Array 1 68354-68698 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHPP01000052.1 Bifidobacterium longum subsp. longum strain MCC10006 contig0052, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ====================================================== ================== 68354 27 66.7 39 G..C....C.....C...GCC....GA ACCGCCACGGCGGTCATCACGATCGCCACGGTCATCGCG 68420 27 96.3 54 ........................A.. ATCGTCACGGGAGTCGCGAGCATCACGGTCATCGCGATCGTCGAAGTCACGGTC AGA [68426] 68504 27 81.5 33 GG.A..A.................A.. ATCATCGCGATCATCGCGATCGAAGTCACGGTC 68564 27 100.0 21 ........................... GTCGTAATCATCCTCGAAGTC Deletion [68612] 68612 27 100.0 30 ........................... GTCACGATCGTCGAAGTCACGGTCATCGCG 68669 27 81.5 0 C.............C.....C....CG | GC,C [68686,68690] ========== ====== ====== ====== =========================== ====================================================== ================== 6 27 87.7 36 ATCGGAGCGACGGCGACGCGGACGGTC # Left flank : CATACGGCATAAAGGCCGGGCTCTCACAAGGGCCCGGCCTTTGTTGTTGCCACAGTGATCAACGCCCATGAGTACCTTCGATGATCATCCGCCATTCTTGATGCATGGGAATAGTTGTCAACTGACAACTGAATGTACATGGCAGCAGCACGAGTGCCCTATTCAACATCGAAATATGCAGCGCGAAGAAGCCGAAAAACCAAAAAGGCTTCTATACCGAATGAAACGGTATAGAAGCCTTTTGGTTTGCGATCAAGCCCTTCTCACCCGAGAGAAGCTAGAGAACGATCAGTCCTCGAATGCCGAACCGTTAAGCGGGAAGCCCTACGGGCTTCCCGTAGGTGAGGGGAGCGGCTATGCCGCGACCGATCCGTGAGAGGGATTTAGTCCTCGAACGGATCAAAGTCGCGACGGACGCGGCGACGCGGGCGCTCAGTACGCTCTTCGCGGTCGGCGCGGTAGTCGTCGTAGTTGTCGTCGGTGGCGTAGCGCGGGTTACG # Right flank : GATCGTCACGGTCACCACGGCCACGGCCGCCACGGCGGTCATCGCGATCGCCACGGCTCGGGCGGGCGTTGTTCTCCTGATCCTCGAAACCAGGAATGGCCAGGGAGATCTTGCCGCGATCATCGACACCCTGAACGATCACCTCAACGGTGTCGCCTTCCTTGAGCACGTCTTCGACAGCGTCAATACGCTCGCCGTTGGCCAGGTTGCGGATCTGGGAGATGTGCAGCAGGCCGTCGGTGCCGGGGGTGAGGTTCACGAAAGCGCCGAACGACGTGGTCTTGACGACCTTGCCGTTGTAGGTTTCGCCGGCCTCGGGCACGTGCGGGTTGGCAATCTGGTCGATGATGGCCTTGGCCTTCTCAGCAGCCTCGCCACCCTCGGAGGAGATGAAGACGGTACCGTCATCCTCGATGGCAATTTCAGCGCCGGTGTCCTCCTGAATCTGGTTGATCATCTTGCCCTTCGGGCCGATGACTTCGCCGATCTTCTCAACCGGG # Questionable array : NO Score: 4.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.43, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGAGCGACGGCGACGCGGACGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGAACGACGGCGACGCGGACGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 21639-24822 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHPP01000047.1 Bifidobacterium longum subsp. longum strain MCC10006 contig0047, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 21639 36 100.0 28 .................................... CTGCTCCATGCCCTTGCTCCTTCCGTTC 21703 36 100.0 29 .................................... CTGACGCTCGTTGCGCTCATCTGGGGTTT 21768 36 100.0 28 .................................... TGAGGTGCGCCCGGCTCCAGTGCGCATA 21832 36 100.0 28 .................................... TATCGTCTGTTGACTGAACTGGCGTTGA 21896 36 100.0 29 .................................... CGATGTTCTGACTGTACATCGTATGCACG 21961 36 100.0 28 .................................... ATAACGATTAATTCATGATTGGGCATAT 22025 36 100.0 29 .................................... AACGCGCTGAAATACGGGTTGGCCAATGT 22090 36 100.0 28 .................................... ACCGTCGCCTGCTCGCGCTCAACTTCGA 22154 36 100.0 28 .................................... ACGTTGATGATGGCGTTTCGGTATTCCT 22218 36 100.0 28 .................................... AATGAGATCGTGAAGTTCAGCAACCAGT 22282 36 100.0 28 .................................... GTTGCCTTTCCTTATAGGGTTTAGTAAT 22346 36 100.0 28 .................................... GATTGCCTAGGATACGGAGTTTGCCATA 22410 36 100.0 28 .................................... TCCATCTCCTGTTCGAGCAGTCCTATCG 22474 36 100.0 28 .................................... CACGGCCGAGCATGGGACCGAACACTTC 22538 36 100.0 28 .................................... TCCCTAAAGTACGCAGTTTTTCGATTGA 22602 36 100.0 29 .................................... TTGTGCATGATAGCGTTTGCCACGCCTGT 22667 36 100.0 28 .................................... CTTTCTTCTAGGCTCTGGCGTTACCGAC 22731 36 100.0 28 .................................... CTTGGTTCTTCCTTTTCAAGCCTACGTC 22795 36 100.0 28 .................................... AAACGAGGCATTGATGAGAACGTCGTAC 22859 36 100.0 28 .................................... TCCACCGACGTGATGGACAACTACACGA 22923 36 100.0 28 .................................... CTTTGGGTGACGATCCACTTGTGGATGC 22987 36 100.0 28 .................................... AAGCAGGCCATCGCTCGCGCCGACGAGG 23051 36 100.0 28 .................................... CTCAGGCATGATACTGTTTTATATGACT 23115 36 100.0 28 .................................... CCATCCATAGTAGTGGTATCGAAGAAGT 23179 36 100.0 28 .................................... TCGTCTTCGGTGCCCACTCGCGTGCAGC 23243 36 100.0 29 .................................... ATTCATGACGCTTCGGGTGCTGTTGCCGT 23308 36 100.0 29 .................................... GTGAGCTTGTCCGTGTCTTTCATCAGTGG 23373 36 100.0 28 .................................... TGTTTACGCTCAAAAAGCACATTAGATT 23437 36 100.0 28 .................................... CCGAGGCCGGTAGGGTTGCGTGTCTGGT 23501 36 100.0 28 .................................... GTTGTAATCGGTCATAATAGTTTTCAAT 23565 36 100.0 28 .................................... TCTCCCAGTTGCTGCCCCTTGGCGTCGA 23629 36 100.0 28 .................................... CGTATTCATCGTGGCCTCTTCGCGGTTT 23693 36 100.0 28 .................................... CGTACATGATGGGGTCCTTGACCTTGTA 23757 36 100.0 28 .................................... TTGGTGGTGTTGGGCGTCCGGCGCAGAA 23821 36 100.0 29 .................................... TCGTCGTCCATCTCTGTACCTCGGTTTCT 23886 36 100.0 28 .................................... TCCATGACCGCGTCCATCACCTCATGCC 23950 36 100.0 28 .................................... CGTTCCCCAGTGGGGTGAGTGTGATGCC 24014 36 100.0 29 .................................... ACCGATTGCAACGCGAATATCCCGGGTAT 24079 36 100.0 28 .................................... GTTGTTCCGGGAACAACTGGGAACAACT 24143 36 100.0 28 .................................... CTTGCCTCCGTTCTGCATCCAGCTGTCG 24207 36 100.0 29 .................................... ACGCGGCGAAGAATCTTGTTATCGCGGCT 24272 36 100.0 29 .................................... GTCGCACGTGGCATGGCATGTTGGCGAAC 24337 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 24402 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 24466 36 100.0 29 .................................... TCATGGGACTGTGAGCGGCGGCGGCGTGA 24531 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 24595 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 24659 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 24723 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 24787 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 50 36 99.7 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : TGCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTGCGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCGGGCTTGTCGGTTCACGCGAATATCGTGGAACACATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCAGCCAAGCTGCTGCAGCGCGCCGGCTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //