Array 1 67984-66334 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLVS01000010.1 Pectobacterium versatile strain NY1754A NODE_10_length_105775_cov_12.9328, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 67983 28 100.0 32 ............................ AGAACGAAGCGAAACGCTGGTAAGCATCTGTG 67923 28 100.0 32 ............................ TGTTCGCTGGCGTTCGTATTCAATTTTCTCGT 67863 28 100.0 32 ............................ ATCAACCGTCATGACCTTTATGTCATTATCAG 67803 28 100.0 32 ............................ AAGCGAGAAATCGCAGAAATGGACGGCAAGAA 67743 28 100.0 32 ............................ GCACAGGTCGGCATCGCGCAGGTCGGCACTGC 67683 28 100.0 32 ............................ CCGAACTACTCCGCCAGTATGAGGATATGGAG 67623 28 100.0 32 ............................ TTGAGCAGCAGTTATCGAAAGCCAGTCAGAAA 67563 28 100.0 32 ............................ TTACACTCAATCCTCAATATTTCATGACCAGC 67503 28 100.0 32 ............................ GTAAAACCTACGGTAAAAAATATCAGACGTTA 67443 28 100.0 32 ............................ TGATACTTATGCCACACGCGCTGATTGAAGTT 67383 28 100.0 32 ............................ GCGTGGTGATGCCCCGCTGACAGCTGACATAT 67323 28 100.0 32 ............................ AGAATGAAATAATATCGATAGTGCTCGCGACG 67263 28 100.0 32 ............................ AGGCACAATTCTGTTGTTGTTTTTCAGAGATA 67203 28 100.0 33 ............................ CATCTATGCTTTCACCTTCATTTATCTCCGTAT 67142 28 96.4 32 ............G............... ATACCGCAACGCCCAGCAGGATGAGCAACGCA 67082 28 100.0 32 ............................ TTGAACAGATTGCATGGCGCACAGGCTGGGAA 67022 28 100.0 32 ............................ AGGATTGGCGCTCACTATTCATGCTATTATCC 66962 28 96.4 32 .............C.............. CCTAAATCGGGATAGCGCATTGAGTACGCCGT 66902 28 92.9 32 ........T....C.............. GACATCGGAACTACTCGTTCAAATCAGCAAAG 66842 28 96.4 32 .............C.............. TAGAGCAATGCTACCACACGATCCCGCAAATC 66782 28 96.4 33 .............C.............. TATCCTGATACGTAGCAGGACTGGCGAGAACAA 66721 28 96.4 32 .............C.............. CTGATTCATGACGTAATACGGTTCCATAGCAA 66661 28 96.4 32 .............C.............. GACAGGAGCCGAACAGCGTATCGCTCGTCGCC 66601 28 96.4 32 .............C.............. AAATCTGATGCCGATCTGATTTGCGAGTCGTG 66541 28 96.4 32 .............C.............. GATCCGAACTCAGCAATCGGCCAGCAACTCGA 66481 28 96.4 32 .............C.............. TGCCTTATTCCAGCGCTTTAGCTCGTCACAGG 66421 28 96.4 32 .............C.............. ATCAACATGACCCCGGTAACCGCTGATACGCC 66361 28 78.6 0 ............GC......T...TCC. | ========== ====== ====== ====== ============================ ================================= ================== 28 28 97.7 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TGCGTGACGGAGGTGCCGGTCCCCAGCATGACAACGCTGGTATTGGCGATGGGGATATTCCAGTACAGAGACTGGTTTCCTTCTTCCGTGACATATTCTACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAATAAATCGCAAGCTAATTATTTAATAAGAAAAAATGTAATTTTCAGAAAACTAACGGAAATCAGACTATCACAGCCGTATATAAAAAATGATGACTGCAAAAAATATTACCGAGACGCAGACCCTTTTTCTTTGGCCTATTTCACAGGCTTAACAATCAACGAGTTACCGCTGAGCTGAAAAAAAGGGTTTTTGTGGCGAAAACGGCAATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGCAACG # Right flank : CGATTTAAGCGCTATTGTCTGGCTATTATCGAGGTAGCACTGCACCAAGTGCTCAATGCGTTTACCCCTTAAATAACGCATATTGATGACCTTATTTAGTAACGTTGTTAAGTAATGAGCTTCTTTCTTAGGGAATGAAAAATTGCGGGTTGGGCATTATTGACATTTAAAAATCATCATTTTTCCGTTAAAGTGCCCTTACAGGGAAATAGTGCGTTGACTTAAGTAAAATTCAAAGGAGTGAGTGACTGTGAAATACGATCCCGTTTTAAAAACGCTTGTGGATGACGATTATCGGCTAGAGGATCATCTTGATTTTAAAAAACAGCATGCAGATATTAACTATCAGAAATTACATGCTCAACTAAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTTTTAAAGACGTTATGCACACCAAATCCTAATGACTCCTGGAAAACAGCAATATTTGGCTGTACCGATCCCATCT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.93, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 76935-77501 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLVS01000010.1 Pectobacterium versatile strain NY1754A NODE_10_length_105775_cov_12.9328, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 76935 28 92.9 32 ...........TG............... GAGTATGAACAGTATGCCGAGCGCGGGGAAGA 76995 28 96.4 32 ...........T................ GGCAAACGCAGATACGAGCGTTAATTCTGTAT 77055 28 100.0 32 ............................ AGATAATGCGTGCGGTATGGTCGCAGCCGTCA 77115 28 96.4 32 .....................C...... CACACACCTGCATGTGTCAGCACATCAAGTGG 77175 28 100.0 32 ............................ TCCTTCGCCAAGATCAGCGCTTACTTCATATA 77235 28 96.4 32 ...........T................ GTTTAATGGGTTTGTGAATTGCGTTCCTGCAC 77295 28 85.7 32 .......A.T.T.....T.......... ATGACTGATCATGCGCTGGCTGGGGTATGGGG 77355 28 92.9 32 .G.........T................ CCCGATGCACAGATGTCTGCTGAGACACAGGA 77415 28 85.7 32 T.........T..CG............. GTTTTGGCTTAGTTATCATCCTGATAAGTTTG 77475 27 85.7 0 .............C.......-....TG | ========== ====== ====== ====== ============================ ================================ ================== 10 28 93.2 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GAGGCGCTCTCTACACTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCCGCGTGTACAACCATCCCTGACGGCGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCCGAACGGTTGCGCCGACGCTCGGTCAGCAAAGGCTGGCTAACGGAAGCGGAAGCCGCAGCACGAATTCCCGATGCCGTGGAAAAACGCAGCGCGCTGCCGTTTGTGCAAATCAAAAGTTTGTCCAACGGGCAGATGTTTTTCGTGTTTGTGGAACATGGCCCGCTACAGGACACCCCCGTCGCTGGCCGTTTCTCTTCCTACGGTTTAAGCGCAGAAGCCACCGTTCCGTGGTTCTAACCCTTTTTTAGCGGCCAACTGCAAGCTATTGATTTTTAATTGCAGTTGGTCGCCCTAATAAAAAAGGGCTTTTCGCCAAAAAAGTCATATTCTCTTTAACAATCTGTTGGTTAGCGTAAAACTTTAAC # Right flank : GCTTATCGGGATGCGTCGCTGGCGCGACACATTTCGTGGCGTTATTCCCCGTTGAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTCAGGCTGTTGCCGAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATACGTATGGCGGTAGTACGGTTCATCCTCCGGCACCAAGCGATTAAAGAAACTCTCGAAATCCTGCCGCACCGTGGGGTCAGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGCTTGATGAATATCTGCATCAACCCGACGTTTATCTGGCGCAGTGCGGTGACCTGCGCCAGTATCTCGTCGGTCACCAGATGGAAGCCTCTGCTTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATCGGAGTCCCCTGCTATCAGGCTTCACGCGCCAGAATAGG # Questionable array : NO Score: 5.28 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //