Array 1 9783-9087 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_MTBX01000086.1 Actinobacillus suis strain H91-0406 Contig_86, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
      9782	    36	  97.2	    30	..C.................................	TTTATATGCTTACATCACTTCATTCACTGC	
      9716	    36	 100.0	    30	....................................	TTGCTTTACGAAGGTATAAGCTCCGTCCTA	
      9650	    36	 100.0	    30	....................................	GACAGCATATCTGTTAAACCCGGTCAGAAT	
      9584	    36	 100.0	    30	....................................	CGCATACATTAGGCATTACCCTCAACCACT	
      9518	    36	 100.0	    30	....................................	AAATGGGGCGAGCCAAAGCGAGAGCGAAAG	
      9452	    36	 100.0	    30	....................................	CTCGCTGCGCCGAGCGTTTAACCAGCTCTG	
      9386	    36	 100.0	    30	....................................	GGGATAGATATTACATGGCTCATAAATTCC	
      9320	    36	 100.0	    30	....................................	TCAATATTGCTGCCATTTTTCGCATTTTTT	
      9254	    36	 100.0	    30	....................................	GAAGGCTTTAACTATGATGCGGTAAACGAA	
      9188	    36	 100.0	    30	....................................	CATCATCTGAAGTAATACTAATATTATTCT	
      9122	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        11	    36	  99.7	    30	GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT	                              	       

# Left flank :   ATTTACCTTGATTTGTGCAGCTTTATGCCACACCAGTTTTGCAAATTCTGCTGAAAATCCGACCGCTTATACGGAACACGCCAAATACAAAATCTCCGCTACCGATATGAAAATCTTGGTTCGTCAGTTAAATAATATTGAACAATGCCTTTTCCCCGATCTTGCAAAACCGAATTACCAACAAATCTATGACAATTGGTCTGTTGCCGAAAGCATGACGATGCTCTATTTCCAGCAAAATTTATTAAAAGAGTTAATTGGCGAACACAATGCTCAATTGATCGAAAAAGACGAATCCTCACGTCTTTACTTTGAGCAAATGCATGAAAAATATAACCACCAAAAAGCTAATGTTGATAAATCTCGCTGCGAAGAGTTCAAACCAATCTACGCTCAAATCAAACAGCAAATTGAATACTCAATACCACAGGTGTATAAATAAGCTTTCTTAGTTATTTCACATAGCTACAATTCGACTCTGGTACACGACTTCGTCAGGA
# Right flank :  CGGGACTCTAAAAAGCCTTGAGCAGTAAGGGTTCAAGGCTTTTTTATTATTAAAAAAATTGCCTTAAAACAGTAAAAGTTGGTTCGAATTCACCTTTTTTTCTTGCAATTTTTTCTCTCCAACTAGAATTTCCATATTGGCGAATTGTTTTTCAGTAATAGAAATGCAACGAATTGAACCCTCTTCAGGCAAATGTTCTACTAGTCTTTTATGATGTTTTTCCATTGAATCTCGCCCTCGAATAATTCGAGTATAAATAGAAAGTTGTAACATTTGGTAGCCATCTTTCAGCAAAAATTGCCGAAATTGATTTGCGGCTCGCATTTTGGCTTTGGTTGTTACAGGTAAATCAAATAATACAATCATACGCATAAACACATTCTCACTCATATTGATGCTCCGCAAGCGGTAGAATTTCAGGAAGTTTTAACAAATCTGCATTTCGTTGAGTTAATGCAGATTGAAATGAACTCACGCTTCGCTCAATACCGGTTAAGGTA

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:61.11%AT]
# 	Reference repeat match prediction:         R [matched GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.90,-0.40] Score: 0/0.37
# 	Array degeneracy analysis prediction:      F [0-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.41,4.5   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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