Array 1 124540-122926 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYKJ01000004.1 Salmonella enterica strain BCW_5109 NODE_4_length_343303_cov_2.7596, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 124539 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 124478 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 124417 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 124356 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 124295 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 124234 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 124173 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 124112 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 124051 29 100.0 32 ............................. CGCGAGCAATCCCATCTGACGTTCCGGAGACA 123990 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 123929 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 123868 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 123807 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 123746 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 123685 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 123624 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 123563 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 123502 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 123441 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 123380 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 123319 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 123258 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 123197 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 123136 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 123075 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 123014 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 122953 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //