Array 1 1241271-1237816 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021904.1 Alkalitalea saponilacus strain SC/BZ-SP2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 1241270 46 100.0 30 .............................................. CGCCTTACGAGCTTCATGATACTGCTGTTC 1241194 46 100.0 30 .............................................. ACGCCAGACTTTTCTTTAGGAGTTAAAACA 1241118 46 100.0 30 .............................................. TTCTACGGACTGATGGGTATCTCTGCACAT 1241042 46 100.0 30 .............................................. CTGCTGATTTTCCGGCTGTCCGAGTAATAA 1240966 46 100.0 30 .............................................. ATCGTATTGATGCAAAATTAGCCATATATT 1240890 46 100.0 29 .............................................. CATCAATTATTTTTAAAGTCCGTAGAGCA 1240815 46 100.0 29 .............................................. ACATAAACGTTGGAAACATTAAGCTAAAT 1240740 46 100.0 30 .............................................. AAACAAAAGTTTCCGCAGTACCACACCCGT 1240664 46 100.0 30 .............................................. TATCGGAGGCAGTCAAGAGGATTGTTTCTG 1240588 46 100.0 30 .............................................. TGCTTGCATCCATTTAATCCATCTGTCGTA 1240512 46 100.0 29 .............................................. ACCCTGAAACACAAACGACACAACTATTT 1240437 46 100.0 30 .............................................. TATCGGAGGCAGTCAAGAGGATTGTTTCTG 1240361 46 100.0 30 .............................................. CTTCTAATGTTATCAACATCCCAACCCTCG 1240285 46 100.0 30 .............................................. ATTAATTCCTCGCTTTAAATTGTCATTACT 1240209 46 100.0 30 .............................................. CCGCTTTTTTAACCACTGGTATCTGATACC 1240133 46 100.0 30 .............................................. AAATAAATCGTAGGCCGTGGGTGTATCCGT 1240057 46 100.0 30 .............................................. AAAAGAAAGCGTATATTGAACTTCGTGAAG 1239981 46 100.0 30 .............................................. CTTCCGCTAATTTATAGTAACATTGCACTT 1239905 46 100.0 29 .............................................. TTTTTTTCTTGGCGCTTCATTTGAAGCCC 1239830 46 100.0 30 .............................................. ACTTGTTTTTAATTATCAATTCGTCTATGA 1239754 46 100.0 30 .............................................. ATCGTATTGATGCAAAATTAGCCATATATT 1239678 46 100.0 29 .............................................. AATTATTAATTTTATTTTTTTTTGTTGCT 1239603 46 100.0 30 .............................................. AGAGTACAAAAAAGGAAAAACCGCCGGCGT 1239527 46 100.0 29 .............................................. GAAAACACAATAACAGCAGGAGGGTATCT 1239452 46 100.0 30 .............................................. ATTCTATGCGAAATAATGCAATTGTTTTGT 1239376 46 100.0 30 .............................................. TTCCACCCACTTGCGACATGTTTACACGGC 1239300 46 100.0 29 .............................................. GCAATCGTTCAGGATGTTGCCCATTATTC 1239225 46 100.0 29 .............................................. GGTTAAAGAGTGCGGTGCAACGAAACGCC 1239150 46 100.0 30 .............................................. CCGGAGTTTGAAGTGGAAAAACTTGATGCA 1239074 46 100.0 30 .............................................. TGCTGCCGAATGTGCCAGATTCATCAACTA 1238998 46 100.0 30 .............................................. CGGATTTACATGGGGGGAATTCCCCATATG 1238922 46 100.0 30 .............................................. AATTCCTGAATAGAGTAGTATATCAATTGG 1238846 46 100.0 30 .............................................. TAATTGGGATATTGCACCGTTAACGCTTCT 1238770 46 100.0 30 .............................................. ACTTTTTCATAATTAGTAGTTTTAGTTTTT 1238694 46 100.0 29 .............................................. TGCAACGGGGTCTATGCAGGCCGATGTCG 1238619 46 100.0 30 .............................................. TACAACGTATCTTCTTATTTTGGAATTACC 1238543 46 100.0 30 .............................................. TTATTAACTTTCCAGCCTATTGTTCCGTCT 1238467 46 100.0 30 .............................................. ATGCTTGCAGTGCTGCCATCTAATTGGTCA 1238391 46 100.0 29 .............................................. ATTAACTATACCGCATGTTGTGGGTATGT 1238316 46 100.0 30 .............................................. TTCCAAGACTTAATTATTTCCTTTCAAACA 1238240 46 100.0 29 .............................................. GCATACTTCGCCCGCAATTCAGGGGCAAC 1238165 46 100.0 30 .............................................. CTTTAAAATTATAAGGCCGTGTAATAACTG 1238089 46 100.0 30 .............................................. ATTCATCAACTATTTTTTGTGCATTTCCTT 1238013 46 100.0 30 .............................................. AGGTACGCCGGCCATAATTTTTTCACTCAC 1237937 46 100.0 30 .............................................. CAAAACTCTTTCGCATCATGATAGTGTCTC 1237861 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 46 46 100.0 30 GTTGTGAATTGCTTTCAAATTGTATCTTTGAAATATTGGTAACAGC # Left flank : AGGAAAAAAGATACCACAAATTTGGGCGCGGCAATCTTTTATCGCGCATTGCAGGATTCCTCTTTTCGGATATTGGTGGAAGTTTGGATAGGGCTAGGAATAGTTCTTACGGGATCCGTTCAGACAGTCAGCGTCATAAGGAAGATGTCGCAGCTTATGGTGATGCTGTTTCCTTGGTTTTCAATATTTTTGTTTTGCTGTTTATAGCTTCTTTTGTTGTAGTTTTTGCTGTATGGAAGTTTTTTTACAACTTCTGGTCAAGAAACCTTTTGTCCCTTAGTACTTTGGATCAATGGTATGAGAAAAATATCTCCAATTAGGCGTATCTTTGTTAACTCTCTCATTGTAACGACATTTATTTAATTCATCCTGAATCAGGAACTAACTTTTACAGGGTTTTACTTGGCGGCAAAAAAACTGATTGTTATTCATTTGTATGCATTACCAACCCCCTTTTCAGTCAAGTATTGATAATATACATTGTATTTTTTACAGTTTCA # Right flank : AGACCTCTGTTCAAAGTTTTGTTATTGAGTGGTTTATGCCAATATTTAGAATTAAAAAATGAGCTGCTGCTAAATACAAAAAAAGTCCTGATTATGGACTTTTTTTGTTTAATGTTGAAGATAATCTCTGAAGATGGGTCTCAATGTAAATTGCTAAAAAAGTTCCAGTTGCAGATATGGTGTTTCCTTTTTATCAGGTTCTTTCCCCATAAACAGTTCCATATCGCCAAATTGTTTATCGGTTATTCTTAAAATGCCTACATGGCCTTTGGGTGGGAGCATGTTTTTTACCCGTTTAATGTGCACTTCAGCATTTTCGCGGCTCGGGCAGTGTCGCAGATAAATGGAGAACTGAAACATCACAAAGCCATCCTTCAGCATCTTTTTCCTGAAATCACCGGAGATTTTTCTGTCTTTCTTTGTCTCGGTTGGCAAATCAAAAAGCACCATTACCCACATAACTCTGAATTCATTTAATCGGTTCATGATTCGGTAAATTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAATTGTATCTTTGAAATATTGGTAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.57%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.60,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 2646221-2642777 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021904.1 Alkalitalea saponilacus strain SC/BZ-SP2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2646220 30 100.0 36 .............................. TTGTTCAAGCATGCGAAAATGTATCTCCACATCGCA 2646154 30 100.0 36 .............................. AATGTAAAGTCTATCCGAAGTAATTGACGTTATATT 2646088 30 100.0 35 .............................. TGATACAGTTCTATGAGACACGTCAGATGTATCTA 2646023 30 100.0 35 .............................. AACATCCAATCTCGTCAAACAGATCGTTGTTTTTA 2645958 30 100.0 37 .............................. AAGATTGCCCTACTACGAAGGGAGATATTTGAAAACC 2645891 30 100.0 38 .............................. TTGCACCGACACGACTGCAAGCTGTTTGCGCATTTCTT 2645823 30 100.0 35 .............................. AAACTATTCCGGGCATTGGAGGCTATCGCGGAAGG 2645758 30 100.0 36 .............................. CAGCTAAAAAAGAAGCTCCGGTTTCGGCCACTAATT 2645692 30 100.0 36 .............................. CATTAAACCACTTTGCCGGATGTGTTTCAGGTGATT 2645626 30 100.0 36 .............................. GCACTACACCGGGGGTTTCCTTTTCCTACACCGTAG 2645560 30 100.0 35 .............................. AAAGAGGTTGATACGACGGATGAGTGGATATTGGC 2645495 30 100.0 36 .............................. ACGCATTGAGCGGAGCCCCTCGGTTGTGGTGTCTAA 2645429 30 100.0 35 .............................. ATTAAGGCGGTTACTATCCATTTTCTATCGTTTTT 2645364 30 100.0 35 .............................. AACAGATATAATCCCGGGGGTGTGGTGTCAAATGT 2645299 30 100.0 37 .............................. AGGTAATCGTACTTATGTAAGCAATTTAGAACACATA 2645232 30 100.0 36 .............................. AAACTTGTTGATAATCCCACGCCCGGACAAGTTGCG 2645166 30 100.0 34 .............................. TATTGACAAGCCGTATGAGAATAGCCACATAAGC 2645102 30 100.0 35 .............................. AGAGCATTCATTTACTCTTAATTTTTCAGAAACAG 2645037 30 100.0 35 .............................. CGGAGTTGTACCGTTGCGCCGGGTTCACTAATACT 2644972 30 100.0 37 .............................. GCATTTTATTTCTTCTTTTTTTAGTTCATCGAGAATT 2644905 30 100.0 37 .............................. AACTTAGAACGCATTATTTTTATTAAAAATGAAAATA 2644838 30 100.0 34 .............................. TTTCGACTAACTACTTTGGAAAATATGTCTTCTG 2644774 30 100.0 36 .............................. TTCTTTAAAATTGAAATTACGAATCCTTTACGAATT 2644708 30 100.0 34 .............................. CAGAACAAGGGCAGGAGTGGTGGGATGAAACCAA 2644644 30 100.0 37 .............................. CTGCAATAAGAAGCGGATCTAAACTAACACAAAAATC 2644577 30 100.0 37 .............................. TTCTCAGCGGAAGCAGGCGATAGGGGGAATATTGATA 2644510 30 100.0 37 .............................. GACTCAAACCGAAACCCGGGAAAGCGAACGAGCAACA 2644443 30 100.0 38 .............................. AAACTTTGCAAATGGTTGCTCATCTTTAACAACATTAG 2644375 30 100.0 36 .............................. ATATTTTTTGCAGATATTATACTAATTTCGGAAGGT 2644309 30 100.0 34 .............................. AAGCTTTGCAGAGGGTTGCTCATCTTTAACAACA 2644245 30 100.0 34 .............................. ATGGAAGATCCAGCTATGGTTCCACCCATGGGAA 2644181 30 100.0 35 .............................. GAAGTTATTGATAACTTAATAAAGAACGATCCTAA 2644116 30 100.0 34 .............................. GAACAAAACTCAGAGAGAAATGATATGCTTCACT 2644052 30 100.0 36 .............................. CGGACTACGCCTCTAGAAGAGCTCTTTTAAAACAAG 2643986 30 100.0 34 .............................. GGCGTTATGCTACGCAATTGGGGATCTGTTATTA 2643922 30 100.0 35 .............................. GAGTTCGATTGATTCAAAGATTCCCGCCTTTAAAT 2643857 30 100.0 37 .............................. CTTTGTAGAGGTTCTCAAATTCAATATAAGGCTTATT 2643790 30 100.0 36 .............................. TTGAAGAAATTAGTAACAAGTCATCCTTTACACGGT 2643724 30 100.0 36 .............................. GTATATTGCATTGGTTATAAAAAACGATTTACCAAC 2643658 30 100.0 34 .............................. ATTGTTTTAATAGGTCTTTAATGTAAGCATCATT 2643594 30 100.0 34 .............................. GATGTTTGTTTTAATGAGACCATCCGACTTAACA 2643530 30 100.0 36 .............................. AAACTCATGCGCCTCTAACCATTTATGTTTTTTTGC 2643464 30 100.0 34 .............................. AGTTTCTCGAACCCAAAGAATATCTCCAACGTTG 2643400 30 100.0 36 .............................. GGGAAAGGAACCTTTGCACCAGAAGCAATTGCACTG 2643334 30 100.0 36 .............................. TGTTCTGACTTGCGAATATGGTGAGCCTTGTTGGTC 2643268 30 100.0 36 .............................. GTAGGTAATTCTTGAACTGTTGGTTTTTTGCCTGTT 2643202 30 100.0 34 .............................. AAGAAAACTGATTTAATCCTCTGTACCCTACATT 2643138 30 100.0 37 .............................. GATATTGGTGATGTCCTTTTCCTTGATGGATATGGTA 2643071 30 100.0 37 .............................. CAAAAAGAGGGAACACAACAAAAAACAGTTGTACCTG 2643004 30 100.0 36 .............................. TCGATAACATTGTCACGCCTAACGGCAGAAATCATT 2642938 30 100.0 36 .............................. ACTTCATCGGTTCCGTGCTTAGTCTCAATTTTGAAG 2642872 30 100.0 36 .............................. ATGTGTTTAAATATCTTCCATCCACCCCTGACCTGG 2642806 30 90.0 0 ..........T...G..G............ | ========== ====== ====== ====== ============================== ====================================== ================== 53 30 99.8 36 CTCCCAATCGCACCATACTGGAATTGAAAT # Left flank : AGCAGCTGTAATATGTATATTATCCTTATGTACGATGTTAACCAAAAACGAACCGGTAAAATGCTTAAATTATGTCGGAAGTATTTAAATTGGATTCAGAATTCGGTATTTGAAGGAGAGATAACAAAAGTAAAACTAACCGAACTTAAAATAAAAGCAGAAGAAATTATGAATGCAGAAACCGATAGTTTGATTATCTTTAAAACACGACAAGAGAAATGGCTTGAGAAAGAAATCATCGGGAAGGAAAGATCTGAAATTGACAATTTTATTTAAAAATAGTTGTCGATAACGCTATTTATAAGTCTTAGAAAGATTCCATTCTTATGAATTTCTCAAAAAAAGCTCTTTGACATACTGCAATCCAACAACATATAAAAGTTGTCGATCTTGGGATACTTTTCAACCATCAGGGGTCGACAACTTCCCTATTAATTATTCAGAATAATCTATTCCCTATAACCCAATAAAATCAATCTTTTTTTTGATTTTTCCAACGG # Right flank : AGCAAAATAACGTAACGCGGTAATTTACATAAGTTATTCTATTAACTGCATCCCTCAAGATATAGGAATTCGATACACATTCTTGTGTGAACTCCCCCATAATGCGCATTCCATTTTCGCATAAGCGCGAAAAAACAGAAAAAACCTTGTCTCCTTCTACGGGAAAATGGCTTTATCAGTGCATTATGCGCAACCTTGAAGGTACTTATTCCCCTTTCTTCAAGTGCACATCCATTTGAGGGAATGGAATATTAAGCCCTTCTTTCGGGAATGTATTGTAAACTTTTTCGTTCATATCGAAAAACACACCCCAAAAATCGGAAGCGTTTACCCATACTCTTACTGTTATATTCACTGAGCTGTCGCTCAATTCACCCAGTGCAATAAATGGAGCAGGATCATCTAAAATTCGCTGATCTTCACTAATAAGTCTCAATAAAACCTCTTTTGCTTTATCAAAACTATCACCATAAGCTATACCATAGGACCAGTCAACGCGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCAATCGCACCATACTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA //