Array 1 677-1784 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRGL01000085.1 Pseudomonas aeruginosa isolate 41, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 677 28 100.0 32 ............................ GTACCGCTCAGCGGCGAACCGATAGGCACCGG 737 28 100.0 32 ............................ GACTTCTGGCTGTTTTCCATGCGCACCAGCGG 797 28 100.0 32 ............................ TTCCAGGCCAGTTCCACCACCGGTACCACCGC 857 28 100.0 32 ............................ CGTTCCAGGCGTGCCGCCACCACCATCGCCAC 917 28 100.0 32 ............................ TCGATCAGCGCCGCAGGAAGCCCAGGACCACC 977 28 100.0 32 ............................ AATTTCGAACAGCCGACTGATGCCATCATGGC 1037 28 100.0 32 ............................ TGGCGCGAAGCCGAGCAGCAATGCCGCGACGG 1097 28 100.0 32 ............................ GGCGTATCCCGATTATCGGTTGAGGTGATGTA 1157 28 100.0 32 ............................ AGGCCGGCGCCGATCTGCCCGCGACGAGGTAC 1217 28 100.0 32 ............................ TCCACCGGGTTTTTGTCAGTCCATCCGGCCGC 1277 28 100.0 32 ............................ TGTTCCGCCAAGCGCTACCGGCACCGTGTCGC 1337 28 100.0 32 ............................ TGGGTGGCGTGCCTGCTCAGTGGCTCCAGGTC 1397 28 100.0 32 ............................ TGGTAGACGGGATATGGATCGGCGAAGTCCTC 1457 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 1517 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 1577 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 1637 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 1697 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 1757 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 19 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTAAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 262-2031 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRGL01000092.1 Pseudomonas aeruginosa isolate 41, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 262 28 100.0 32 ............................ ATTCGAAGAGCGGACGTCCGGCGACTTCTGCC 322 28 100.0 32 ............................ CGGAAAACTCGCCGGCCAGCGTGTTCTTCAGG 382 28 100.0 32 ............................ TGGACGAACCGCAGCAGCGGTACGACGTTGTT 442 28 100.0 32 ............................ TTGATAGGCTCGTACTCAGGCCCGGAAAACTC 502 28 100.0 32 ............................ AAGGCCCTGGCCTATATCGCGGGCGGCCTGAC 562 28 100.0 32 ............................ AGTCGCTCCGCTGGGACCTGGAACAGGACATT 622 28 100.0 32 ............................ TGTATCCAGAAGGGGGCCGAGGTGATGTTCAA 682 28 100.0 32 ............................ TGGGCGACGTGGTCAAGCAGCGAAGAGGCAGA 742 28 100.0 32 ............................ AAACCGGGGGCGCGGGGAGCTTGTCCGGCTCG 802 28 100.0 32 ............................ ACGCTGAGCTGTAGAACCGGCTCGTTGCGACC 862 28 100.0 32 ............................ GCATCATGTACGGCAGCGAGATGCCGTCCGTG 922 28 100.0 32 ............................ TGGATGGTGATGTAGTAGGTGTCGCCGCCGAT 982 28 100.0 32 ............................ AGTGGGTCAACTTCACGCCAGCACCGTCGCTC 1042 28 100.0 32 ............................ TTCGAGCCGAGCGGAAGGTCGCTGGTGTCGTA 1102 28 100.0 32 ............................ ACAGGGTGTTGTCGTTACTGCGCCAGGTTGGA 1162 28 100.0 32 ............................ TGCGTAACCAAGTGCATTTCATGGCCCTGATG 1222 28 100.0 33 ............................ CAGGAGCTGCTTCCGCCGCAGCTTGCTGCTGTT 1283 28 100.0 32 ............................ GTGGGGGCCATGCGGGGTGAGAGCCACTCCAG 1343 28 100.0 32 ............................ TTCGTCGTCGTTATCACGCCGCCGGCCGCGCG 1403 28 100.0 32 ............................ TTGAACCCCAGGTCGTTCTTCGCCAGCGCATA 1463 28 100.0 32 ............................ CAGTCGATCAGCCCAGCCAGCTTGGCGTCGTT 1523 28 100.0 32 ............................ ATGCAGATCAAGCCGGAGGACTACCTCAAGAC 1583 28 100.0 32 ............................ TGATTGGTACCCTGATTACTGGTTACCTGATT 1643 28 100.0 32 ............................ TACGTGCGGTTCTGCGCCGCGCCGGATGACGA 1703 28 100.0 33 ............................ CTGTAAGGTTCGACCCATCCCCTCTGGCCCGGA 1764 28 100.0 32 ............................ TTGCAGTTCGGGTCTTTCGGGCCTGGCATGTC 1824 28 100.0 32 ............................ ATCCGGTACGTCGTTTCGACGAGCAACGTTGC 1884 28 100.0 32 ............................ ATGTAGGCCGACTGCATGTTGGTCTGGTAGAT 1944 28 100.0 32 ............................ TCCGGCACCGTTCATCTCCTCCTCGCTCCAGA 2004 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 30 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : TGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAGAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTAG # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGGTCGCTGCCGTCTAGGCAGAACCACCCTCTCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTTGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 11830-10906 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRGL01000092.1 Pseudomonas aeruginosa isolate 41, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 11829 28 100.0 32 ............................ AGGTCCTGGGGCTTCTGCAAGTTGACGTGTGT 11769 28 100.0 32 ............................ TCGGCCAACAGCCTCCACAAGGGAGGGAGGGG 11709 28 100.0 32 ............................ ACAACGCCTTCGAAGACCTGGGCGGCTTCGTA 11649 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 11589 28 100.0 32 ............................ TGTCCGGTCCCGGAAAAGACCAACGCGGGAGT 11529 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 11469 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 11413 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 11353 28 100.0 32 ............................ TCTGTCACCTCCTGGGAGGCGGCCTCGGCCTG 11293 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 11233 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 11173 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 11113 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 11053 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 10993 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 10933 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 16 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATAAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //