Array 1 210004-209136 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031551.1 Pasteurella multocida strain PM8-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 210003 28 100.0 32 ............................ ATTAGCTGAAGACCGATTTATTAGAAATACAG 209943 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 209883 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 209823 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 209763 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 209703 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 209643 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 209583 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 209523 28 100.0 32 ............................ TTTAAGCTACGTTTATCCGCAAGATTCACTAC 209463 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 209403 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 209343 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 209283 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 209223 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 209163 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 15 28 99.5 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATACTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 767158-765811 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031551.1 Pasteurella multocida strain PM8-1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 767157 28 100.0 32 ............................ TTACCTTCCGTCATTGTTGAGCCTCCGCTAGT 767097 28 100.0 32 ............................ GCTACAAGCAAGCGACGATAGTTTTAATTTTA 767037 28 100.0 32 ............................ AAAGCCTATGAACACACAACCCTTGCACAAGT 766977 28 100.0 32 ............................ TTATCGCGGAAGTCAGTCGCCATAATGGCGTA 766917 28 100.0 32 ............................ ATTTCAGGTGAGCAGTGGATGATTATCCCGAG 766857 28 100.0 32 ............................ ATGTGTCTAAATCGGGGTAGATTTCCGCGAGC 766797 28 100.0 32 ............................ AAAATCTCTGGAATTTGTCGCATATTGCCTTT 766737 28 100.0 32 ............................ GTTGCAAGGTTGTAAGCTGTCCCCGCGTATTC 766677 28 100.0 32 ............................ ATGAACACATGATCACTTCTTGATGGATCAAA 766617 28 100.0 32 ............................ ATCAACGGGAGCGTAAGCGAAATGAAGAAACG 766557 28 100.0 32 ............................ AAGTGTCCGCGCTCACGTTAATCCCCGTAAGC 766497 28 100.0 32 ............................ AAGCCACAGCGCAGATGAGCACGTCATCACGT 766437 28 100.0 32 ............................ GATCCAAGCGTTACAAGTGAATCGTGGCTCTT 766377 28 100.0 32 ............................ AAGCACTATGCCGATAGCTCCCCAAAAGTCAT 766317 28 100.0 32 ............................ TAGCAATGGCAACAGCCTTTTTTATTATAGTT 766257 28 100.0 32 ............................ TCGCCTTTTGTCGCAAACCATTTGCGCACCCG 766197 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 766137 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 766077 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 766017 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 765957 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 765897 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 765837 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================ ================== 23 28 98.6 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //