Array 1 58553-58942 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_MIIW01000022.1 Shigella sp. FC1655 NODE_13_length_98153_cov_30.5279_ID_25, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	============================	================================	==================
     58553	    28	 100.0	    32	............................	TTGTTCTGGTAAAAAAGGCGGTGTATCTCACT	
     58613	    28	 100.0	    32	............................	TGCAACAAGCGTTGTAAATTGGAATGGGTCAC	
     58673	    28	 100.0	    32	............................	CGTACCGTCAAAGTTATAAGAATCTTCTTTAT	
     58733	    28	 100.0	    32	............................	GCTCATATGGAATGAGCAACGGATCATTACTG	
     58793	    28	 100.0	    32	............................	GCTCATATGGAATGAGCAACGGATCATTACTG	
     58853	    28	  96.4	    32	.............T..............	TGATTCATTTGACAGAGAATTCTACTGATGAA	
     58913	    28	  82.1	     0	.............T......AA....GC	|                               	AA [58933]
==========	======	======	======	============================	================================	==================
         7	    28	  96.9	    32	GTTCACTGCCATACAGGCAGCTTAGAAA	                                	       

# Left flank :   GCATATTAAGTCTATCCAACCAGTACCTGAATATACCACGTCAGTTTGTTATCTTCGTGAGCATATAAAAGGTAAGGTGCGTGTAGAAAAAGAGATGTATAAGAAAGCTGTATTATGGGCTAAAAAAACCGGTGCAACTATCGAATCATGTTTATCTGAATTAGAAAAAACACGACCTAAGCATAGTCAATTACCTTTTATTTGGATGGAGAGTCAGCGGACTAAACAACGAAATGGAGAGACACAAAAATTTCCTTTGTTTATAAAGCAGATTTTTATAAGTTCGCCACAACAACAGCATTTTAATTGTTATGGATTAAGTTTATCTCAATCTAAGCAAGAATTATTGTCAACAGTACCTTGTTTTTGACCTTTGTTTTTCGCTCTTTAATAATGGAATGATAAATCAATAAGTTATAATAGTAGGTAAAATAAAGGGGTAAAACCCAAATTTATCTTTAGCCTATTGTTATAACTTGTTTTTTATGTTTTTATTTCTT
# Right flank :  CAACGGCTTAGAATGCCATTGCTCTATTACTTTATCAGGTGCGCCGTCCTTTAAGATGGGAGGATATCAAATCCTACCAATACCCCAATACTTTCCACCATGCACTGCCAAGCGTGATCCAAATAATAAGATTAACCACACTCATCACAAATCCCGTTTTCCACCATTCGCCCAATGTCGCGTAGCCTGAACCGAAAATAATGGGGGCTGTACCTGTACCATAATGTGTTAATGACATCATCAATGAAGAAGAGAACGCTAAAATAAGGCCTAATAACATGGGAGGGGCGCCAAGGGCTAAACCCGCGGCATAGAACGCGGCAAACATTGCGGTAATATGAGCGGTAGTACTGGCAAAGAAATAGTGAGAATAAACATAAATGAGTACCAGTAATATCATGCCACTGACCCAACTTATTCCCATACTATCAATACTTGCTCCTACACTGAGTGACAACCACTTAATTAATCCTAGTTTTCCTAAGAAGGATGCCATCATA

# Questionable array : NO	 Score: 6.11
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTCACTGCCATACAGGCAGCTTAGAAA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:53.57%AT]
# 	Reference repeat match prediction:         F [matched GTTCACTGCCATACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-7.20,-8.40] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-8] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [80.0-53.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.18,0.37   Confidence: HIGH] 

# Array family : I-F [Matched known repeat from this family],   
//