Array 1 232990-231371 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVHH01000066.1 Neisseria elongata subsp. glycolytica strain 431_NMEN 491_291441_5503897_378_,...,416_, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 232989 33 97.0 33 T................................ GTTAAAACAGCGGCCAAAACGATGGCGGAGGTG 232923 33 97.0 32 C................................ TTCGATTTGGGTAGTTCGTCGCGGAATTCGAT 232858 33 100.0 34 ................................. TAAAAACCGCGCCGCCCTTGTGGAATGGGTAGCA 232791 33 97.0 33 A................................ CTTTTCTGTTGGTAAATCGCTTAGATTTGCGCG 232725 33 97.0 34 T................................ GTTGTCGTTATTGTCGCTGTTGTCTGCCAGCAAG 232658 33 100.0 35 ................................. GGCAGACAACGTCTGACTACTGCGGCGCAGCTTCT 232590 33 97.0 33 C................................ AATGATTCGCCCCCGCGCCTCTCCGCGCAAAAC 232524 33 97.0 33 C................................ GGCGTTTGCCTTAGCGATAAGCTCGCGTTGTTT 232458 33 100.0 33 ................................. GATAGCAGGGCGAGAACCAGTTTTCAAGCCTTG 232392 33 97.0 34 T................................ ATTATAAAGTGAAAATAAATAAGGTTATTATACA 232325 33 100.0 32 ................................. GTAGTAAAAAGTAGCTGAATTGTGGTCAACTT 232260 33 100.0 33 ................................. GCGTTTTGGAGTGTTTATCGCATTTGGAATTTC 232194 33 97.0 33 C................................ TTCACGCAGGACACAAGACGGGCATTCATGGCA 232128 33 97.0 34 T................................ GCGGTAAGCTGCGGCTAAGGCTTGCGCTGCGGCG 232061 33 100.0 34 ................................. AAATTAGCCCTAAGCGGAGCGACTTCTATTAAGT 231994 33 97.0 32 C................................ AACAGTGTTTGGGTTTACGCCGCTTGCGATTA 231929 33 97.0 32 A................................ GATAAAGTATTGTTTTGTTTTCGCTTCGCTGG 231864 33 97.0 34 C................................ GTGTAAACTGCTGCTGTGTAAAGGTGCATAATTT 231797 33 97.0 33 T................................ GGCATCGCGCAAGGCTTTAATTTCGGCGTTCGC 231731 33 97.0 32 T................................ AACATTGGGCTGCGATTGTTTGCCCTTGCAAT 231666 33 100.0 34 ................................. CTCTGCCTTACCCGCAGATTGGCAGAAGGTTTAC 231599 33 100.0 32 ................................. ATAGTAAAAAGTGGCCGAACTGTGGTCAACTT 231534 33 100.0 33 ................................. TTCCTTTTCCTTTTAAAATCAGGATTTGTGCGT 231468 33 97.0 32 T................................ AAAGGCGTGCACCATGTATTCCGTGTCCGGTA 231403 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 25 33 98.2 33 GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGCACATGGGAATAAAAAATGCTGATGCTGATTACTTACGATATTTCGCTGGAAGACACGGAAGGACAGGCAAGGCTGCGGCGTGTGGCGAAATTGTGTTTGGACTACGGCGTGCGCGTGCAGTATTCAGTGTTCGAATGCGACATCGCGCCCGACCAGTGGGTTGTTTTAAAGGACAAACTCTTGAAAACCTACAACCCCGAAACCGACAGCCTGCGCTTTTACCATCTGGGTAGCAAGTGGCGACGCAAAGTGGAACACCACGGCGCAAAACCGGCGTTGGATGTGTTTAAGGATACGTTAATTGTGTGAATCGCCAACCTGCGGTTCTCATGAAAATGCGGCAGGGTTGGCGAATTGGGATTGTTCTTTAACAATCAGGATATTGCGAATGCGGGTGCAACGGAAAAGGCTGTGTTATACTCGCGTTCGCGCTTTTCTTGGGAGCTTAGCGAAATCAGGGCTGCGAAACCTGACGGAGCAAGGCTTTTGAGAGAGGC # Right flank : GGTCGCCACCTCCTATTTTAAAGAGGTATCTTGATCTACGGCGTTCGAACAGCCATAGCCAACAAAATATCTTCGCTGAAATGATCTGCTGCTTTGTCAATATTTGAGGCGGTGCGTATAATCCCCGTTTTTATCACTACCGAACGAGGGGATTCGTCATGAGCGAAATCCAAATTGAGAAAAAAATGAATGTCGAGAGCTTCAATCTCGACCACACAAAAGTAAAGGCCCCTTATGTGCGGCTGGCCTGTGTGACCGACGGCGATTTCGGCGACAAAATCTACAAATACGACCTGCGCGTCTGCCAGCCCAATCAAGAGCATATGGAAATGCCGTCCCTGCATTCACTGGAACACCTGATGGCCGAATTGTCGCGCAACCATTCCGATAAAATCGTGGACATCAGCCCCATGGGTTGTCAGACTGGTTTCTATATCGCCCTGTTGAACATGGGTGATTATGATGAGGTGTTGCAACTGATTGAAAATACATTGAAAGAT # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //