Array 1 1189155-1188327 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051624.1 Streptococcus dysgalactiae subsp. equisimilis strain TPCH-A74 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1189154 36 100.0 30 .................................... ATACTACTCTTGCTGAAGTCCCAAAAAAAT 1189088 36 100.0 30 .................................... CACCAATGCTCAGTTTTAAACCAGTAGCGT 1189022 36 100.0 30 .................................... AAGTCGTGATGCTATTGATACAGCAGAGGT 1188956 36 100.0 30 .................................... TAGGCAATCGTCCGCAGATGCTTGTATTGA 1188890 36 100.0 30 .................................... AACTCAAAACTTAAAAACACGTAAAACTAT 1188824 36 100.0 30 .................................... AGTCTTTTTGGCAGCGGGTTTTACCTATCT 1188758 36 100.0 30 .................................... AACTGCCGCTGGGAAAACGACCGTTGGTGT 1188692 36 100.0 30 .................................... GTACGATAGGCAATTTCTAAAACGTGTAAA 1188626 36 100.0 30 .................................... GCAAAGATATGCGCAAGGTCGGACTATTGT 1188560 36 100.0 30 .................................... GGATAAGTAACTCCGCATAGCCACTAGCTG 1188494 36 100.0 30 .................................... TTTCAACGAGTGGTCTCCATTTTTCAACTT 1188428 36 100.0 30 .................................... CCTTTGGGACGTTATCCTCATCCAAGATGT 1188362 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 100.0 30 GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Left flank : AGAAACCTGAAGTGAAATCGATGATTGAAAAATTGGTTGCTACGATTACAGAACTGATTGTCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATCACAATCCTGGAATTGATTAAGTCCTTAGGAGTAAAAGTAGAAACGCAAAGTGATACTATTTTTGAAAAATGTCTAGAGATACTTCAAATTTTCAAATATCTCACTAAGAAAAAGTTGCTTATTTTTGTCAATAGTGGAGCTTTTCTAACAAAAGATGAAGTGGCTAATTTACAAGAGTATATATCATTGACAAATTTAACAGTTCTCTTTTTAGAAGCACGTGAACTATATGATTTTCCGCAGTATATTTTAGATGAAGACTATTTCTTAATAACTAAAAATATGGTATAATACTCTTAATAAATGCAGTAATACAGGGGCTTTTCAAGACTGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTTTAGACAAAAATAGTCTACGAG # Right flank : TAGTTAAGTGAATAGGTTACACTAAACTAGACAGAATTTATAAAGTGTTCTACACTAAAGAAAACAGGAGAACAGATATGTCTAGAAAAATACGTCGCCACTTCACCGATGATTTTAAGCAACAAATTGTTGACCTCCACAATGCTGGAATGAAACGAAGTGAGCTTATCAAAGAATATGAGTTAACGCCCTCAACCTTCGATAAGTGGGTCAGACAAGCCAAACTAACGGGTTCCTTCAAGTCTGTTGATAATATGACAGATGAACAACGGGAACTGATTCAACTCAGAAAACGCAATAAAGAACTCGAAATGCAATTAGATATCCTAAAGCAAGCGGCAGTGATTATGGCACGAAAAGACAAGTAATCACTGCAAACAAGGATAAATACAGCATTTCAGCCATGTGTCGTTGGTTGAACATTCCTCGTTCAAGTTATTACTACCAAGCTGTAGATCCTGTGTCAGAGGCTGAACTCGAGGATAAAATTACCTATATTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 1547245-1546355 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP051624.1 Streptococcus dysgalactiae subsp. equisimilis strain TPCH-A74 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1547244 32 100.0 35 ................................ AATACTTTGAGGGCAGAACAGGACTTAGAACTAGA 1547177 32 100.0 34 ................................ AGCCTTGCGACTCAGACACCGCTAGTCTAAATCG 1547111 32 100.0 33 ................................ CCATTGCTGAAGAAGTGTCGATATTTTCTTTTA 1547046 32 100.0 34 ................................ TTTGTCACTAGATTCTTTAAACTCCTTTATAAGA 1546980 32 100.0 34 ................................ AATCTCATTCATCTTTTTGGCATTGTTTTTTGCT 1546914 32 100.0 34 ................................ TTTTATAGCAAACTTTTTATTAGGTGTTAGAACA 1546848 32 100.0 33 ................................ CATCCATAAAGGCAAGGTTCGTGCTTCCAATGA 1546783 32 100.0 34 ................................ ACTTGGACGAGTACAGACCCCAACTCTTTATATG 1546717 32 100.0 34 ................................ GATAATCTAGGGGATTTGATGCCATGACGGAACT 1546651 32 100.0 34 ................................ TACCCTAACAGGTACACAACCAGTTACATTTACT 1546585 32 100.0 34 ................................ GCTATTCTTATCAAAATTTAAGTAATTTTGGTTA 1546519 32 100.0 33 ................................ ATCGCAATTGCATCAACTTGAATATCACTGTCA 1546454 32 100.0 36 ................................ TAACTCTGTCATTTCCCAATTTTTAGTGAGAATCAC 1546386 32 90.6 0 ............................C.TC | ========== ====== ====== ====== ================================ ==================================== ================== 14 32 99.3 34 GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT # Left flank : AAGGCCATACGAGGAGATTTAGAAAGCTATCCACCTTTTATGGTTTAGGAGATGTTATATGATGGTTTTAGTCACTTATGATGTAAATACTGAAACATCGGCGGGCAGAAAAAGATTGCGTCATGTTGCTAAACTCTGTGTGGACTATGGGCAACGTGTTCAAAATTCTGTTTTTGAATGTTCTGTGACACCCGCGGAATTTGTGGATATAAAGCACCGATTAACACAAATCATTGATGGGGAAACAGATAGTATTCGCTTTTATTTATTGGGTAAGAATTGGCAGAGGCGTGTGGAAACACTTGGTCGCTCAGACAGCTATGACCCAGATAAAGGTGTCTTATTATTGTAAAAATCTCTTGTGCGAACCTAGGTTTCACAGAAAACCCTAGCTTGCTCGCGCAAAAATAACTTAAAAAAGAAGCGAAATGGAGATAAAAAGGCTTAAAACACCTCTATGTCTTCCATCCGTTTCTCTATAAACTGTGTCATTTGGCGCT # Right flank : CTAGATTTTTGATGGATCTATTTTGAGTTTTTCTTCACTCATAAATTTCCATTTATTTTCTCCCCTCTCTTTCCCCCTCACATATGCTATAATAAGCTTAACAATGCATGGTAAAGGAGTTAGGATGGCTAAGGTTCGGTATGGGATTGTGTCGACGGCGCAGGTGGCCCCTCGTTTTATTGAGGGGGTGCGCTTGGCTGGCAATGGCGAGGTTGTGGCGGTGTCCAGTCGGTCACTTGATAAGGCAAAGGCTTTTGCGGCAGCGCATCAGTTGCCTAAGGCTTATGGTAGTCTTGATGACATGTTGTTGGATGCGTCGATTGATGCCATTTATGTAGCAAGTATCAATCAGGACCATTTTCCTGCGGCTAAGAAGGCTTTGCTGGCAGGCAAGCATGTTCTGGTGGAAAAACCGTTTACCTTGACATCTGCTCAGGCTGAAGAACTTTTTGCTTTAGCGCAAGAGCGCGGCTTGTTTTTGATGGAGGCTCAGAAGGCTG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACCCTTCGCGGGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //