Array 1 272753-272552 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGNA01000001.1 Enterococcus termitis strain 4C2_DIV0658 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ============================================= ================== 272752 38 100.0 42 ...................................... GCCTATATCCGTTCATCTGGCTATTATTTTGCAATCATAGAC 272672 38 100.0 45 ...................................... CATTGGTTTCTCAGCTTGTGAAATTAAAGCTCTACTCATTTATTG 272589 38 100.0 0 ...................................... | ========== ====== ====== ====== ====================================== ============================================= ================== 3 38 100.0 44 CTGTCTCTTATACACATCTAGATGTGTATAAGAGACAG # Left flank : AATAATTCAGCACCATACGCCTGCATCAATTTGCGGCGCTCAATACTCATCGTATCAGGCATAACAATCACAACTTTATATCCTTTAGCAGCACCAACCATTGCTAGTCCGATCCCTGTATTCCCGCTAGTCGGTTCTACAATGGTATCTCCAGCCTTAAGCAAGCCGCTTTTTTCTGCTTTTTCAATCATACTTAACGCAATTCGATCTTTTACACTGCCACCTGGGTTGAAAAATTCAAGCTTTACAAAAACATCTGCTGCTCCATCAGGGACAATACGTCCTAATTTTACAATTGGTGTCTTGCCAATCAATTCGGTAACTGAATTAAAAATTTGAGTCATTGATCATTCCTCCATCTTAATATTCGTGCAAGCAAAAACGTTCTTTTGTTTATAATAGCCTATATCCGTTCATCTGGCTATTATTTTGCAATCATAGACTGCTTACTTTCTAAAAAAAACAATGCTTCTTTATGATATAATTATATTGTAAAGGAG # Right flank : TTTTTTAACTCGTTTTTCATTTAAAAACAAGTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTCTCTTATACACATCTAGATGTGTATAAGAGACAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-13.50,-13.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 947464-945671 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGNA01000001.1 Enterococcus termitis strain 4C2_DIV0658 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ========================================================================== ================== 947463 34 100.0 35 .................................. AGTGTTGACTCTGTATCGAGGTTTTTGATTATCAT 947394 34 100.0 35 .................................. TTATATTGATGAACTTAATCAAGCTAAAAATGAAT 947325 34 100.0 33 .................................. CATTATTTCTGAAGCAGATGCAAACCAAAAAGC 947258 34 100.0 36 .................................. ATCAAGTATTTTATATGTGTAAGGATCATCCATTAT 947188 34 100.0 34 .................................. TCTAAAAACTTTATACAAAAAACCAGTGTAAGCC 947120 34 100.0 34 .................................. ATGTAAGGGCTGGTGGTATAGAAAAAGAATATTT 947052 34 100.0 36 .................................. ATCAAAATGGTATTGATGAAAACATGACAACTAAAG 946982 34 100.0 35 .................................. AGAAAGCACGGTTTATAAGAAACATGCAGAATTGG 946913 34 100.0 33 .................................. TTGCTGTGATTTCGATCATATCGGGTTGCTCAA 946846 34 100.0 35 .................................. AGCTAGTAAAGCAAAAGATGGTGCTGTTGGCTCTT 946777 34 100.0 35 .................................. ATATCAACTCTTTCAGTTGATCCTAAATCAAAAAA 946708 34 100.0 34 .................................. ATCTTACAACCTCCTTTCTCAACTTCTGATTCAA 946640 34 100.0 34 .................................. ATTTCTAATCGCAAAAATCGTACAGAATTACGTG 946572 34 100.0 35 .................................. GATAAAAGGTGAAGTCGAATGGCTAAAAGAGAATT 946503 34 100.0 34 .................................. AACCATTGGCACTGATAATGGTAATATAAGAGTT 946435 34 100.0 35 .................................. ACGTGAAACATTATTTTTTTACCCATGCACCTAGA 946366 34 100.0 35 .................................. ATTACCAGCGGTACTATAAACATGAGCGTTTAAAG 946297 34 100.0 34 .................................. ACCATTAAAGATTTTTACACTCAACCATATCCGG 946229 34 100.0 36 .................................. CGACTGTAGATATTCCATCAGTGACGTTGTTGTCTT 946159 34 100.0 35 .................................. GATGCGGGAGTATGCGGAAGCGTCCATATAATCTG 946090 34 100.0 35 .................................. CGAACTCTACACACTCGTATTTTACAAATGATAAT 946021 34 100.0 36 .................................. AAATTCGTCTAATTCATCAGAAGAAATTAATGAGGT 945951 34 100.0 34 .................................. CATCTTTTCGTTTAGCAGAATAATAGGCTTTCCT 945883 34 100.0 74 .................................. AATAAAGTCAGTAATGATAACTAATGTATCTGCAGTCTCACTCTAATCTCTGTCTCTTATACACATCTAGATGT 945775 34 82.4 34 ..A.A.ACAG........................ AATAAAGTCAGTAATGATAACTAATGTATCTGCA GAG [945767] 945704 34 73.5 0 ................A..CA.A.AA....GCG. | ========== ====== ====== ====== ================================== ========================================================================== ================== 26 34 98.3 36 GTCTCACTCTAATCTAGAGTGAGTGGATTGAAAT # Left flank : ATGGAGATGGCGGAGCTGATATTTTACCGTTATTCCGTTTAAACAAACGCCAAGGGAAAGCATTATTGAAAGAATTAGGCTCACCGACTGAATTATATACAAAAATTCCAACTGCCGATTTAGAAGACGATAAACCATTGGTAGCGGACGAAGTCGCACTTGGTGTAACGTATGATGATATTGATGACTATGTTGAAGGAAAAAACGTCTCTGAACAAGCAAAGGAAACAATTGAAGGCTGGTATAAAAAGACTCAGCATAAACGTCATATGCCAATTTCAATTTTTGATGATTTCTGGAAGTAAGTATTAAAAAAGAGAATGACTAGTTTGGTGCGAACCCTAAGTGCCCATAAAATTAATAGGAGATCCGCACCAATAAAAGAGAAAGAATGGGCGTGAAGAAGCCTGTTTTCTCATTTTATTTTAATGTTTGTGTAGTATTACGTGGAAAAATAGCTAATATGTAAGTTAATGATATGTATTTCTAGTTTTTTCACA # Right flank : AAATCAGAATAAATTAAAAAGGGCTAAACAATCACCCTTTTTTTTTATACTTATTTTTAATTTAAAATACCTTCATTTTGTTCAAATGATTAAAAAAAGTGTAAACTTAAACTAGTCATCTGCAATAATCGATGAACTACTCTACAATTAACGTAACTATAGCAAGAAAAAGGTGAATGAAAATATGAAAAAACTATTTAGGAAAAAAAGAAATATCGATAATGAGGAGTTTCTTTCATCTGAAGAAAAAGCACAAACGATAAATAATAATAACATTCGGATACCAGCAAATATCACTGGTTTATCTGATAAAGAAGTACAACAGCTTTATGCGGAAGGGAAATACAACAAAGAAGTTGAAGATTTATCTAGAACAACCAAACAAATTATTCTCGATAATTCATTGACCTTATTCAATTTTATCAACTTGTTTTTGGCGATTGCAGTGTTTGCTGTAGGTTATCCGAAGAATGCACTATTTTTTTGGATTATTATCATTA # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTAATCTAGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.76%AT] # Reference repeat match prediction: R [matched GTCTCACTCTAATCTAGAGTGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-4.30,-4.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [19-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 1160995-1160143 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGNA01000001.1 Enterococcus termitis strain 4C2_DIV0658 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1160994 33 100.0 36 ................................. TAGAATTATACTTTTTTTGATCAAATTCTGGTATAT 1160925 33 100.0 36 ................................. TATACCACCAGCCCTTACATGTATTTCGTTTTTAGC 1160856 33 100.0 34 ................................. GCTTTTGACGTGTCTTACACTACTCAAATGTTAG 1160789 33 100.0 36 ................................. TGGTACTGACATATTCGATAGAATTGTTGGGAATAT 1160720 33 100.0 33 ................................. TAACACTTCGGCGCGATCTTCACTATCTCCATT 1160654 33 100.0 36 ................................. ATTACAGCTTTACCATTTTGTTCTAGCTCTGTTTCT 1160585 33 100.0 36 ................................. ATCAATCGTGGAACCTGTATAATTAAATACATTTAT 1160516 33 100.0 36 ................................. AAAATAGTGATGGTTCTGTTTCTGCGACTATTTCAG 1160447 33 100.0 35 ................................. AAAGCATCTAAGATATCAGCGCTTGTTAAGTCAAT 1160379 33 100.0 36 ................................. AACCTCATCTTCAAGAATATCTTTCAACCTGACAGA 1160310 33 100.0 34 ................................. GGAATGGCTACGACTTGCAAACGGAATATCATAG 1160243 33 100.0 35 ................................. ACATATAAACGATAGTCACGCTCGAATTCCGCTTT 1160175 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 13 33 100.0 35 GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT # Left flank : ATGACGAACGCCCAGGCGGGGCAAAAAACAATGACGATCAGCGCAGTACACGCTGGTAAAATATTTGTTGATATTTTGGGAAATAATGATACGAAAGTAACATTAGACGAAACAGGTGCAGGAACATTTCCAGTAAACGGTGGTGAAATTTCTGTCTATGTAAATGAAGAGAGTGTTGAAAAATTGAGTAGGGGAATTGAAGGTCTGACTTAGTAAGGTGAATGATGAAAAGAAGTGCTTACCACTCGTGTTAAATGATATATAAAATAGAGCGTGACTTCCTTTGAAAGAATAATTATACTAAGTATAGTAAGAAAAAATTTAGGATACATGGAAATTTGGTGCGGACCTCTAGTGCCCATGGGATTACTAGGAGATCCGCACCAGAATTTAGCTGAAAATAGAGGGTGAATAGCTTTTTTTCTCATCTTTTTTTCATTTTTAGTTGGATTTAATATTTTAAAATAGCGAATTTGTAAGTTTTTTATTACTTTTCCGCT # Right flank : ATCCAGAATCCGTTTTGTTTCTTCGAACTTCTCATGTCTCACTCTTTACCGAGTGAGTTTTTTTATCCCTTTCGAATCAACAAAAACAATAAGTAAAGTTGAGTTGTCATCATAATCAACATCGTTCAAAAAGAAAATATTGTTCCGAGAATTCCATCATTATTAAAGAATTTTCCTGCTATATTTGGTATAATGTATAAGATTGAAAAAAGAGAGAGGACGTTGATGATGGCACAAGAAAACGCCTTGATCCAAGGTATGAACCCGAGACAAAAAGAAGCCGTTCTACATACAGAAGGGCCTTTATTAGTTATGGCGGGTGCAGGCAGCGGGAAGACAAGAGTATTAACACACCGTATTGCTTATTTAATTGAAGAAAAAGATGTGAATCCGTGGAATATTTTAGCGATCACATTTACCAATAAAGCCGCAAAAGAAATGAGAGAGCGGGTTGGGAAATTATTAGAGGTTGGCGGAAATGATGTTTGGGTTTCCACATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.64%AT] # Reference repeat match prediction: R [matched GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.90,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 1245799-1245362 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGNA01000001.1 Enterococcus termitis strain 4C2_DIV0658 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 1245798 33 100.0 33 ................................. CTCCTGTAAATACTCAGGTTTCTAACATTACTC 1245732 33 100.0 35 ................................. CTTTTTCCACATCCTGAGATGGAAATGCCATCCCG 1245664 33 100.0 35 ................................. AGTCACGTTTCTGGCTACTCCGTTTAGAATTCCAT 1245596 33 100.0 34 ................................. ACATTTGGAATGGTCAGGCGTGGGAGGAAATATT 1245529 33 100.0 35 ................................. AATGAGTTTAGAAGATATTTCTTTTATGAACGAAG 1245461 33 100.0 34 ................................. AAGGCTATTTCACTTATAACGTAACGGATAAAAT 1245394 33 84.8 0 .............C........CAA..C..... | ========== ====== ====== ====== ================================= =================================== ================== 7 33 97.8 34 GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTAGAGCTAGTGGATTGAAATGGTGGTAGCCCATCTATTAGCGAGAGCTGGGTCACC # Right flank : CATCAATATTGCTGCACACAACTGTATGATAAAAACTAGATCTGCTTTAAAAATAACTCATTTTCATCATCAAAAAAGTAAAATCAAACCATTTATTTCAATACTTATCCCTCCTTGCTGTGAGAAATCAAACTACTTAGTATGCAAAGCTGAAAATTATGATATAATTATAGTGATATCGGTGTAATGAACACCCAAACGAAGAGCAATCAGCTTTTAAAAGCGATTTTTCGTACTAGGGAAAGTTGGGGGACTATGGCAATTCCAAAAGAAGGTGAATTTGTAACGATTCAAAGTTACAAACACGATGGGCATTTGCATCGAACATGGCGAGATACTATGGTATTAAAAACAAGCGAGTATTCTTTGATTGGTGTCAACGATCATACTTTGGTGACAGAGTCTGATGGTAGACGCTGGGTTACTCGGGAACCAGCTATCGTTTATTTTCATAAAAAATACTGGTTCAACATAATAGCGATGATTAGAGAAAAGGGGGT # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: R [matched GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 1247948-1247779 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGNA01000001.1 Enterococcus termitis strain 4C2_DIV0658 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1247947 33 100.0 34 ................................. TGTTTCCTCTGGTGATACACCACTAGCTTTATCA 1247880 33 100.0 36 ................................. CGTTGCATGGTCGTGGATTGATAATGGTGTTATAAA 1247811 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 3 33 100.0 36 GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Left flank : AACGTTTCGAGTTTCTACAAAAAATGCGCGTGAAAGAAGAGCAGCAATTATCGCTTGATTTTGAAGAACCATTATTAGTTGCTGAAGAAAATCCGGAAATTTTTGAAAAATACTCTCAAGTAGTTTGGCAAAAGCGATCTTTAGGAGAGGTAATCCATATTTTCAGCCACCTAAAATGGCATATTCTTGTCTTTTATGGCCGACAAACAGGATTAACGCCTTTGGATGAAAAACAAGAGTGGGTAACAAAAGACGAATTTTCAAGCTATGTTTTTCCAAAACCTCAGCAAAAAATGCTAGAACTATATAAAAAAGAATTTGAAATACAAGAATAATCTTTGGTGCGAACCCCAAGTGATCATAAAATCCCTAGGAGATCCGCACCAGAATTTTGCTGAAATTAGAGGGGAAAGGGCTCTTTTTCTCATTTTAATTTAATGTTATACTAGTTTTAGTGTTGAAATTGTGGAGATATGTCGTGTATTTTTATCAATTTCACA # Right flank : TATGACATCAACGTACAAGAAGAACGTGAGTACAGTCTAGCTCTGTTTAGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: R [matched GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.30,-8.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 88151-88321 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGNA01000004.1 Enterococcus termitis strain 4C2_DIV0658 scaffold00004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 88151 33 100.0 36 ................................. TTTAAGGTAATTTATCATCTTTTTAAAATTACCCTC 88220 33 100.0 36 ................................. CCTTTTTGGGAGGGGATGTTCTTGAATTAGATACTG 88289 33 57.6 0 ...................NNNNNNNNNNNNNN | ========== ====== ====== ====== ================================= ==================================== ================== 3 33 85.9 36 GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Left flank : TTTAGATGGTTATCCACCGTTTTTATGGAAGTAGGTGAGATGTGTGTTAGTATTGATCACATATGATGTTGCAACAAGCTCGAAAAATGGCCCCCGTCGTTTAAGAAAAGTTGCCAAGAAGTGTCAAGATTATGGACAGCGCGTCCAAAACTCTGTTTTTGAATGTGTTGTTGATGCGACAGAGCTAACAAAGTTAAAGAAAGAACTGATTGATTTAATTGATGAAGAATTAGATAGTTTGCGTATTTATCGATTAGGAAATAATTATCAAAATAAAGTGGAGCATATTGGTGCAAAAGAAAGCTTTGACGTAACAGCTCCTTTGATCTTCTAAAAAAATTGGTGCGAACCCCAAGTGCACATGAAAATGCTAGAGGACCCGCACCAAATTCAGGGCATCTTTTGTTGAAAAAACAGCCTTTTTCTCATCTGAATTTAATTTTATGACGATTTTTTTTAAAAGATACGTGAAAATGACATGTATTTGTGTCATTTTCACA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTCATGTATTAGTCCCGTCTAGCTCTGTTTAGAGCTAGTGGATTGAAATAACAAGGACCGCCAAATAAAAATTGATTTGATTTAAGTCTAGCTCTGTTTAGAGCTAGTGGATTGAAATGATTATAATGATTATCGTGATCGTGGCATGGCCTAGTCTAGCTCTGTTTAGAGCTAGTGGATTGAAATTTTGGACAAGGTACTGA # Questionable array : NO Score: 7.97 # Score Detail : 1:0, 2:3, 3:3, 4:0.30, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: F [matched GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 88634-88870 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGNA01000004.1 Enterococcus termitis strain 4C2_DIV0658 scaffold00004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 88634 33 100.0 36 ................................. AACAAGGACCGCCAAATAAAAATTGATTTGATTTAA 88703 33 100.0 35 ................................. GATTATAATGATTATCGTGATCGTGGCATGGCCTA 88771 33 100.0 34 ................................. TTTGGACAAGGTACTGAAGGAGATGCAGCAAGAA 88838 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 4 33 100.0 35 GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Left flank : TTTGTGTCATTTTCACAGTCTAGCTCTGTTTAGAGCTAGTGGATTGAAATTTTAAGGTAATTTATCATCTTTTTAAAATTACCCTCGTCTAGCTCTGTTTAGAGCTAGTGGATTGAAATCCTTTTTGGGAGGGGATGTTCTTGAATTAGATACTGGTCTAGCTCTGTTTAGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTCATGTATTAGTCCC # Right flank : TAAGAAAGCGAAGAACTCTAAAGGAGAAGAGCTAGACTATATAAAATCACTCAGAAATATAACCAAACAAAATATCCCCCCACCCCAAGCTAGCGACAGCCTATATTACACAATAAAACTATCCAACTTATAATATCATTCATCCTATAAAAATGAAGATTTTTTCATCATGATTTGCTTGACCAAGCTAAAAATAGTGGGTACGCTATGTAAAAAGGCGGTGGAACAATGAATAAAGTAGTTATTTTGCTAGTGGAAGACGAAGCGAGTCTTGCTAATTTTATTTCGGAAGAACTTAAGTTTGAAGGGTATGAAGTGCTTTATGCCCCTGATGGTGAGCTGGCGTTGGAACTATATAAACAACATCAAGAAGCGATTACGCTACTCTTGTTAGATTGGATGTTGCCAAAATATGATGGCATCACAGTAGCAAGAAGGATTCGCCGTAATAGCCAAGTTCCGATCATCATGATGACTGCTAGAGATCAGTTGGCTGATAA # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.76%AT] # Reference repeat match prediction: F [matched GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.10,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 20373-20556 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGNA01000006.1 Enterococcus termitis strain 4C2_DIV0658 scaffold00006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =============================================== ================== 20373 31 100.0 44 ............................... GAGACAGATTTTACAAGTTATCATTTTATACTATATTCATGTAC 20448 31 100.0 47 ............................... CGTAATGACATTGCTCTTTTGCCTTCCTTTTGCTGGAACAATTAAAC 20526 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =============================================== ================== 3 31 100.0 50 CTGTCTCTTATACACATCTAGATGTGTATAA # Left flank : ATTGCCTACCTCTCCTTTTACCTAGCATTTATTTCATTAGCTTTATCATCGTGGATGTTAGTTGTTTATACAGATACTATTATGTCTGTCTCTTATACACATCTAGATGTGTATAAGAGACAGCTATTATTGTTCTATAATGAAAATAGGAATACCAAAACAACCAGAAATGATTTTATTTACTAGGAGATCCTAAATGAAAAAAACACTCTTTTCACTTTTAAATTATCTATTTCTTTTATCCATACTTTATACACTTTATGGGACGCTCAGGAGTAGTCTGTTAGATATCTCAAATATTAACGACAAGATTTGGCCATTCTTACTTATTCTATTTTTTATTATTTGTATCGCGTTTATTCCAACCACCTCACGCTCTTACATACAGAAAAAGCTAAAACCATTGTTTAGTTTTTTTAAGAAAAATATAGGCATGATTACTAAATTACTTTTCGTAATAGGCTTTATTTTACAAGTTATCATTTTATACTATATTCATG # Right flank : AGAGACAGTGCCTTACTTTTGCTGGAACAATTAAACTCTTTCATGTATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATTGGTTGGGACGTAGACGGGATCTATTCTGGTGTAACTGAATTAACAAAGAATTCACCAGACTCTATTGCTAGTATTTACTTGTCAAAAAATCCAAATAATAGCTTATTTTTCTTTTTAATGTATTTTATAAGCCAAATCGGGAATTTCATCCATCACTCGTTAGGAAATTCTTGGATGTTTTGGCAACTAACCAATACAATTTTTATGGATATCGGCTTTATTTTTATCTTTCTGGC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTCTCTTATACACATCTAGATGTGTATAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.74%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 2 228670-228097 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGNA01000006.1 Enterococcus termitis strain 4C2_DIV0658 scaffold00006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 228669 33 100.0 33 ................................. ATCCACCGCATATGATTTATCACCATCCTCTAA 228603 33 100.0 35 ................................. ATAAAAGTACCAATCTTTTAATTGCTGTGTTACTC 228535 33 100.0 36 ................................. AAATAAGCGTTTAACCTAACCATCTTAGGGTAAAAA 228466 33 100.0 35 ................................. CCCTTAAACATTTGAATATCATTAACTGTTGCACC 228398 33 100.0 36 ................................. ATTGATACTTAACAATAATTTTTTGAGCCACTCCGT 228329 33 100.0 33 ................................. CACCAATAGCATCTTTCGCTTGATTCCATTTGT 228263 33 100.0 33 ................................. AAAGCTGCAAATATCTTTTCGGACTTTCCCAAA 228197 33 100.0 34 ................................. CTAGAGTTTGGGGTTACGGTTGCTATAAACCTTG 228130 33 81.8 0 ......................ACA.C.A...A | C [228104] ========== ====== ====== ====== ================================= ==================================== ================== 9 33 98.0 34 GTCTCACTCTGTTTAGAGTGAGTGGATTGAAAT # Left flank : GGTATTTGGATTTATTTTGCAATCAAGCGGCATAGTTTCTTAAACTCTAACAAAAAGCATCTTAAGAATAATTTACATGAATACCCGGAATATATGGATTTATTAAAACAATATCCAGAGTAACTTTCAGGTAGTAGTTATTTTTTTATCAGAGGTTGTTTATTTGAAATTTAAGGGGCTGAGATGTAACTCGAAAAGTTATATCTTAGCTCCGTTTTTTTGTATAATGGATTTTTATTTACTAAAAGTAATTAATTTTTTCTGAAAATGGTTGAATTATGCTATTATTACAGTTGAACTTATTCAGGAATATTGAGGGAGCGGTAACAGAAAATAATACGGTGCGAACCCTAAGAGCACATGAAATCACTGAGGGACTCGCACCAGTTTTTGATGAATAAAAACATACTTTTAATGACTTTTATCATTATTTTCACATTTTATGACGTTATTTTAGGTGGGATTATTGTATTTTAGTAGAGGAATACTGTATTTTCACA # Right flank : CTTCCCATAATATCCAGTAATAATCGTTTTTCACCTAATTATTATGATCAATTTGTAAATAAACATAGACGTATCTTATATTTTTCGATAATATAAAACTATCTATCTTTGTATAGATAGTTTTTTTATCAAAGGAGAGCGAATAATGAAAAAATCAGTAAAATCGTCAATGGTTGTATTGGCGCTAAGCTTGGGTTTGTCGATTGGTCCATCTGAAGAAGTAGAAGCAATGTATGAGTCGCCATATACTTATTTTAATGAATATGGAATAAGGCAAGAATTGTTTTCAGATATAGATGCTCTTCATTCTGATCGTTACAGAGCTGAAATGGATCAATTGATGGAGAATCATGAGAAGGGATTGCTTTCTGATGATGAATTTGATCGTTTATCGAAAACGTTATTTGACAATTATGGTTTATTAAAAAAAATAGATATCAAAAACATAACGCACATTGATGCAGATTTTGAAGAATATTCTTCTCTTACCGGTCTTGAAG # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTGTTTAGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: R [matched GTCTCACTCTATTTAGAGTGAGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-3.60,-3.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //