Array 1 11458-8624 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWZ010000028.1 Erwinia amylovora strain 1480-3 Ea_1480-3_contig_28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11457 29 100.0 32 ............................. CCAGATGTGGACCTGAACTCTGGTAGTCACCA 11396 29 100.0 32 ............................. TTGAGCACGGTAACCCTCGCCACCCGGCAGCT 11335 29 93.1 32 .............AT.............. TTTTTGTACTGTGAGAAAACGCTGTCAGAGGA 11274 29 100.0 32 ............................. CCAGTTAGGATGTCTCTTTCATGATTTATATA 11213 29 100.0 32 ............................. CCCGAGCCCATGTGCTAGTGCCGGTAAGAAAA 11152 29 100.0 32 ............................. GCGTCCTGGCCATCGAGTGCGTATATCCATGT 11091 29 100.0 32 ............................. CAACCAGTTTCGTTAGTTGTTTCTGGGATTAA 11030 29 100.0 32 ............................. GTTGAAAATTGACCATTACAAGAAATTTAAAA 10969 29 96.6 32 ............................C TTTTACGAATATGTCTTGTATCCCGGCTCTGG 10908 29 100.0 32 ............................. GGAAAAATTATCGAGCTGGCAAATAATAAAGG 10847 29 100.0 32 ............................. GATAATGCGGAGTTTTCGGGCACGCTAGAGGC 10786 29 100.0 32 ............................. GTGCAGAGATGCCGATATTGACAGATCCAATT 10725 29 100.0 32 ............................. CGCGATTGAAAGGGCTGTGGTTTATCGTGATG 10664 29 100.0 32 ............................. TTCCCATACCTTCACGGCCCGACACTTTGCGA 10603 29 100.0 32 ............................. CGCTTAATCAGCTCAACGCAGCGAAGGACGCT 10542 29 100.0 32 ............................. TCGCGGCAAAGCGCCTTTTGCCGCTGTATGGC 10481 29 100.0 32 ............................. GTGTTCTTCATCTGTATCCACTTCACCCACGC 10420 29 100.0 32 ............................. CAGGGTGTGTGGCTCACGCGCTTTCATCACGT 10359 29 100.0 32 ............................. GTGTTCCGCCTGGCTGGGAGAATGTGGATGGC 10298 29 100.0 32 ............................. CTGAAAATGAGTGGTGGGCAGCCGGGAGTTAG 10237 29 100.0 32 ............................. AACTTACGGTGGCCTGGCTTGAACTTCCGGAC 10176 29 100.0 32 ............................. CCGGGCGAATGCGGGGATTGCAGGGGCAATGG 10115 29 100.0 32 ............................. GTATTTATAAACGATTCATTAATACGCTTATA 10054 29 100.0 32 ............................. CAGCAACCGGTGGTATTTTTCCGGGTCGGTTA 9993 29 100.0 32 ............................. GAGATAGCTAACATACTTAACTTATCGCCTAA 9932 29 100.0 32 ............................. GTGATAAGCGTACCCTGCAGACGGCAAATAAC 9871 29 100.0 32 ............................. CCAGCTCCAGTGCTACCGCAACGCCAGATTCA 9810 29 100.0 32 ............................. AGTAATTAATGATTCTGAAATCTCTCTTAATA 9749 29 100.0 32 ............................. TTTGGTGACAAAGGATGGGTGCGCGAGGAAAT 9688 29 100.0 32 ............................. AACGTAATCAGTGGGCTGATATGCACGGTCTG 9627 29 100.0 32 ............................. CCGCAGTGGTGTTGTGGTTCTTAGCAGGCCGA 9566 29 100.0 32 ............................. GGTGAGTGTTTAATACTTCCCCTTTGGAGGCA 9505 29 100.0 31 ............................. ACAAAAGACAACACCCCCTTACCCCCCCACG 9445 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 9384 29 100.0 32 ............................. TGAACGAGCGCGAGGCACCTGACGGTGCAGAC 9323 29 100.0 32 ............................. GTGGTGACCTCTTTGTGGGCGGCGTTTCTGGG 9262 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 9201 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 9140 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 9079 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 9018 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 8957 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 8896 29 96.6 32 ...........A................. CGCAATTTTTAGACAATGCAGAATTTTATTTT 8835 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 8774 29 100.0 32 ............................. CCCAAAGGAACAACGAGAGCTATCCAAACCAA 8713 29 96.6 32 .................A........... TCATATGCGATTTTCAGCCTTTTAAGACCTTC 8652 29 86.2 0 ..........A.......A.A.....T.. | ========== ====== ====== ====== ============================= ================================ ================== 47 29 99.3 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCGGCCTTATTCGGGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGGGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : CATGCGCTGACGAAGATGGCCTTATCACAGTCACCATCCGTAATTTGTGCCGGGAAGCGTCGACGTGACCACGATCGGCATTCTGCACCAAACCCGCCGACCATCGGCATTAAACAAGCGTGAAATTTACATCATATCATCATGGGGTTCCGCATAAGCAGGGTTAGCCTTTATTCACTACTTTCAACTGACCAGATATTTCAAATCATCTATTTTACGATAAATGCTGAGAACCATTGATATGTCAGAAGACCAAAGTCAATATGGCTGGGGATTTTTAAAAAGGGGCCGAAACCTTGAACTTATATAAATGATGGATAAATTAATGAATTTCAGGTTGATAATGGTTCTGATTATTATATTCACGTTGCTGCTGTTGTTTTTTTCTAATATCACGATGCTTAATTCAACTATCAATATCAGAATTTTTTTTAGATTAAAGTCATTATTTCCCCATTTATGGGGATAAACCTGGGCCAATGTCTTGAACCTAATGTTCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2-1923 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWZ010000029.1 Erwinia amylovora strain 1480-3 Ea_1480-3_contig_29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2 29 100.0 32 ............................. GAGAGCAACAACAAACTCCGACCGGAGAAACC 63 29 100.0 32 ............................. TACACTGCAGGCAGTACGGGAATGGTTAACCC 124 29 100.0 32 ............................. GTTTCGGCGAGCGCGTATATGGTCACGTTCAC 185 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 246 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 308 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 369 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 430 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 491 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 552 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 613 29 100.0 32 ............................. ATGGCCCGCTAAATGTTGACATGTCTGGTCGG 674 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 735 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 796 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 857 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 918 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 979 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 1040 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 1101 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 1162 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 1223 29 100.0 32 ............................. CGCGAGTACCCATCCATCCCCGCAGAGGCATT 1284 29 100.0 32 ............................. GCAGGGCCGGTTTACGTTGCGCAATCGGAGAT 1345 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 1406 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 1468 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 1529 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 1590 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 1651 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 1712 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 1773 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 1834 29 96.6 32 .........A................... ATGATGGAGCTGATAGTTTTATTAGATGTCGA 1895 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 32 29 99.1 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : CG # Right flank : AATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 11387-11715 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWZ010000029.1 Erwinia amylovora strain 1480-3 Ea_1480-3_contig_29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 11387 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 11447 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 11507 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 11567 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 11627 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 11688 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //