Array 1 23122-22888 **** Predicted by CRISPRDetect 2.4 *** >NZ_CMYN01000030.1 Neisseria meningitidis strain NM2254, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 23121 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 23055 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 22989 36 100.0 30 .................................... TTATGCCGTTTTCATCCGGCTTGAACATTT 22923 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTCGGCCGCTTTATTTCTGCCATATCGACGGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATCCTATGCCTGTTATTGTTTTCAGCCTTTTGGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTTTAAAACCGCAAACCAGTTTGTATCCTATGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATAATAACAACCATTTTGTTATTTCGATTTTTGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : NA // Array 2 24410-23320 **** Predicted by CRISPRDetect 2.4 *** >NZ_CMYN01000030.1 Neisseria meningitidis strain NM2254, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 24409 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 24344 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 24278 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 24212 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 24146 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 24080 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 24014 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 23948 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 23882 36 100.0 30 .................................... TCCTGCCAATTATCATACATAAGATTTTGC 23816 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 23750 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 23684 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 23618 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 23553 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 23487 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 23421 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 23355 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 100.0 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : AGCTCCCTTTCTCATTTCGCAGTGCTACAATCCAAATAGAAATACATACGCCGAGTAATTAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTTTCTTTTTGTAATTGTTCTGCCTTTTTTAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTTAAAATAATAACCCAATACACGATGTTAAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATAAAACCAACCGGGTATTCATACACAGCCAAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATCCGTTGATGACGGATGTGTCGGGTTGCGGAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATAATAACAACCATTTTGTTATTTCGATTTTTGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTTATGCCGTTTTCATCCGGCTTGAACATTTGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 3 25377-24615 **** Predicted by CRISPRDetect 2.4 *** >NZ_CMYN01000030.1 Neisseria meningitidis strain NM2254, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 25376 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 25310 36 100.0 30 .................................... CTTCTGCCTTTTTACAAGCTCGCTTTCTTT 25244 36 100.0 30 .................................... TTTGGTAAAGGTTTCTGTTGCGACCCGAAT 25178 36 100.0 30 .................................... CTTTAACTTTGACCGTGTGCAATCCAGTTA 25112 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 25046 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 24980 36 100.0 30 .................................... ATGATGCAGGCTGCTCCGTCATCGTCTGCA 24914 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 24848 36 100.0 30 .................................... TTTCTTTTTGTAATTGTTCTGCCTTTTTTA 24782 36 100.0 30 .................................... TTAAAATAATAACCCAATACACGATGTTAA 24716 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 24650 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 99.5 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTCTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTCGGCCGCTTTATTTCTGCCATATCGACGGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATCCGTTGATGACGGATGTGTCGGGTTGCGGAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATCCAAATAGAAATACATACGCCGAGTAATTAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATCCGTTGATGACGGATGTGTCGGGTTGCGGAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : NA //