Array 1 424926-426540 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034237.1 Pectobacterium carotovorum subsp. carotovorum strain JR1.1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 424926 29 100.0 32 ............................. TCGGCTGATGGTAGGATTTATCTGAATGTGAT 424987 29 100.0 32 ............................. TCAGGCAGGTGGTTACACATGTTCGCCCAGCT 425048 29 100.0 32 ............................. TACGACCAGTCAGAACTGGAGGCTGCGATATT 425109 29 100.0 32 ............................. CCGATATCAATATTCATTGGTTGAACGCCAAA 425170 29 100.0 32 ............................. TAGATATTCCTCGCATTTTCGGAAATCTACAT 425231 29 100.0 32 ............................. TGTTATTTTTTCCATCACCTGTCGAATCCACA 425292 29 100.0 32 ............................. CAGGCGCAGAGGGCAGCGCAGACGGCGCACCT 425353 29 100.0 32 ............................. AGAACAATGTGCCAGAAAAGCCGGATGATTAC 425414 29 100.0 32 ............................. CTCAGCGTGAATATGAAAAGGCTAGCCGTGAT 425475 29 100.0 32 ............................. GCAAATTGTCTATGCAACAGTTTGCTGACGCT 425536 29 100.0 32 ............................. GGGCTTATGCAGGAATTGTCGATTTGCGCACC 425597 29 100.0 32 ............................. GCAGATAACGCCAGGGTGTTTGATTTCGAACT 425658 29 100.0 32 ............................. TCGCTTGCGTTGGGCTGGGCTGGTAATTCAGG 425719 29 100.0 32 ............................. GCATGAAAGAGAAAATATGCTGGCAGTTGCAG 425780 29 100.0 32 ............................. CAGCCATTCCGAAACCTGCCTGTGATTGTGCC 425841 29 100.0 32 ............................. CAGCTATATAAAAACCTTACGGCAGATCAGGA 425902 29 100.0 32 ............................. ATTACTCGCAGATAAACACTGCATGCTATATG 425963 29 100.0 32 ............................. TGGCTGACCTTGAAAATGGCTATTTGCGTTTA 426024 29 100.0 32 ............................. CCCCAGCGGTTAGGCTAGGGCTTGAATGTGTA 426085 29 100.0 32 ............................. CGCTGAAAACGCCGGGGAAATGGTTCAAATTC 426146 29 100.0 32 ............................. GCGCAGGCATGGCGCGAATGGTCATGGCTATC 426207 29 96.6 32 .............T............... GCAACTCATCTGGCCTTCTTAAAGGCGCTACT 426268 29 96.6 32 .............T............... CCTAAAAAATTACAAACCAGAACGGCAACAGT 426329 29 100.0 32 ............................. GGCCATAATCATCATGCAAAACATTGTTTTGA 426390 29 96.6 32 .........T................... AACGCATCGCGGATCACCTGACGTTTCACGCT 426451 29 96.6 32 ...........................T. GGCAAGATGATTGACGACTGCCTGCGTGAAGG 426512 29 93.1 0 .............T..............C | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGATGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTACCGCCGGACGATGCACAGCCGCCTGCAATTCCAGAACCGAAACCGTTTGGTGATAGCGGTCACCGGGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGTTTGCGCGGCAGGCTGGCGGTGTGGCTATTGGAAGTCCGCGCGGGTGTGTATGTCGGTGATACCTCACAGCGGGTGAGAGAAATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTGATGGCGTGGGCGACGAATACGGAATCCGGCTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAATATGGAAAAATCGGTAGAATTTTTTACGCCGAAAAAAGTGTTATAAAACAGATCTCTACTTTTAGA # Right flank : CTAATCCGTCGAAATCGCTAAAGAATTAGCTGTTCTGGCTCACAGTTGTACAGCTTAGCTAGCTTTTTTCGGGTGCGTTTCTGCGGTCTTGAATCTGGGGATTCAAGCTGAGAGACGGCGGCTTGGGTAATGCCAAGTGCGGTTGCAACCTCTTGCTGTGAGAGGCCCCTAAAAATTCGCCAGGCTGCCTGTAAGCTGATGTCTTGATCAATGTGAATACTCACTACTTCATGAGGAATGGAGACATCATCCTCTTCGCTATGAGCGTAGGGAATGCTCTCATAAAGGGCGGGTTCATCAGCGTTTGCGATAAGTTTCTGGTATAACTCATACGGAACAACAGCATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTGCGATGGGTAAAAATCAGTTGTGGTGTAAAGAGGGATACGCTTCCCTCCTCAATATGTCGTTGTGGTCCTTCGCTTGACTTCAAGTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 429304-429698 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034237.1 Pectobacterium carotovorum subsp. carotovorum strain JR1.1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 429304 29 100.0 32 ............................. TAATGGATCAGATTGGGCAAAACCAATTCGCA 429365 29 100.0 32 ............................. TACCGTTTCTTTCCAGCTCACACTTTTATTAC 429426 29 100.0 32 ............................. GGCGGCAGCGTGGTGACGCACAAAATCAAATA 429487 29 96.6 32 .............T............... AACACTTATTCTCCATTAGGTCGCGCCTATGA 429548 29 96.6 32 .............T............... ATTGACATGTTTCTGCCTCCTGATCTGCCGCG 429609 29 100.0 32 ............................. TTCAGAGATTGCCAATCAGATGCGCCGCCGAG 429670 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTCCTGCTAATTATTTACTGCGTTACTTCAAGACGATGGATATGCATTGATTACTTCCAATTTATGTCAATATACTTGTAATCATTAGATATAGTGGATGAAAAATATTGGCATTTACAGGTTATATCGATATTCGGTTGAGAAAGAATATTTTTAACAGGGAAATTTTTACCGAGAAATAGAAATAAAAGCGCAGTGGTATAGCTCTTGCAGCAGTGTGCAGCGTTTAATTCAGCAACTGAACGTTTTCCAGATGTATGAAATCAAACTGGCAGATCAGGGAAACGTGGTGATAGCGTGGGCGAAAAACACGGAATCTGGCTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGGAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTAATTTTAGA # Right flank : GGGCTTATACCCCTTATTGCATGTTGGTCTAAATATTCCCCGCACGGGGTCAAATCCCGCTTCTGGCTGGCGCGATGGGGGATTGCGTGTCAGTATTAAAGCACGCTATTTTTGCGCCCACCGTCACGGTGAGGCGCTATGCCAATGATTTTTGTCTTCCATACGTTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTCTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCTACCGAGCATGCAGAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAGGTGGGCAGCGGTGCCGTTCCTGCTGGTCAGACGACGCGGTATGATTTCACCCGCATTAGCCCTGCCGAACTGTATGACACGGTCGAAGGCCTTGTCAGCAGTGGGCGGTTGGGGCGTGAAGAAGGGTCCGCGCTGCTGGGTTTTGTCTCATCGCCGAGAGCCGAAGGGGGGAGTATTCCGCCTTCCAATGTGTTCCAGCCGAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3964898-3963487 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034237.1 Pectobacterium carotovorum subsp. carotovorum strain JR1.1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 3964897 28 100.0 32 ............................ ATCACCATGTTTCCGACGGGTCGTGTTTTTGT 3964837 28 100.0 32 ............................ CGTATTCTAATCCGCGTCTGCGGCGGATCTGG 3964777 28 100.0 32 ............................ TATCCAAAGTGGAGGAAAGCTAAGTGAATTTA 3964717 28 100.0 33 ............................ CGATTGAAAGTGTTCCGAGGGCTGCGTGACTGG 3964656 28 100.0 32 ............................ TGAGAATGCTCACGGCTGAGCGCAATAAATTT 3964596 28 100.0 32 ............................ AATCAGAGCAACGCTACTAACCTACAGATTTA 3964536 28 100.0 34 ............................ TTCGTGTTGCCGGGGATTCATCGGAAAGTTTGGG 3964474 28 100.0 32 ............................ AGCTAAAGACAACGCCAAGCGTCGTAAATATC 3964414 28 100.0 32 ............................ GAAAAAATGGCGGAAATGCAGGCCAAAAAAGC 3964354 28 100.0 32 ............................ ATCGGACTACTTGAGAAAGTCATCCGGTTGAA 3964294 28 100.0 32 ............................ AGGATAATCTGTTTTCATTGCGCTGTGATAAA 3964234 28 100.0 32 ............................ GTCTCGCGAGTACAGAACCACACCAACAATAA 3964174 28 96.4 32 ............G............... TGTTCGCTGTCGATGGAATAAATCTAAAATAA 3964114 28 96.4 32 ............G............... ATCAAATACCAGCGCGCTGGTCGCGTTATAAT 3964054 28 96.4 32 ............G............... AGTTGCCGGATGGTGAGGTGTATGTCGGCAGT 3963994 28 96.4 32 ............G............... AGAGTATCCGAATTGGTTAACGCTGCGAACGT 3963934 28 89.3 32 AC..........G............... AACACCATTTTCCAAAATCTTAAACTCATCCG 3963874 28 96.4 32 ............G............... TGATAAGCACCAGTTAATGTTTGTAACCAGCT 3963814 28 96.4 32 ............G............... AGTAGCTCTCCAGCCTGCGTAACAGGATAGTT 3963754 28 96.4 32 ............G............... TTGTTGAACAGCTCGCCCGACCAGAACGGGTA 3963694 28 96.4 32 ............G............... GCACGCACTGACGAGAAGAATGAAGCCGATAA 3963634 28 96.4 32 ............G............... TGCACAACAAACACCTTGCTGCGCGTGAAGCT 3963574 28 96.4 32 ...........G................ GTATGAAGCGACGTTCAAAGACATGCCTCATT 3963514 28 82.1 0 ...........C........T...TCC. | ========== ====== ====== ====== ============================ ================================== ================== 24 28 97.3 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCGTGACGGAGGTGCCGGTTCCCAGCATGACAACACTGGTATTGGCGATGGGGATATTCCAGTACAGGGACTGGTTTCCTTCTTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGTGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCAGGCTAACTATTTGATAAGAAAAAATATAATCTTCAGAAAACTAACGAAAATCAGACTATCACAAATATTCTGGAAAAATGGTGGCTGCAAAAAATATTACCCAGACGCAGACCCTTTTTATTTGGCCTATTTCACAGGATTAAAAATCAATAAGTTACCGCTGAGCTGAAAAAAAGGGTTTTTGTGGCTAAAACGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTGATCGGGCAACG # Right flank : CGGCCTCAAGCGCTATTGTCTGGCTATTATCGAAGTAGCTCTGCGCCAAGTGCTCAATGCGTTTACCCCGTTAAATAACGCATATTGATGGCCTTCTTTCGTAACGTTTTTAAGTAATGAGTTTCTTTTCGAGGGAATGAAAAATTACGGGTTGGGCATTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTGCCCTTACAGGGAAATAATGCGTTAATTTAAGTCAAATTCAAGGGAGTGAGTGACTGTGAAATACGATCCCGTTTTAAAAACGCTTGTAGATGATGACTATCGGTTAGAGGACCATCTTGATTTTAAAAAGCAGCATGCAGATATTAACTATCAGAAATTACATGCTCAACTAAATGAAATAAATAACGATAACATTCATGCCATATTGACTGTGCAGGAAGCGACGTATTTTTTAAAGACGTTATGCACACCAAATCCTAATGACTCCTGGAAAACGGCCATATTTGGCTGTACCGATCCTAC # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 3973823-3974870 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034237.1 Pectobacterium carotovorum subsp. carotovorum strain JR1.1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3973823 28 100.0 32 ............................ ACCTCGACGTGGAGAAACTCACCGCGCTACTG 3973883 28 100.0 32 ............................ AACTGACCACCAACGCCGACCGCCTGAGACGT 3973943 28 100.0 32 ............................ TGTACGCGCTTGCCCGTGAGCCAGTTAATAAG 3974003 28 100.0 32 ............................ TAAGGTCATCTGAAGGGGAAATGGTGGTTATT 3974063 28 100.0 33 ............................ CTGCCACAGCCCCATAACTCAGGGTGGGCCCAA 3974124 28 100.0 32 ............................ TCATGATGCAGGAGAAATAGAATGGCTGACAT 3974184 28 100.0 32 ............................ GTCGCTAGACGGTTTGTTTGATTGCTCAACTG 3974244 28 100.0 32 ............................ AACGACGATCTGAGAGCCAGGGTGCAGCATAG 3974304 28 100.0 32 ............................ GGGCGGCCCTTCAAGCGTAAGATATCGCCGGG 3974364 28 92.9 32 A..........C................ AAACGGTCAAAATGGTAACGGGCGTCAGACAA 3974424 28 92.9 32 A..........C................ TGATGGCGTGCTTACATGGGAACATGCTTTTT 3974484 28 92.9 32 A..........C................ CGCGCCGCAACGGCGACAAGCGAAACGAACCA 3974544 28 92.9 32 A..........C................ AGAGCAACTAAAGCCAGTCGTGACTTTTGCAC 3974604 28 92.9 32 A..........C................ TTGAACGTTTGACCGGAATGCGGTGCGATGCT 3974664 28 96.4 32 ...........C................ TCACCCTCTCAGTTACTTCGCCCTCTAAAAGC 3974724 28 96.4 32 .................T.......... ACACGGTCACGAATAGTGATCCGCATGATTAA 3974784 28 96.4 32 ...............A............ CATGCGCCTTGGTTGAGATCAGCTTTCTGAGG 3974844 27 82.1 0 ............GC.......-....TG | ========== ====== ====== ====== ============================ ================================= ================== 18 28 96.4 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGGCGCTCTCTACGCTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCCGCGTGTACAGCCGTACCTAACGGTGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCCGAACGGTTGCGCCGACGCTCGGTCAGCAAAGGCTGGCTAACGGAAGCGGAAGCCGCAGCACGTATCCCCGATGCCGTGGAAAAACGCAGCGCACTGCCGTTTGTGCAAATCAAAAGTTTGTCCAACGGGCAGATGTTTTTCGTGTTTGTGGAACATGGCCCGCTACAGGACACCCCCGTCGCTGGCCGTTTCTCTTCCTACGGTTTAAGCGCAGAAGCCACCGTTCCGTGGTTCTAACCCTTTTTTAGCGGCCAACTGCAAGCTATTGATTTTTAATTGCAGTTGGTCGCCCTAATAAAAAAGGGTTTTTCGCCCCAAAAGCCATATTATCCTTAACAATCTGGTGGTTAGCGTAAAACCTTAACG # Right flank : GCTTATCGGGATGCGTCGCTGGCGCGACGCATTTCGTGGAACTATTCCCCGTTGAGTGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATGCCCTGCCAAGTGCCAATGTTCAGGCGTCCATTGGTGATGGGGATCGTCAGGCTGTTTCCGAGCAAGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATACGTATGGCGGTAGTACGGCTCATCCTCCGGCACTAGGCGATTAAAGAAACTCTCGAAATCCTGCCGCACCGTAGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCAGAGGTGTGTTTGATGAACACCTGCATCAGCCCGACGTTTATCTGGCGCAGTGCGATAACCTGCGCCAGTATTTCGTCGGTCACCAGATGGAAACCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCATCCACATCGGAGTCCCCTGCTATCAGGCTTCACGCGCCAGAATAGG # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : TTCACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //