Array 1 461003-462128 **** Predicted by CRISPRDetect 2.4 *** >NZ_MATI01000011.1 Salmonella enterica subsp. enterica serovar Thompson strain STh02 contig19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 461003 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 461064 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 461125 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 461186 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 461247 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 461308 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 461369 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCAGACCGATCGACTA 461430 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 461491 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 461552 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 461613 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 461674 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 461735 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 461796 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 461857 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 461918 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 461979 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 462040 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 462101 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 478299-479428 **** Predicted by CRISPRDetect 2.4 *** >NZ_MATI01000011.1 Salmonella enterica subsp. enterica serovar Thompson strain STh02 contig19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 478299 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 478360 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 478421 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 478482 29 100.0 32 ............................. TTTGGTTGATGCGTCAAACCTCGCTAACTTTG 478543 29 100.0 32 ............................. GCGGAATAATAAATGGAGTGCCATTTGTAGCA 478604 29 100.0 32 ............................. GAGCGATGTTGGCATGGCATTGGTTTACTGTA 478665 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 478726 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 478787 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 478848 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 478909 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 478970 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 479032 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 479094 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 479155 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 479216 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 479277 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 479338 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 479399 29 93.1 0 A..............A............. | A [479425] ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGTGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //