Array 1 140215-140605 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNJF010000008.1 Roseburia intestinalis strain BSD2780061689_150309_G12 NODE_8_length_140682_cov_36.7164, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 140215 36 100.0 34 .................................... AATACGCTTTTTTATGTTAGCGTAAGTTATTTAT 140285 36 100.0 38 .................................... TAGTTGATTACCTTTTTCTTCCAGAAGTTTGATTTCCA 140359 36 100.0 35 .................................... CCTCATGCCCTATTTCATCCGACATACACCAATAC 140430 36 100.0 33 .................................... TAATCTCGGCTTTATACCGTAAATCTTCTGTAG 140499 36 100.0 35 .................................... TTGATGTGATTACTTTAATCATGGTTTTGTTCTCC 140570 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 6 36 100.0 35 ATTGAGATAAGAGAACCCCGATAAGGGGACGAGAAC # Left flank : TTGACACGACAATCTGCCCGTATCAGATGGAAGATATCATAGAAGCACTGAATATTTTCCAGAATATCTGTAACCGGTATTTTTATGCAAGATTCCACTGGGAGGCAAAGGAAAAAAATACAGTATGGTTAGGTGGAGGATGTGGTTTTCTTTCAAAGACGGTTTTATATCCATTGCTTGGCAGTAATGCAGTAAAAGTTGTGGATAATGTGTTTAAAAATACACTTGGAAAAAATTATGTTGTGCATAAACATACCAAAGACCTGCAGCTTAAACTGGCACCGCATGTCTGTAAGTGTACAAAGTATCAGGGAAAGCTGTATCATATGGGGATGGGGAGGATTGAATTTGAGGAAATATGACAATTTTGCGCCGATAGGCTTAAAATCAGGCTTTGTGGATGTTATACACCAGTTTGATATTGAGGTTTCTCTCATTTGCGGGTTTGCCCCGCAAATGGGGGATAAAAGCCTTGTGTTTTGGGAGGTGTAGGGGACAGG # Right flank : GGTTACTATGTGTTAATTGTTACTAGTGTACTGACATATTGATATTTAGTTAAATATTTCTGGCTGTTATTGCCGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAGATAAGAGAACCCCGATAAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.60,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 1922-2308 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNJF010000032.1 Roseburia intestinalis strain BSD2780061689_150309_G12 NODE_32_length_40781_cov_35.6622, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 1922 35 100.0 34 ................................... TGCTATTAATTGTGTCATGCTTTTGTATTCTTCG 1991 35 100.0 35 ................................... TTGTAATTTACGAATTGATTCAAAATCATATTTCC 2061 35 100.0 38 ................................... TTTTTTATGTAACTGCTTTGCAAGTTTGCATTTCTGTT 2134 35 100.0 37 ................................... CCATTCTTCCGGCGTGCCGATTGCGCGGTACTGCTAC 2206 35 88.6 34 ..........A...T..T...G............. CCAGATGGGTTTGATTTTTCTTGCATCTTCCTGA 2275 34 88.6 0 ..............-.....AG..........A.. | ========== ====== ====== ====== =================================== ====================================== ================== 6 35 96.2 36 ATTGAGATAAGAGACCCCCGTAGAGGGGACGAGAA # Left flank : TTTTCGGGTTCAGAAATCGGCATTTGAGGCGATGGTTACGGAAAATTTATATCGACGTTTGTTACATGATATTCCGGAGCTGATTGACCGTAGATCGGACAGCGTGAGAGTTTACAAAATAAGAGGTTATGGAGAAGTCAGCCTGTTTGGGGCAAGTCCTGAAATTAAAAATGAAGAAGTGATTATTATAGGGTAATATGACAAAAGATATATTATAAATACACTGGGCAGAAATTATGTTGTGCATAAACATACCAAAGACCTGCAGCTTAAACTGGCACCGCATGTCTGTAAATGTACAAAGTATCAGGGAAAGCTGTATCATATGGGGATGGGGGAGGATTGAATTTGAGGAAATATAATGATTTTGCTCCGATAGGCTTAAAATCAGGCTTTGAGAATGTTATACACCAGTTTGATATTGAGATTTCTCTCATTTGCGGGTTTGCCCCGCAAATGGGGGATAAAAGCCTTGTGTTTTGGGAGGTGTAGGGGACAGG # Right flank : ACTTGAAAACCTGCCCCGGATAAATCAAATTAGGGTTTACTGAGATATAAGAACCCCGCTAAGGGGACAAAATTAGAATAAATTTTTACTAAATAACCATGCAGGAAAATTAAATCATTATTACGAAAGATGGAGATTATTATGAATCAGACGATATTGTTTACACCAGTGGGAGGAACCGACCCGATTTCATTAAATAATTATCATGATGGATCAATACTGCATATTTGCAGATTCTATAAACCGGATAAAGTCATTTTGTACATGTCAAAAGAGATGTTGGATTTTCAGGAGAAAGATGACAGGTATCGTTATTGTCTGGACCGTCTGGCAAAGATGCAGGATCGTCCCATGATTTATGAGATCATAGAACGCCGGGAGCTTACCAAAGTACATGAATTTGATTATTTTTACGAGGATTTCAGGAAGGTGATCAGCCATATATATGAGACGATGGATGATTCAGATACACTGCTTTTAAATGTGTCATCCGGTACACC # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAGATAAGAGACCCCCGTAGAGGGGACGAGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA //