATCACTCCACCACATCACAGTTGCGACATTAATTTGCGAAAACTTAGTATAATCTAAGTTGATTGCAAAAAACAGTCAAAGCGACACTAATTTGCAAAAAACGACATTAATTTGCAAATTGCGACATATAATGTGCGAATGTACAAAAACATATCGGGATGACTGGATTCGAACCAGCGGCCCCTTCGTCCCGAACGAAGTGCGCTACCAAGCTGCGCTACATCCCGCCAAAAAATGGCACTATCTGTCTATTTTACCACAACAAACAATGAAAAGCGAGTGCTAGCAATCAGGCTGATGAAAGTAACAAAGGACAAATGACTATTGACCAATAACTATATATGTGTGCAGCAAGGGCTTTGCTTGCTACGATTAAATTTGTATAACTTTCAGTGGTAAAAG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACAACCATTCCGGCTAGGGGTGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.30,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 20493-19187 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRV010000091.1 Nostoc sp. FACHB-152 contig91, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 20492 37 100.0 39 ..................................... TTTACTTAGCTGGTTTAATGTCTGTTCTAACTTCGATGC 20416 37 100.0 39 ..................................... AACTTGATTAAAAACGATATTACACCTGTAATACAATGG 20340 37 100.0 37 ..................................... AGAGTAAATGGTTATTAATAACCAACAAAGACTGAAT 20266 37 100.0 37 ..................................... TCCATTGGAGTGAGGATGAGAGATTGACAGCCATTAA 20192 37 100.0 41 ..................................... AGGCATCAATAGTTTGCAGATGTTTTGCAGGAATTTATAGA 20114 37 100.0 36 ..................................... TCTACAATTACTTCGACTTCGTTACCAGGGTTTTCG 20041 37 100.0 36 ..................................... TTAGTAGTTAAAAGGTTTAAAGGATTTGAAGGAAAA 19968 37 100.0 39 ..................................... GTGTAAGAAACGGGAAGAAAACCAATGCCACTACTTGGG 19892 37 100.0 39 ..................................... CTAGCACAACAGTTACGTCGCAAATTACAAGTGCTTTAT 19816 37 100.0 37 ..................................... TTAGAAGATTGCAAGCCTTATGAAAATCAATGAATTG 19742 37 100.0 37 ..................................... ACGCTAATGCGTGGATTAGATATCAAGCTTATCCGGG 19668 37 100.0 38 ..................................... ATATTATAGTCTTCCATTAATAACTCGATGGATTCTCC 19593 37 100.0 36 ..................................... GTAATGCAGGGTAGACATGGCTCCAAAGCATAGGAA 19520 37 100.0 39 ..................................... GTAAAGGAGGGTTATTAAGGTCAAAAAGATTAGATATAA 19444 37 100.0 36 ..................................... GGGTAGTTAAACGATTTCCATTCTGGGTCTGAGTCC 19371 37 100.0 38 ..................................... ACTGAGGTAGCTACTGGGCTAGCCTGAGGGCTACTAGG 19296 37 100.0 35 ..................................... ACAATTTAAGCAAGGCAGGTAAAGCGGGAGGTAAC 19224 37 81.1 0 ........C.....C........A...AA...A...T | T [19189] ========== ====== ====== ====== ===================================== ========================================= ================== 18 37 98.9 38 GTTTCCACTAACCATTACCCCGCGAGGGGACTGAAAC # Left flank : TACCCAATGCTCAATTATTCGGATAGTGAATATCAGCAGGTGCGGGAGGTGTGCGGTAAGCGAAGCCATGCCGTTAGGCTTATCGCATTACAAGGTTGTGGGAGAATGAGAACTTGGAAGATGCTGCCCTTGCTGTCTTAAAACATTGGGGGAGTTGAAAAGGCCGTATTTAACAACTGTGGAGGAAAAACTACTGAGTGTGATTGAGCAAGAATCTAGGATTACGGATTGACTTAAACTGTGAAAAAACTCGACAATATATAGATAGTTATTTTATGATTATGTAATCAGCTTGATGTTTGTCAAACCGAAGTGGGGTCAAAAACCCTGGGGGGTTTGCCAAAAAAGCCAGAACCTTGACAAGATAATAACTACAGCGTTTCAACAAATCGGGATATTGCGAATTAATCGCAGTAACAACGGCTGAAATTGACCTTTTTTTGAGGTTCGTCAAAATGCCGCCCAGGAAGCTTGCTCTGTAACAGTTTCAGCACCGAGCA # Right flank : TGAAAGAGCCGATGCGATTGCACTCTGCCATAAGTCCCCAAATGGGGATTAACTTGAATCAAATTCTTAGCTTTCGTTACAGAGTGCTTGAACCACCTGTGAAAACTCCTGGGTCAGAAAGTCCGAACCGCTTGCACTATAAACTTGCTGCAACTGCTGGTAAAACCATAAAGTTCCTTCTTTGCCAGTTTTGAACTGTTGCCAAATGCCACTGCCATGTTGTCTGTAATCTGCCAGTAATGACCTTGCATTGTGCAGCTTATCTGCCAACGATACCCGCCGGACTGAAGCTGAAGCATGACGCAGATTGTCTAAATACCTTTGCTTGCGTTCTTGCCAAGGTGGTTTAGGGTATGTGTCGGATTCAGTACAAGCATCCACTATTGCAACAACTGTCTCACCAAAATGCTGGCGTATTTCCTCACGAGTGGATTTACCGCCTTGGTCTTCGACTGCATCGTGCAATAGACCAGCGATCGCTTCTTCTTCGGTTCCGCCAG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCACTAACCATTACCCCGCGAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 22059-23595 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRV010000091.1 Nostoc sp. FACHB-152 contig91, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 22059 37 100.0 41 ..................................... CTAACGCCTTGAAGTATTGACTTCTAATTATTACTTGTATA 22137 37 100.0 46 ..................................... TCCTGCTCGGTCATCCTGACATTATTTAACCCCGTAAGATACCAGT 22220 37 100.0 39 ..................................... AGTGGATACATTGTTAAACTCCTGTTGATAATAATCTCT 22296 37 100.0 38 ..................................... AATCAGATAACAAGAGTAACGAAACCAAGTAAAACAGG 22371 37 100.0 38 ..................................... TTACCAAGACTCATATTATTCTTGAAAACGATACAAAG 22446 37 100.0 43 ..................................... TTGAGAATAATTCTATTAATTTCACTTGTTCTGATGAGATAAT 22526 37 100.0 36 ..................................... CCGACTTGGGCAACTGACCGCATTTATCGTAATTAT 22599 37 100.0 37 ..................................... TCCTGGACTCCAACGAGTTTTCCATGCCGAAGAAGTT 22673 37 100.0 37 ..................................... TTTAGGCGTAGAAACATCATTAGGTTCTTGATTTTTA 22747 37 100.0 38 ..................................... CTACCACAATTTTAGTGTCTCACCTACAGACAACTTTT 22822 37 100.0 35 ..................................... TTGAAGCTATTGATACAAAAAAATATAAGGTTTAT 22894 37 100.0 35 ..................................... TCCTTCGTTCCAGCTTATGCCCCCAATCATCTGTA 22966 37 100.0 41 ..................................... TTTGGAGGTCGTGCCGGCCCTTGATGACTGCGTTGCAATAG 23044 37 100.0 37 ..................................... TTGCATCCGGTTCCATCCCTGAAGCAGTCATGTACTT 23118 37 100.0 34 ..................................... AAGGCATCGTTGACTTTAACAGTTACAGCTACGT 23189 37 100.0 36 ..................................... AACAGAAAGAAAATTTAGTTTTCCAAACTTCTCAAT 23262 37 100.0 36 ..................................... TGAAACAAAAGTAGGTTTAACGGCTACTGCAAAAGT 23335 37 100.0 36 ..................................... GATTAAAACAAGTTTTAGCAAAAACAACTAACAAAG 23408 37 100.0 39 ..................................... TAATCGTCGCTGTATTAATGCCGCTTATCGTTATTCAGT 23484 37 100.0 38 ..................................... TTTATCTCCAGTATTGTTAGTTGAAGGATTAACTACTC 23559 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================== ================== 21 37 100.0 38 GTTTCAGTCCCCGTGAGGGGTAGTTGAGTTTGGAAAC # Left flank : CAAGTGAAATCGGAACACATCTAGGGGAATGAACGCAATTATCCCCAGGAATGCCGCGATTAATAAGCTGGCGAGAATTTTGTCAGCCAGGGGTTGTGACTCTTGAATCGGTGGTTTGAGGCGTTCCTGGTATAAATCATCATCCTCTCGGAACACGCCAATCATCGTCGCTACAGTCCCAACAACGACCATACCGAGAAACACCCAGGCACGCCACCAATTTAACGTCCCGGCTGGCAACAATAGTAAACCACCGAAGATGAGGAGATTCCACATCAGTGCAGTCAAAACCTTGACCATGAACATGATTGCTTCACCTCTATGGCTTTAACACCACGACTTCATTCTCTTACTAGAAATACTAACGAGTAGCTTCTGCTTTTTTGTCAGTCATCAGTAAAAATTTAATAGTGAGCGCAAGAGTAAATAATTTAAGCCCCTTACGGGATAAGAGTTTGTGGAAACCTAAGTGTATTGAACGTGAACAATATTAGATTGAT # Right flank : CAGCCCGGTGCTGAAACTATTACAGGGCAAGCTTCCTGGGCGGCATTTTGACGAACCTCAAAAAAAGGTCAATTTCAGCCGTTGTTATTGCGACTAATTCGCAATTTTTCGCTTTATTGAAACGCTGTAGTTATTATATTGTCAAGGTTCTGGCGTTTTTGGCAAACCCCCAGGGTTTTTGACCCCGCTTCGGTTTGACAATCATCAAGCTGATACAGCCATGATAAGCCGATTACTGAACTTTGTCGAGTATTTCCTTGGCTATAGCCGCATTTAGCCTGTTCTCATAGTGTGACTTGAAGAAGATTTTGGACAGGTTGTCCAACTTTACCTTCCAGAAACGTCCAAAAAATAACATAAAAGAAAGCTAAACTGCTCAAACTATCTCCCTGTATGCAAGATAAAGGTTTTGCTCATAGCGATGCCAAGGACGGCAAGTGATCGCACCCAAGCGTAAAAAATCCCAGGAGTTAGGTAAAAGTTGGCATTTGAGTATTATT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCCGTGAGGGGTAGTTGAGTTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 12175-12960 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRV010000121.1 Nostoc sp. FACHB-152 contig121, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 12175 37 100.0 42 ..................................... CACGATGTTTCTATCGAAAACTCTTTTACAGACTCATGGAAT 12254 37 100.0 35 ..................................... TTATAGGTGGCTTGCACTTGGCTATCCTCAATTGA 12326 37 100.0 36 ..................................... TTTTTGATGGTTACTATTTGCAATCACAAGAACCAG 12399 37 100.0 36 ..................................... CTTGATTAAGGGAGGAACTTTTTTCTACTCTACAGG 12472 37 100.0 41 ..................................... AGCGCGTGAGATAGTATCAGCAGTTTTATTCATAATGCGGA 12550 37 100.0 41 ..................................... GCTTAGGGGAGTATGTAGCAAATAAAGTCCCCGCAGTTGAA 12628 37 100.0 41 ..................................... GCAAAGGTGAACTTGGCTTGTTTTTTGGTGCGAATTCAATT 12706 37 100.0 34 ..................................... TTATTTTTTTTAATGGGCTGCTGGGGAGTTTTTA 12777 37 100.0 38 ..................................... GGTATCTTTCACCTAAGGCGGTAGATTATCTTGATAAA 12852 37 100.0 33 ..................................... GTATTTAGCTTGGCAAAGCACAAAAGCCTCGGA 12922 37 91.9 0 A...............................T...T | TC [12953] ========== ====== ====== ====== ===================================== ========================================== ================== 11 37 99.3 38 GTTGAAATTTCACTTAATCCCTATCAGGGATTGAAAC # Left flank : GTAGCTTTTCGGGGTTCTTGGAACCGCGATCGCGGCACAGGCTATAAAGTAGTATTTGTACCCTTTGATGCAAAAAGTAGACCACAAGGCTACTACGAGGATTTTCTAACAGGATTTTTGCTTGACCCATCTATTCCGACCACTTGGGGGCGACCTGTTGGTTTATTAGTGTTACCTGATGGTAGTTTACTAGTGACAGAAGAAGTTAATAACCGGATTTATCGAATTCAATATACAGGCAGCTAACATGATTTGAGATTTTTAATTAGCTGAATGCGCGGATGGGTAGATGTAAAAAATTGGATTTAAGGAAAAATGCTTGTACTCTTTACCAGATAAGCGTTTGCACCACAATTCAATCAAAAGCATCCGCGCGCCTTACCCTGTCTGAGTTTCAGCTATTTTGCATCAATCTATCTAAACTTTTGAATGCTACAATCAGACCATCCGCGACACTGAACTTTGAAAACCACATAAAACCGTACTTTCAGCCTCCCGCA # Right flank : TCAAACTATAATAATAGCGTCAGCCTTTAACGAGACTGACGCTATTTTTTTTAAATAAGTTCAGGACAAAATAACTAATAAATACGCCCTGAAGATTAATATAATTTCAACACAGTTACTCTATTAAACAGTACTGCGGCGAGTTAACAAATTCCACAAGAAAACGGCAATAATAGCACCCAGTACTGCGACTAAAACCCCAGGAATGCTAAGAGAAGGAGCCGCTAACGCAAAGTTACCCGTACTGAAGAATACTCCTAAGCTACCACCAATAAATGCACCGATGATACCTAACAAAATTGTTCCTAAAATCCCGCCGCCTTGATGACCGGGGTAGATGGCTTTAGCAATAGCACCAGCAATTAAACCTAAGACGATCCAAGCAAGAATGTTCATTGTATTTGTGTTTTGGTAAGGTTTTTTTCTGACACTTTCAGATTAACAAGTTCAATAGTTTTAGCCAATCTATCATCAGAATTAATTATGAATAGCCTGAAGGA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCACTTAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 1 11107-10472 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRV010000136.1 Nostoc sp. FACHB-152 contig136, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 11106 37 94.6 37 ....T.A.............................. TTTGCTAGAAAATTAGGATTACAAAAGCGAATGATTC 11032 37 100.0 45 ..................................... CACCGCCGCCAATAGACCCGGCGCGGATGGATCGGTGTACTCAGT 10950 37 100.0 37 ..................................... TTTGGGATATACCTTTCTTAACGATGTTCAGTTTTTA 10876 37 100.0 35 ..................................... ATCCTGCCAAGTCCAACTAACAACAGCTTTGGTTT 10804 37 100.0 38 ..................................... GTTCGCGCCTGTGTTGATAGCATCTAATAAATTTCCAT 10729 37 100.0 39 ..................................... TATTAATCTCAGCAGGGTTTAAAATTTTAGCTTGACCGT 10653 37 100.0 35 ..................................... CGAACCGCCGGATGACACAGAGGGTGAGATTTGTC 10581 37 100.0 36 ..................................... CAACCAAGGGAAAGCTGAAAACGCGCGTTATACCAA 10508 37 86.5 0 ............T..C........CGA.......... | ========== ====== ====== ====== ===================================== ============================================= ================== 9 37 97.9 38 GTTTCAGTCCCCGTGAGGGGTAATAAGGTTTGGAAAC # Left flank : TCGTGTGGGTTGAGTCGAAGAATGATTCAATATTTTATGTGATATCATCCCCTTTTGGGGAAAATTACTGATGGGCAGAAGTAAATGCTCTTGTGGCGATCTCTGAGTTTAGCAGCTCGTGATTTACAAAATTGCTAAT # Right flank : TGCTCGGTGCTGAAACTATTACAGAGCAAGCTTCCTGGGAAGCTATTTGACGAACCTCAAAAACAGGTCGATTTCAGCCGCTATTATTGCGACTAATTCTCAACTTCCTTAATTGTTGAAACGCTACACTTATTATTTTGTCAAGGTTCTGGCGATTTTGGCAAACCTCCTAGGGTTTTTAACCCCGCTTCGACTTGCCAAACATCAAGCTGATTACACAATCATAAGATGAATATCCATCCATTGTCGAGTTTTTTTACACTTTGGATCAATCTGTAACCCCGTCTTCTTGCTCAATCACACTTAGCAGCTTTTCTTCCACATCAGTTAAATACGGTCGCTTCAATTCTCCCAGATATCTCAACATAGCACGGGCAGCATCTTCTAAATTCTCGTTTTCCCGAACCCTTGTAATGCGATCGCAAATCTCCTGCATCTGCTGGCATTCAACATCCGAATAATTGAGCGGTTTCAGGTGATCAATTCTCACTGTGTATTCT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCCGTGAGGGGTAATAAGGTTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 5410-4636 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRV010000159.1 Nostoc sp. FACHB-152 contig159, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 5409 37 100.0 32 ..................................... ACTTCTGGTGCTTCTGTTGCTGCTGCTGGTGC 5340 37 100.0 40 ..................................... TTAAGCTTTTTATTCCTAGTTACAAAGCCCTGGCTATTTA 5263 37 100.0 42 ..................................... TTCGGTGGTGCTGCTCTTATTTTTAAGAGATTTATCTACAGC 5184 37 100.0 35 ..................................... GAGTTTTAGGTTTACCAAATTCAACGAGCAATGGT 5112 37 100.0 41 ..................................... ACATTATCCCCGTTGAATAGTTCACCGTAGTAGCTTATTTC 5034 37 100.0 39 ..................................... AACGGCTTGACCTTTGGAGTATTCAGGCGGACAAATCCA 4958 37 100.0 35 ..................................... GCCGTGACTGGAAAGACCCGGATTGGCGATATGAT 4886 37 100.0 32 ..................................... ATTGAGACTAAGGGTTATGAGCCTAATGAAAT 4817 37 100.0 37 ..................................... ATTTAGCTAACAAATGGGGGCTTAAATCAAAGCTTCC 4743 37 100.0 34 ..................................... CTACTTTAATTACTCCAAGCATTAAGCCCGATGG 4672 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 11 37 100.0 37 GTTGAAATTTCAAATAATCCCTATCAGGGATTGAAAC # Left flank : CGAACTCTAGCTAGTGCCACTGCCAAACTCAACCTCTGCTTCATCAGGCTCATGATTAAGAGGCTTGCAGGTTCTTCCTAAGATGTCAAATGGGTTCTATAAAAA # Right flank : ATATGTATAGTTCAGATTTGCGTCTTTGCGCCTTTGCGCGAGTCTAAATTCATCCTCTTAATCAGCAACGCCTTTAAATTAAATTCATCTGACACTACTTTTCCAGTGCTACAGCACCCACGCCATCCCTAATTAGATGACCATCTTCCATATAAATAATTCGGTCAGCAATATCTAAAATCCGGTTGTCGTGAGTAACTAGCAAAATTGTACAACCTTGCTCTTTGGCTAGTTTTTGCATTAATTCCACAACATCACGCCCAGATTGTTTATCGAGGGCGGCTGTAGGTTCGTCTGCTAAGACTATTTTAGGCTGACTTACCAATGCACGTGCGATCGCTACCCGTTGTTTTTGTCCTCCCGATAAGCTATCTGGATAGTAATTCAGCCGATGTTCTAAACCAACTGCTGCTAACATTGCTTGAGAACGCGCCAGCATTTCTTGAGGTAGAATTTTTGGTTGCACTTCCAAACCCATACGCACATTCTGGATAGCTGTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCAAATAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA //