Array 1 50507-51252 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_NXXG01000008.1 Listeria monocytogenes strain CFSAN045855 CFSAN045855_contig_0000009, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                       	Insertion/Deletion
==========	======	======	======	=============================	======================================	==================
     50507	    29	 100.0	    36	.............................	CTCTTCTCGTGTCGCTTGTTTTGCTCATTCCGCCAC  	
     50572	    29	 100.0	    37	.............................	ATAAATTTCGCTACTTTATCAATCATTCCAAATCTCC 	
     50638	    29	 100.0	    35	.............................	ATTACATTTATTAAACAATGTACAGGTTGAATTAA   	
     50702	    29	 100.0	    37	.............................	CTTTTTATATATTGTGCGCTTAACTTAGTTGTTAAGA 	
     50768	    29	 100.0	    36	.............................	TTTTTTGTAGCGGAGGTGTACAATGCCGAAAGTGAC  	
     50833	    29	 100.0	    36	.............................	CCCTGTAGGATTAATATACAAAGGTTCTCGTTTTTC  	
     50898	    29	 100.0	    35	.............................	AATGCCGAAAGGTTCGCTTTCATTTCGCTATTCAC   	
     50962	    29	 100.0	    37	.............................	AAAATAATCATTAATGCAAACGCAATACAAATGACTG 	
     51028	    29	 100.0	    38	.............................	GTGGTAACAGCGTTCTTATTTCCTGGCGGAGCGCTTCC	
     51095	    29	 100.0	    34	.............................	TTGGTCCTTCCTATCCCTCCACCTCTTTGTTTTT    	
     51158	    29	 100.0	    36	.............................	CCTAATACACCTAAACTACTCTTATATATAAAAACA  	
     51223	    29	  93.1	     0	.......................A....C	|                                     	C [51246]
==========	======	======	======	=============================	======================================	==================
        12	    29	  99.4	    36	GTTTTAACTACTTATTATGAAATGTAAAT	                                      	       

# Left flank :   CATTTAAAATTTGGTGGTGAAGGTATGTATGTAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATAAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTTGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAAGCGTAAAATAGAGCGG
# Right flank :  CGTCTTCTTAAAATTTAAACCCAAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCTTGCAACACCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAGCTCAAAAAGAAAATCTGCACAGTTTCCGCAAACCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGTACTTTTTTATTCGCAAGTAATTCCTTCTCCACGCCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA

# Questionable array : NO	 Score: 6.23
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAACTACTTATTATGAAATGTAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:82.76%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-3] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
//