Array 1 901165-899091 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045430.1 Pseudoalteromonas rubra strain S4059 chromosome 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 901164 32 100.0 34 ................................ GCCGATGATGTCTGTCAGGGATTTGTCTGTGGTA 901098 32 100.0 34 ................................ ACGACAAAACAGGATAAACCAGCCTGACTCGGCG 901032 32 100.0 34 ................................ TTCGATTTTCTGTGGCACAGAGCGGTATTCAGCC 900966 32 100.0 34 ................................ TGCCAAAATTCAACGGCCGTGATATCCGCTCTAT 900900 32 100.0 33 ................................ AGAAATCTGGGATAGAGCCACAGGGCGCGGGCT 900835 32 100.0 33 ................................ CATTACACTGCGATTCAGCGCATCGGCTATCAC 900770 32 100.0 35 ................................ GCGACTGATCGTTGTATAGTCCGGTGCCACCAGTG 900703 32 100.0 34 ................................ GTTGTTGTGTGACCCCGGGTCTTAATGACTTTGC 900637 32 100.0 37 ................................ AGCACAGACTCAGCACTGATCCCAATGCCGTCAGAAA 900568 32 100.0 34 ................................ GGCGCAATCAAAGCAGCCTGCGCCTTCACCACCT 900502 32 100.0 34 ................................ ATCAAATGGCTGTAGAGGTGGAGGAAGGCCACAA 900436 32 100.0 34 ................................ GCCTATCCAAAATAACAAATGAAATACACCTGCT 900370 32 100.0 35 ................................ GAGTAGTGAGAAAGAGTCCACCAGCCTATTAAATA 900303 32 100.0 33 ................................ ACCTCAACCGGGTTGAATGAACCAATGATCAGG 900238 32 100.0 33 ................................ CAGTTTACCAGTCGCCCGAGCGAGGTGTTGAGC 900173 32 100.0 36 ................................ CCCCCGGATGGCGGCCCATAGTGATAAACCCTGAAC 900105 32 100.0 33 ................................ TCAAACCCCGCCAAATCGGTGCAACATTTTATT 900040 32 100.0 34 ................................ CAAAAACTACAACACATTGTTTATTAGTCACTTT 899974 32 100.0 34 ................................ AGCGGTGGGCCACACAGTGATGGCTCTGCCACAG 899908 32 96.9 33 ............G................... CTGCTCTACCGCCTCAATTTTGCCACTGAATCG 899843 32 100.0 33 ................................ AGGGTGTTTCCGGCAATGCCGTTGGCCGTTACC 899778 32 100.0 33 ................................ AGCAATTGGCAACAGTGATGAGCAAACAAACAG 899713 32 100.0 33 ................................ CTGCTGTTGAGTAAAATTTCAATTTGTTTAAAA 899648 32 96.9 34 ...............A................ TGGCAATGGTTTGAAACGCCTCAGTCAGCACTTC 899582 32 100.0 33 ................................ CATATGGACAGATTTCTTTACTAGCCCATCATG 899517 32 100.0 35 ................................ AATGGGCCGCTGGTCGCTGTTGGCCTGCGGCATAT 899450 32 100.0 34 ................................ TAATCCTCCGAATAAAATTATACAAATATTACCT 899384 32 100.0 33 ................................ CTCATCGGTCTCGCCGGGGTTGGGTTTGTTTTC 899319 32 100.0 33 ................................ CGTTACGACCCAGCGAATTTTAAAACCGCGCAT 899254 32 100.0 33 ................................ ACCAGTAGGAACCAGTTCGATATTCCCACGGGA 899189 32 100.0 35 ................................ CACCCCTGAGCACCGATTGCCGTAGTTCAGGGGGG 899122 32 96.9 0 ..........G..................... | ========== ====== ====== ====== ================================ ===================================== ================== 32 32 99.7 34 GTCGCGTCCTACACGGGCGCGTGGATTGAAAC # Left flank : GATATACACTATGATGGTATTGGTGACTTATGATGTTTCTTTTGAGAGCGAAGATGGACAAAAACGCTTACGTAATCTTGCCAAGGTCTGCCTGGATCATGGAGTGCGTGTACAGTACTCAGTATTTGAGTGTGAAGTAGACCCGGCACAGTGGGTGAGTTTTAAGGCTAAACTATTAAAAATCTATGACCCACAAGTCGACAGCCTGAGATTCTATAAGTTAGGTAAAAACTGGCACAATAAAGTGGAACATCATGGCGCCAAAGCAGCCATTGATATTTTTCGTGATCCACTCATTCTTTAATCCCCAATTTGATTACCTCAGCGCTAACCCCTGGTTCTCATAAAAACCCCGGGAGGTTAGCGCTTATGTATGTTCTTTAAAAATAAGGCTATTTTAAATTAGCGCTGGCTTGGCAGTGTGTTTGACCATGATTTTTATCGAGGTTAGCGCAAATCAAGCATTTTTGCTAAGCTGGCTGGGCCTTGGCAACAAGGCA # Right flank : CGTTGTCTTGCTGGGGCCAAGTGGTGTGGGCAAAACCCATTTAGCAATCGGCTTGGGGTTAAAAGCGGTTCAAGCAAGGAAAAAAACGCGTTTTGTCACGGCCGCTGATCTAATGCTGCAACTATCAACAGCAAACAGGCAAAATAAGCTCAAACAATACTTATCTCGTTCAGTGATGGCACCAAGGTTGTTGATCATTGATGAGATAGGTTACTTACCATTCGGACGAGAAGAGGCGAACTTGTTCTTTAATGTGATCGTCAAGCGATATGAACATGGTAGCGTCATCTTAACGAGCAACTTATCGTTTGGGCAATGGCCCAGCGCGTTTGCTGGTGACGCCACATTAACAGCTGCAATGTTAGACCGCTTACTACACCATTCGCATGTATTGCAGTTGAGTGGAGAAAGCTACAGATTGAAAGACAAAAGCCGAGCAGGCGCAATACCTGAGTAAGCAAGTGGATCAATTTTAAAAGATCGAATTCAGGCTGAAAGTG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTACACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.10,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 912057-909916 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045430.1 Pseudoalteromonas rubra strain S4059 chromosome 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================================================================================== ================== 912056 32 100.0 34 ................................ TATTGCTTGCGGGATAGGCTTAAGCTCACCCTTT 911990 32 100.0 34 ................................ AGCGATCCCTTCCTGCTTTATGCCCAATTCACCT 911924 32 100.0 34 ................................ CCAGCCTCGTCAATGTGCTGGGATACGCCCTCAC 911858 32 100.0 35 ................................ AGGCTAATATATCCAATGGTCGAGACTGGTACGAG 911791 32 100.0 33 ................................ ATTTGTGGGGTGCTGATGGTGAGCAATGGGCTG 911726 32 100.0 33 ................................ TATCTATTGTTTTATCCATAATGCGCCACCTGC 911661 32 100.0 34 ................................ AATCAGCTCGGCATTTTTAAGCCTCAAGGCTCTA 911595 32 100.0 33 ................................ ACCCACTGGTGTAGCTGTGTCATTATCACGGCC 911530 32 100.0 33 ................................ AGCTACAGTTTGGAGCAAATGGTGTAACGAACA 911465 32 100.0 33 ................................ ATTAGCCGCAGCCGCTAATGAACTGTTGAATGA 911400 32 100.0 36 ................................ AAGAAAATGTTTGCTTACTAGCCGATGTAACACGTC 911332 32 100.0 33 ................................ GTCTGAGCATTAAAAACGCCGCATTACGCGGCG 911267 32 100.0 35 ................................ CCGCTTATATTCATTAAAGATGATAGGTTTATGCT 911200 32 100.0 33 ................................ AGAAAATGGCGTAATAGCGGAATCAAATGGGCA 911135 32 100.0 33 ................................ TCCCTTACAACCCTCTCTTGCATTTTGTTCATA 911070 32 100.0 35 ................................ TTAAAGAGTGAGAAATCATCAACCGTATCAAGAAA 911003 32 100.0 34 ................................ GTACTATTTTGCTAACATAGAGACTGGCGTTAAA 910937 32 100.0 34 ................................ TCAAACACCTCCTCAGATGGCGAGACCGTCAACG 910871 32 100.0 33 ................................ GTTGACCGTTGACTCAAGCTTTTTGACAGCCTC 910806 32 100.0 34 ................................ CCTTCATCAACAATGACCACATAAATTGGCACAG 910740 32 100.0 34 ................................ ACGACAAAACAGGATAAACCAGCCTGACTCGGCG 910674 32 100.0 35 ................................ ATGTGGATGTATGAGTTGTTTCTATGGGACATAAC 910607 32 100.0 34 ................................ TGGATATACGGCAGCCAGCCAGATACCAGAAACT 910541 32 100.0 33 ................................ GGCGAGCGTTACGATTGGAACACCGCCATATAC 910476 32 100.0 34 ................................ AGCGAACCAGGGTGCGCGGGTTATATGACCTATG 910410 32 100.0 33 ................................ GTCGTCCGCACCATAGTGTAAAGCATCAATCAG 910345 32 100.0 34 ................................ AGTTGCTGTCACACCTCGCCCTTTTTATACTCAA 910279 32 100.0 34 ................................ AGAGTACGCGCGGTTAATCATCTGGGTAACAGTG 910213 32 100.0 101 ................................ ACATCAGCTAAAATGATGCAGGGCAATTCATCCGTGAAGCATCGCTCCTTCGGTCATCCGTGACCTCACCTCAGCAAGCTGCGAAACGGTGTTTCGGTCTT 910080 32 87.5 101 .CTT..C......................... ACATCAGCTAAAATGATGCAGGGCAATTCATCCGTGAAGCATCGCTCCTTCGGTCATCCGTGACCTCACCTCAGCAAGCTGCGAAATGGTGTTTCGGTCTT 909947 32 84.4 0 .CTT..C..........T.............. | ========== ====== ====== ====== ================================ ===================================================================================================== ================== 31 32 99.1 38 GTCGCGTCCTTCACGGGCGCGTGGATTGAAAC # Left flank : TCATTATTCTCAGCATTTTTGTGTGGGGCGAAATCCGCTTTTTTAACGCCATCACCACCAACCCAAACAACACACTCAGCGCCGAACAAATGCAGGCCAAACTTGAGCTACTTGCAAACCAGCGCGCCACCTTCCGCGCATTCTGGTTCGACACGCTCCAGCTGATCATACTCAATGTGCTCTTTCCAACCCTCACCGCACTACTGGGCTATGTGTTTGGCACCAGCAGGAATAATGGGGCTTAGATAAGGCCCCTGTTCCTGGATAAATATGTTTATCAAAGTCTATATTTAATCGCTAAAAAATCTGAAAAAATGAAAGGGAGCGCTAACCCTTAGTTCTCATGAAAACCCCGGTAGGTTAGCGCTCTTATATGTTCTTTAAAAATAAGGATATTTTTACAGTTGATCTGCTTAGAACTGGATTGATTTGCAGCTTTTGCCGAGGTTAGCGCAAAACCGACAATTTTGCTAAGCTAGCTGTGCCTTATAGTTAAGGCA # Right flank : GCATCAACTGACTAGCGCGGAGCAATTCATCCATGAAGCATCGCTCCTTCGGTCATACATGACCTCACCTCAGAAAGCTGCGAAACGGAGTTTCGGTCTTGTCCTGTAAATTAAGGTAATCGGGATTTTGTCTCGGGTGATTCTGGACTGAGTGGCTGTTCAGCTAAGAACCACAAAGTTCCCAGCACCATTAGTAGCAGGCCAATAAGAAGCACGAATAAGCTCAGCAGCAGAGTAAAAATAGCCGCCAGAATCGGAGCACCAAACATAGCACTGAGCCACTCATATTGTGCCGTCAGGTAAACCCAACAGAATAACAGACACCAAGGGAGCAAAGTGCCGGGCTTCAACAAGCTTGTGACCCAGCTATCCAGTTTGTTTAGAAGCTTTTCAGGTGTTGCCGTCATTGTTTTAGATCACATTTTAATTTAAAAATTTACTCATTTAATTTACATTTTTAGCTGTATAGGCAAAATAAACAATAAATTAAGCGCTAAAAA # Questionable array : NO Score: 8.84 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.36, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTTCACGGGCGCGCGGATAGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.30,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //