Array 1 1203589-1205772 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP075922.1 Clostridium perfringens strain CPI 75-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1203589 29 100.0 37 ............................. AAATTATCGTCACCTAAAGAAACATTAGTCTCCAAAG 1203655 29 100.0 37 ............................. TCTACAATGTGTCTACCAATATCAAGCATTTTACCAG 1203721 29 100.0 37 ............................. GGGGGAGAAGATCTTGTTGAAGTTGAGGGTGGCTATG 1203787 29 100.0 36 ............................. TAGCTTCCCTCTTTATTTTTAAGATTATAAATAATA 1203852 29 100.0 36 ............................. AATTGGAGGACTTTATAGGTATGAGTATTGAATATT 1203917 29 100.0 36 ............................. TGGCAGATTGGCTAATAGGTAAGTTAAAAACAGTTC 1203982 29 100.0 36 ............................. TTTTATCACCTCATATTAATTGTAATATTTTTAAAA 1204047 29 100.0 36 ............................. ATGAATATGATTTAGCAGTAGGAGATAACTTTGAAA 1204112 29 100.0 36 ............................. CTAGATGCAGACTACTTAACACTATGGTTCGGGCTT 1204177 29 100.0 36 ............................. AAATACCCATATCCTTCTCTAGTAGCTATATGCACA 1204242 29 100.0 37 ............................. TAATGGATAATTAGTTAACTCATTCATATAGAATTTA 1204308 29 100.0 36 ............................. CATATAATTGTATAATTATCTAGAACTCGTTCATCA 1204373 29 100.0 36 ............................. GTTTCTTGATATAATTTAGCATCACTTTCTAGCTGT 1204438 29 100.0 36 ............................. CTTTATCAGTAAAAGATACATTTATTATATATCCCC 1204503 29 100.0 36 ............................. TTTTGATAGAGACAAGCTAGTTATAAAGGAGAGTGG 1204568 29 100.0 37 ............................. TACCAAATAAATGCTTTTTTTAGCAATAAAGAAATTG 1204634 29 100.0 36 ............................. ATGGTTGCTCCAGATATAGATTTAAGTCCAACAAGT 1204699 29 100.0 36 ............................. ACAGATGGATATGTTAGATATGAAGGAGGACAATCA 1204764 29 100.0 36 ............................. ATACAAGAATCTGAACTTAAAGCAAGAACAGGAAGG 1204829 29 100.0 38 ............................. TTTATGATTTGGAATTTATTTTATATTATAGTGTTTTG 1204896 29 100.0 37 ............................. CAATCAGAACCAGTAGCAACTCGAGGATAAGGACTGG 1204962 29 100.0 36 ............................. AAGCATTACTCGTAATGCCATTATATGCCTCACAGT 1205027 29 100.0 36 ............................. GTTACTGAAGTTAAAAAAAAATCTATTGAATCTGTT 1205092 29 100.0 36 ............................. TTCTTTTTCAGATGCTATTCTTAAATTCTCATTATA 1205157 29 100.0 36 ............................. TTCTTGTAGAAGGAAGAAAGGAGGAAAATGAGTGAT 1205222 29 100.0 36 ............................. CATAAACTTAGACATAGTGCAGCTACAATGCACTTG 1205287 29 100.0 36 ............................. GCTAGTAAGTTATCTATACTTGCTGTTTTGGATTCC 1205352 29 100.0 37 ............................. TTCATTTTTAATTTGATGCTCTATAGCAGTTGTTGTA 1205418 29 100.0 36 ............................. GCTAAGAGATTAGGTGATGAATCAGGTGCTTTTTAT 1205483 29 100.0 36 ............................. CTTGAAATTGAAGTAACTTTAACTTTCTTATTTAAT 1205548 29 96.6 36 ...................A......... GTAGAAGTACCAAATTTAATAAGTATAGAAATATCT 1205613 29 96.6 36 ................A............ ATTTTTTGCTCTAACCCTTGCCTTCCCATTTGAGCG 1205678 29 89.7 37 A......C...........A......... TCATCTGATAAAACTCTTAAAATAATATATTGATTAC 1205744 29 82.8 0 ............T.....T.GG......A | ========== ====== ====== ====== ============================= ====================================== ================== 34 29 99.0 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTTATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACAAAAGAAGATGTATATGATAATTTCATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGAAGAAGATTTTTATTGATACACTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAAGAGAGAATGAGGCTATTACTAGCTTTTAGCATTTTAAAATTTGGG # Right flank : AAATAAAAAAAGCATCTTAAAAAGATACCTTTAAACTTAGAATTTTTTGTTTCAATAGCAAGTGCACCTAATGCAGATATATTTCCAACAATGCTTTGGATTGCTTTATATACAACATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTCATATTTAATACTTCCAATATATATGGTAACATTAAGCTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAAAATAAACAAGATAAGTAATTTTAGTTTTATAATAAGAATTAAAAAGTAAAATGGACATGCTATCTGTCCATTTTTACTTAATTATTAATATATACTTATTAAATTAAATTTAGAACTTTGAATCTAATAATCTATGCATTTAGCAGTTTAAATCTAATAGCTCCCTTGAAATTTCCTCAAATCTTTCATCAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACCTCATTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 1711836-1712859 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP075922.1 Clostridium perfringens strain CPI 75-1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1711836 36 86.1 30 A...C.TA..A......................... GCATGAATTATTCCTGATAGTTCTTCGCTT A,A [1711838,1711848] 1711904 36 100.0 29 .................................... AATACCTTTTATACCTCATAAGGACGAGT 1711969 36 100.0 30 .................................... ACATCTTATGGAAAATATTTGTTTATAGAA 1712035 36 100.0 30 .................................... TCGAACGCTTTAGATTTAATCTTAGATGCA 1712101 36 100.0 29 .................................... TAATAGCTTATTCAGAGCTATTTGCAGAG 1712166 36 100.0 30 .................................... CTTCTATGATAAGAGCCCTTAGTCATGACC 1712232 36 100.0 30 .................................... AATACTTATTTAATTAAGTCTAATACATTA 1712298 36 100.0 30 .................................... TGTAATGCTTTATGAACTTAATAAAACTTT 1712364 36 100.0 30 .................................... ACAGAAACTTATATTTGTGCTAGAGGTGGA 1712430 36 100.0 30 .................................... ATGTGTCATGAGTTAAAAAAAGGTACTAAT 1712496 36 100.0 29 .................................... CAACTATAGGTGAATAATAATATGGAGTT 1712561 36 100.0 30 .................................... GTGAAGAAGACAAAGAAGACTCTGAAGATA 1712627 36 100.0 29 .................................... TCCTCTGGATAGGACTGAAAACTCAATTA 1712692 36 100.0 30 .................................... ACACCTATAAAGGTTCCATCTTCCCCAACC 1712758 36 100.0 30 .................................... ACAAATAACCTATCTAAGCTATCTATCCAC 1712824 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 99.1 30 GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Left flank : AGTTTCTAAAAGCAGCAAGTCTATCCTTATTCTTAAAGAAAGTATTGTAAAAAGTAAATGCTTCCTTAAGATAAGGATTATTAACTTTCAATTCTCTCATAATAACAGTAGCTCTATCTGTAGAAAATTCCTCACTATAAGATAAAATATCATAAAGCCAATCTTCCTGTGGTTTAGGTTTTTTCATATTAGAATAAACTAGAATATTTCCATCTACATTTTCTTTTTCTATATGATATTTAGTATAAAAAGCATTGTTATCATTTAACTTAATAAGCTCAACACCCTCTAAATCAAATTCATCTATCTCTTCAGTAAAATTCTCATTTTCATCATACCAGAAAACAATATGACGTACTTTTCCATCACCTAATGGTTTTGAAAAAATATCATTAAGGAAATTCTTAATTTCTTTTAAGTTCATTTGTCACCTCTAAATAAAATTTTATAAATATTTTTTAAATTAATATATAATAATATAATAACTTAAAAGTAATAAA # Right flank : TAGGAACTAATGAACCCCTTGAAACAACTAATTTCAAGGGGTTTTTACTTTCTAAAAAACATTCAATTGCCGTGAATTTATCTTCTTTTCCTGCTTTTTTGGTGATCCTACTAAGAATTTCATTTCTGTATATTGCTTTTCTGTAATCTGAAGATATCTTACTGATCCTTTTGGTGGTAAATTTTCTTTTAGTCTTGCTACATGTTTATTTACTCCATCAATACCATTACATATTCTTGAGTAAACAGAAAACTGAATCATTAAATACCCATCATTTAATAAAAATCTTCTAAAATTTTGATATTCTTTTCTATCTTCTTTTTCAACAACTGGCAAATCAAAAAATACAAGTATTCTCATAAACTTTTTACTCATAATAATGATATTCCAAAGGCTTTATCTCTGGTAATTTTAATAATCTAAAATCTTTTTTACTGCAAGCTGTTGTATAAGAAGATATCATTTTATCAATTCCATTTAAAATAGAATGATTTTTTCCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [96.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //