Array 1 39782-38165 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMBZ01000017.1 Escherichia coli strain MOD1-EC6143 MOD1-EC6143_17_length_109416_cov_54.4203, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 39781 29 100.0 32 ............................. GTTCCACGGCATCAGTTACCTCCCCAGCCGTT 39720 29 100.0 33 ............................. TCCTCGAGTTTATTTGCTGCTGCGACCGCCTGC 39658 29 100.0 32 ............................. TTAGATCACACCTGGATACGAGAACAAATTGA 39597 29 100.0 32 ............................. TGCGCGGAACGGAGATTGTAAATATCAAAATC 39536 29 100.0 32 ............................. GGAGGATGTTCGGTCCCGGAACTAAACCGGCA 39475 29 100.0 32 ............................. GTGGTGTCTGGTCTGTCGTTCACTCCCGCAGT 39414 29 96.6 32 ..........................T.. GTTATCCCACGGCTTACCAGGTACTTTTCTCC 39353 29 100.0 32 ............................. GAATCCGCATAAGGAAATATAAATGGAACGAT 39292 29 100.0 32 ............................. AATTAATTGCCTCGCCTTTTCAGTCGTCGCCG 39231 29 100.0 32 ............................. CCTGTGAGCCTGTCAGCGTCGAATAAATATAA 39170 29 100.0 32 ............................. TTTTCCCCGGCGCTAAACGGGGTAAAAAAATT 39109 29 100.0 32 ............................. CGTGTCTGCCGCTGCTGAGCTGTGCGGGGATA 39048 29 100.0 32 ............................. GCGCTCTCCTGAACCTCTTTCAGTCCGTCGAT 38987 29 100.0 32 ............................. CACCACATGAACCGCGACGCAGCGATTCACCG 38926 29 100.0 32 ............................. TTGCTAACTGGCGCGAAGAGCGCGCGCGGGCT 38865 29 100.0 32 ............................. ACAGTGAAATATATTGGGATAACATAAAGTCG 38804 29 100.0 32 ............................. GCGCACATATGAAAAAAGCCACGGGTTACGCG 38743 29 100.0 33 ............................. AAACGCGGGATTACGCGCCTGTTTGAAATCTGC 38681 29 100.0 32 ............................. TGATTGTGGAACATCCGTTTGACCTGCTGGCC 38620 29 100.0 32 ............................. GTCTATATTATGATGAAGAGGCAACCATTGAA 38559 29 100.0 32 ............................. CAATTCATAAATTAATTTACTATTTTGAGTGC 38498 29 100.0 32 ............................. ACGGCGAATATAGCTGTCAACGCGCTCGACAT 38437 29 100.0 32 ............................. TGAGATCAAACGTTAGCCCGGCGGTAATTTGC 38376 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGTCTGGGTGGTAAG 38315 29 100.0 32 ............................. ACCTCGACAATGACACGGGCGCGAAAACAATC 38254 29 100.0 32 ............................. TCGGTGGCTGGATTGAAAAAGAAGATAATCTG 38193 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 66547-65481 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMBZ01000017.1 Escherichia coli strain MOD1-EC6143 MOD1-EC6143_17_length_109416_cov_54.4203, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 66546 29 100.0 32 ............................. GCAATGGCATGGGCGAAGCAGAACGCAAAAGA 66485 29 100.0 32 ............................. CTGACACACTCAAGAAAAATCCCCTGCACATC 66424 29 100.0 32 ............................. TCTGCCAGTTCATTCAGGGCTATCGCCAGCTC 66363 29 100.0 32 ............................. ATTTTATGTGCCGCGTTGAGGCGTGGGCGTTA 66302 29 100.0 32 ............................. CATAATGAAATTGGCCTCAAATGAGGCCAATT 66241 29 100.0 32 ............................. TCAGTTTTCTGAAAAAATTATTCTCTTATGCT 66180 29 100.0 32 ............................. CTCTTCAATCGCTTAAGGATCAGAGAATAGTT 66119 29 100.0 32 ............................. GAACTTGATCTGATTTGTGAATTTATTCGATC 66058 29 100.0 32 ............................. GAGATTGCGACGCTCCGTCAGCGCATCACAGT 65997 29 100.0 32 ............................. TGGGAACTGGCCCGCGCCATTGGTCAGGGGAA 65936 29 100.0 32 ............................. AACAAGCTCGCCCGGCCCGTCCTCATCAAGGG 65875 29 100.0 32 ............................. CCACTGCACTGACTCTCGTGCGTACGCTGCGG 65814 29 100.0 32 ............................. GCTGGCAACTGAATGCCCGCCGTATTGCCTTT 65753 29 100.0 32 ............................. CAAAGGCCCGCCAATGCGGGCCGATTTATCCC 65692 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 65631 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 65570 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 65509 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //