Array 1 49865-51193 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGVQT010000001.1 Listeria monocytogenes strain 7514 7514_NODE_59_length_468198_cov_64.286171, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 49865 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 49931 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 49996 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 50060 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 50126 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ACT [50138] 50194 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 50259 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 50324 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 50390 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 50454 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 50519 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 50584 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 50649 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 50712 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 50775 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 50841 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 50904 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 50969 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 51035 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 51100 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 51164 29 93.1 0 .......................A....C | C [51187] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CGTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 329993-333069 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGVQT010000002.1 Listeria monocytogenes strain 7514 7514_NODE_1_length_338230_cov_81.556847, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 329993 36 100.0 30 .................................... TTTAGGTTATGCGTGGATTGTTCCTTACAA 330059 36 100.0 30 .................................... TTCATCTTCTGTAACGTCTTTTCGTTCTCT 330125 36 100.0 30 .................................... TAAAAGCATTAATGTTATCGAAGTGCGAGA 330191 36 100.0 30 .................................... ATAGAATTTAAATGATTAGAAGGGAACTCT 330257 36 100.0 30 .................................... TCTAAACGATCCATTTGTATATTGTGTTAC 330323 36 100.0 30 .................................... TTGTAATCATCTTCACTTCTCATATATAGG 330389 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 330455 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 330521 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 330587 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 330653 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 330719 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 330785 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 330851 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 330917 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 330983 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 331049 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 331115 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 331181 36 100.0 31 .................................... TCTCTTGCATTTGGTTCTGAATAATCTCGTA 331248 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 331314 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 331380 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 331446 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 331512 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 331578 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 331644 36 100.0 30 .................................... CTTATCTAGTGCAAATACAACACTATTTAG 331710 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 331776 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 331842 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 331908 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 331974 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 332040 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 332106 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 332172 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 332238 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 332304 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 332370 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 332436 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 332502 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 332568 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 332634 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 332700 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 332766 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 332833 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 332899 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 332965 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 333031 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [333056,333062,333065] ========== ====== ====== ====== ==================================== =============================== ================== 47 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //