Array 1 33-427 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALNP01000012.1 Streptomyces sp. AA0539 contig00012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 33 29 100.0 32 ............................. CCCGGCGACGCGATGCCATCACTGAGGCAGGT 94 29 96.6 32 ............................T GATTCATGATCGCCTCGCGCTGGGCCATCGTG 155 29 100.0 32 ............................. GAGCCCCGGCAGTGTTGGAGCACTCCCGGGGG 216 29 93.1 32 ..............T.............C CACCACGGCCTGGTCACCCCGGAGTCGGTGGA 277 29 93.1 31 ..............T.............C GCCGCCTGATGGAGCGGCTGACCCGGTGTGG 337 29 100.0 32 ............................. ACGCGCGGCGTGCGCGGCTTCGCCGACGCCCT 398 29 86.2 0 ..............T......G..A...C | G [415] ========== ====== ====== ====== ============================= ================================ ================== 7 29 95.6 32 GTCGGCCCCGCGCCCGCGGGGATGTTCCG # Left flank : CCTCCACACCCTTGCATCTCGATCCGGCGGCAG # Right flank : CTGTGTGCAGCCAACAGCCGCACTCAGCACGACGCGCGCAACCGGCATACCTCACTGGGGACTTCCGTCTGAAGTAAGTCGTCTAGGCACCCCTGACACACAGACGCCCCCGCCCCCGCTTAGCAGCGGGCGGGCAGGGGCGCGGCGGCGTCCATGCCGTCAGATGTCGCGGAAGGTTTCGATCTGGGCGCCCACCGAGTTCAGGCGTTCGGCCAGGTCCTCGTAGCCGCGGTTGATCACGTACACGTTGCGCAGCACCGAGGTGCCCTCGGCCGCCATCATCGCCAGGAGGACGACCACCGCCGGGCGCAGGGCCGGGGGGCACATCATCTCGGCGGCGCGCCAGCGGGTGGTGCCTTCGACCAGGACGCGGTGCGGGTCCAGGAGCTGGAGGCGGCCGCCGAGGCGGTTGAGGTCGGTGAGGTAGATGGCGCGGTTGTCGTAGACCCAGTCGTGGATCAGGGTCGAGCCGTGGGCGGAGGCCGCGATCGCCGCGAAGA # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCCGCGGGGATGTTCCG # Alternate repeat : GTCGGCCCCGCGCCTGCGGGGATGTTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 15-349 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALNP01000016.1 Streptomyces sp. AA0539 contig00016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 15 29 93.1 32 ........................GC... AGCTCGTACAGGCGCTCCTGCGTCCAGCCGGA 76 29 96.6 32 ........................G.... AGCTCGTGCAGCGCCATGGTGGCCGGGTCTTC 137 29 89.7 33 ......G.................G...A CCTTGGGGCAGAGGCCCCGGCGGTTACCGGGAG 199 29 100.0 32 ............................. GTGGTCGATGTCCGGGCCTGGGACCAGTGGGA 260 29 93.1 32 ...................AA........ GCACCGGGGTGTTCACGCACGCGGAACGGTGG 321 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 6 29 95.4 32 GTGGTCCCCGCGCATGCGGGGGTGTTCCC # Left flank : TGCGCCGCATCGCCG # Right flank : CGCCGAGGCGGGCCTGGGAGCGCTACGGTCCTCCGTTGCGGCGCCTGCACGCGCGGATGTGAGCGGAGGGACGGTTCGACGTCCGGGCGCACCGGTTCCTGATCGTCGCCGAGCGGGCGGGCAGCGACGGCCGTCCCTGACACCCGTGCCGGTGCAGCGCGCCCGGTCGGCGCGAGGTGCCGGGTCCGTACGACTCCGGGCGGTGTGCCGCGCCGGGCGCGTGGACGGGCCGGCGCGCCGGGCGCGTACGGACCCGCGCGGGCGCGGGTGCCGCGCACCCGGCGGGTGGGCGGGTGCCCGCACGGCCCCCGGGCTCGCGCGGATGCCGCGCCCCCCGGCAGACCCCGGCAGGCCCCCGGCGGGCACGCCCGTACCCCGCGGACCCGCCCACGGACGGAGGGCCCCTACGGGGTCCAGCCGCCCAGCCACGTGGTCGGGGTGTGGGCCGCTGCCTGCTGGTCGGTCAGGTGCGGGCGGTTGGTGGTGGGCGGGGCGGAGCC # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCATGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGGTGTTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,1.05 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 92921-93195 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALNP01000022.1 Streptomyces sp. AA0539 contig00022, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 92921 29 100.0 34 ............................. TGCTGGCCCGCTGCCCGTGGCGGCGCGGGGGCGG 92984 29 100.0 32 ............................. GTGGTCGACGCCGACAAGCTCATGCGGATCTA 93045 29 100.0 32 ............................. ACGTCGACGACGTTCTGCTGCGCCCAGCGGCC 93106 29 100.0 32 ............................. ATCGAGACACTGAGTAATCAAATCGTCCGCCG 93167 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 5 29 100.0 33 GTGGTCCCCGCGCATGCGGGGGTGGTCCC # Left flank : AGCGCTCGGACGGGCCCGGCGGCGCGGGGGTGTGTACTACCGGGCCGACGAACTCCCGGCGCCGGTTCGACGGCAACTGCACCATGGCAGGCCCCGCCGGGGCGGGTCGCGCCACCCCCGGTGGAACCGGAGGAGCGGAACGGGGCTGCCCGACCGGTGCGCGCGGGCCATCATGGACTCCTGGCTTACGACAGCGGCGGCGAGAAAACAGAACACCAGGACCGGGCGACACACTTCACCGGATCCTGGATCTCCACATGGCGGACGCACGACGGAGAGGAGCCCAGTTGACCCACCGCCCGACACATCGGAGCGGGCATGCGCCGACTGCCCACGACAGGGCTGGACCACGGCGACGAAGCACCGCAGACGCGGAGCCGGCTGCGGTGATGTCCCATCTCCGGCAGGACCTACATGAGACCCCTATGCGAGCTATGCCGGACTCTCAACTAGTAAGTAAAAACCATGCCCCCAGGCGATAGAGTCGCAGCTCACGGCCT # Right flank : AGCGGCTCCCTCCACGCCGCCATGGACGAGGAGTGGTCCCCGCGCAT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCATGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCATGCGGGGGTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 15633-15116 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALNP01000043.1 Streptomyces sp. AA0539 contig00043, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 15632 28 100.0 33 ............................ CTCCGCTTTCGCCGTTGGCACGTAGTTGACATC 15571 28 100.0 33 ............................ CGTCCGTTGCGCCACGCTGTTCTCGGACGGGTC G [15554] 15509 28 100.0 33 ............................ GGCGGCCGTGCACGACACGTTCCTCGCGGCGGA 15448 28 100.0 33 ............................ CCGGGCGGCGCGACGGTCGGCGGACCGATCGGG 15387 28 100.0 33 ............................ GATCGACAAGGATGGCGAGGCGCGCGCGGAGAA 15326 28 100.0 28 ............................ GCGGGTCTTATGTGTTCGCGGGTTCGCG 15265 28 96.4 33 .....................A...... GATGTCGCGCGCCTTCGCCTTGCTGGTCGGCTG 15204 28 100.0 33 ............................ GCTAATCTCCCTGGTCTCCCTGGCCCGCGCCGC 15143 28 85.7 0 .....................AG.CA.. | ========== ====== ====== ====== ============================ ================================= ================== 9 28 98.0 32 GTCGGCCCCGCACCTGCGGGGGTGTTCC # Left flank : GGGGGTGTTCCGGCGTACGAGGAGCGGCACGGCGTGGCTCCGA # Right flank : TCGGCGCAGGCGAGGGATCGGGGCCGGCCCGCCGGTGTAGATCAGCGGTGTGCTGCGAAGTGGACGAAGGGAGCCCAGGCTTCTTGGCTGACTGTGAAGTGCGGGCGAGTGCTGTCCTTGGAGTCCCTGACGTGGATGGCCTGGTCGGCGATCGCGACTTCTACGCAGCTGTCGCCCTGGCTGCCGCTGTAGGTGGACTTGAACCAGGCGAGTTCCGTACCACCGCTCATAGCTCTCCTCGCAGTCGTTCCAGCAGGTCCCGGGATGCGTTGGGGCTCAGGGCCTGCGAGCGCAGTGTTTCATAGCGCTGGCAGAGCAGACTCATCTCTTTTGCGTCGGAGATGAGACGTCCGTTTTCCTGTCCCTCTGAGTAGCCGAGTCGGCGGCCTTCCGGGGTTTCCAGAACCTGCAACGGTCCGTCCAGGCACGCGTGGAGGGCTCCGTCGAGCGGCACCAACTGGAGGCTCACGTTGCGCGGGGCGCTGCGTTCCAGCACGTGG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCTGCGGGGGTGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-18.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 20660-21134 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALNP01000006.1 Streptomyces sp. AA0539 contig00006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 20660 37 100.0 36 ..................................... ACCAGCCGAGCCGCGGCCGGCGCCGGTGACCAGGGA 20733 37 100.0 36 ..................................... ACCGACCGGTCCGGCCGGGCGTGGCAGATGACCAGC 20806 37 100.0 35 ..................................... TTCTTTCGCTGGTGCAGCTCCTGGATGGCCTGCCT 20878 37 100.0 36 ..................................... ACGAGCCCGCGAGACCGAGAGGACCAGGTCGTCATT 20951 37 100.0 36 ..................................... CTCATCAGGGGGTGTCCGCTGCGGCGGTGGGGTCGG 21024 37 100.0 37 ..................................... TTGTTGGGCGGGTTCAGCTTGGTGTGGCCGGGCTGGA 21098 37 94.6 0 .........G..................C........ | ========== ====== ====== ====== ===================================== ===================================== ================== 7 37 99.2 36 GTGGCGACCACCCTCCGGGGCGGTCGAGGATCGCAAC # Left flank : CCGGCCCGCGCCGCACCCGGCTGCTGGACGGCCTGTACGTCTGCGGCGACCACCGCGGCGCGGACGACCTGACGACGGCGGCCACGGCGGTCACAGCCCTCCTCCAGGACTTCGGGCGCCCGGCGACGACGGAACCCCACACGAGCGCGGCGGCGTAGCGGCGTGCCGGGGCCCTTCCCGGGCGCGGGCCCGCCGGTCGGACGCCCGGGCGCCGGTGGGCCGGGGGCGGGTTGTGGACTCGGGCCCGGACCACTCGTAAGGGCGTTCGGGCCTGCCACCTGCCTCACCACGACTTGGCGACGGTGCAGCCCTGTGGCACCGCTCGGCTACAGTCACCCTGGGACGCCCTGATCGCCCGCCACCCGCGCCGACTTCGGAACCCCAAGTGGACACGCGACACGCGGATCGCACCGAAGCAGAATGACGGAAATGACCAGAATGACCGTGCGGCTCGCTGCCCGGCAGACCAGCCGCCGGAAAGAAACCGCAGGTCAGATACC # Right flank : CGGCCTCCAGGGCTCGGACCTCCGGAACTGGGCTTGGTGGCGGCTGCCCTCGGGGGATTGAATCGAACGAGTCGATACGGAGCCGGGGCGCGGGTACAGCCGCCCCGCCCCGGCCCGCACGCCGCGCCCGGGCGGCGCGGCGCCAACCGGCCGCGCCCGTGCGGCCGCGTGCCGGGTCGTCGGCCTTCGCCCGGGAAGGGCTCAGTTCAGGGCCGCCACCTTCTCCCGGTAGCCGCGGACCGCCAGTGAGTCGCGGTACGGGTCCAGGCGGCGTTCGAAGTCCTGGAGGTATTCGTGGGCCCGTGCCGAGCGCATGTCGGCCGCCTGCTGGGCCGCCTCCACCGCCAGCGCGCACGCGTGGTCCACGTCGCCGAGTCCCAGCTTCGCCGTGGCCAGCACCACCCGGCAGAACAGCCGGCTGCGCGCGTAGCCGTTGCCGCGCAGTTGCAGTGACCGTTCCGCGTACCGGGCCGCGGTCCGGTACTGCTGGAGGTCGCGGT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGACCACCCTCCGGGGCGGTCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.60,-14.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 441-47 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALNP01000045.1 Streptomyces sp. AA0539 contig00045, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 440 28 100.0 33 ............................ GCGGCGCACCGGCCGCGTGATCGGCTGGAGGTG 379 28 100.0 33 ............................ CTACTTGTGCAGCACCGCCTAAGTGTGTCAGAC 318 28 100.0 33 ............................ GCCGTGGCGCGGTACAGCACCGACGCCGCCCGC 257 28 100.0 33 ............................ GCGGAGGTTGTGACCATGTGAACGCCCCCGGCG 196 28 96.4 33 ......................T..... CTCCGACTCGGGGAACGACCCCCGGCGCTAAGG 135 28 96.4 33 ......................T..... GCAGGGTGGCCCACCCCAGGGCCGGGGCGGGCC 74 28 96.4 0 ......................T..... | ========== ====== ====== ====== ============================ ================================= ================== 7 28 98.5 33 GTCGGCCCCGCGCCCGCGGGGAGGTTCC # Left flank : CGTCCGGTGTGAACTGGGCGGACGACCGGGACAGCCCCGCGGAGGCGGCGTTCCCCGGGCCGGAAACCGCCTCCCGCCCGGCCTCCATGGGCGACCAGCACATCGCCGTCATCGGCCCCGAGTTCGAGGAACCCGACAGCGACCAGAGGACGTCCGGATGACCGTCATCGTGCTCATCGCCGCCCCGGAAGGACTGCGTGGCCACCTCACGCGCTGGATGGTGGAGGTCAACGCGGGCGTCTTCGTCGGCAACCCGAACCGCCGGGTCCGGGACCGTCTGTGGGACCTCCTGGCCACGCGCATCGGCGACGGCCAGGCCGTGCTCGTGGAACCCGCGGCCAACGAACAGGGCTGGGCCGTCCGCACCGCCGGCCGCGACCGCTGGCGTCCGGTGGACTTCGACGGTCTGATCCTCTCGGCACGGAACAGGAGGTGAGCCAGTGCCGACGCAACTGAATGAAAACGGAGCCCTGGCACGATAAAACCCCAGCTCAAAAAGG # Right flank : CGATCGACGGTGGAGCTGGTGAGCGTCCGCGTCTGTCGGCCCCCGCG # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCCGCGGGGAGGTTCC # Alternate repeat : GTCGGCCCCGCGCCCGCGGGGATGTTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [0-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 10521-10854 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALNP01000045.1 Streptomyces sp. AA0539 contig00045, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10521 28 100.0 33 ............................ GACGTCGGACATCATGTCGGCCCTGCCGGACGT 10582 28 100.0 33 ............................ TGGTCCAACGAGGTCATCAAGGAGATGACCCAC 10643 28 100.0 33 ............................ CTCGGGGTGACCGGTGTCCCCGGCCGCCGTCGC 10704 28 100.0 33 ............................ CTCGGGGTGACCGGTGTCCCCGGCCGCCGTCGC 10765 28 100.0 33 ............................ GCGCACGCGCCGCCACATCGAGTCAAAGGGATG G [10787] 10827 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 6 28 100.0 33 GTCGGCCCCGCACCTGCGGGGGTGTTCC # Left flank : ACCGCCTCGGCGCCCTCCGGCCACATCCGCTGGAAGGCGGGGGTGGCCTTGCCATAGTCGTGGACGCCGCAGAGCCAGGAGAAGAACCGCCGCCCCTTGCCCGGCCCGCCCGCGATGTCGTCCACGACCAGCCGGGTGGAGGGGGCCAGGAAGCCGTCCCACAGGCGTTCGGCCACGGCAGCGGTATCGAGGAGATGTGAGAGCAGCACGTTCTTCCTGCCACCGGCCTTCCCGGCCGACTTCCCCCACAGGGCCGCCACCACCTGCTCCCCACAGGCCGGCGCCCCGCCCTGACCATCACTCAATGTGCCACCCCTGGTACAACTGGTAGGTACTTCTTGGGGTGCAGACCTTAGAGCAAGGCACTGACAATCGACGGGGAATGCGGCGGAGCGGGGTCGGTTCGGCAGTGCCGCCGGATACGCAAGGCTGAGGGAGGATCCGCGAACGTACCGAATGAAAACCGGCCTCCGGCCCGGTAAACGAGCAGGTCAAGAAGT # Right flank : CCCAGGTCACGGCGGCTCCTTTCGTGCGGGCCCCCGTCGGC # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCTGCGGGGGTGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 128244-128516 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALNP01000007.1 Streptomyces sp. AA0539 contig00007, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 128244 28 100.0 33 ............................ CGGAGGCCGGGGGTCCGGCCGGCCCTGCGGGAG 128305 28 96.4 33 ......T..................... CTGCAGGCTGCGCGTCATCACGATGTTCAGCCG 128366 28 100.0 33 ............................ GTACAGCCCCGCACAGGAGCGGGCCATGGTCGC 128427 28 92.9 33 ....C..............A........ CGCGACCTGGACGTCTCCGCGGCCATCCACGCG 128488 28 92.9 0 .............A...........C.. | T [128512] ========== ====== ====== ====== ============================ ================================= ================== 5 28 96.4 33 CTGCTCCCCGCACGCGCGGGGTTGGTCC # Left flank : CGAGGTACGCACCTCACCCCTGTCGCGGGCGAAGGAAACCTGCGAGCTGGCCGGATTCGGCGACCGGGCGAGCGACTGGGACGCGCTGAAGGAGTGGGACTACGGCGACGCCGAGGGCCGCACCGGCGAGCAGATGCAGCAGGACCGGGGCGGCGAGTGGGTGCTGTGGCGCGACGGCGTACGCGGCGGCGAGAGCTTCGCGGAGCTGTCCGCACGCGCGGACGAGGTGGTGGCCTGGGCCCGCGAGGCGGGAGACGGGGCGGTGCTGTTCGCGCACGGCCACATTCTCCGCTCGGTGACGGCCCGCTGGCTGGGCGAGGACGTCCGCTTCGCCGCCCGCCTGAAACTGGACCCGGCCTCACTGTCGGAACTGAGCTGGGCCCACGGCAAGCCGGTGATCGCGCGCTGGAACGACACGTCACACCTGGAGGGGCGGACGGGCGCTGAGTAAAGTGCGTAAAGACGGCCTGACCGAGGGATAACGGCCCAGGTCAGAAAGC # Right flank : CATCGGCTTCACGCCGCAACTGCGCCCCGCCCGGCAGGGCTACGCCGCTCGCGCCGCGAACGCCGCCACCTCCGGAGCGTGGGTGTGCGCGGTCAGGCGGTTCGCCGTGTGGCGGAGGAGGGTGCGGATGCGGGAGGAGTGGACCTCTTCCAGGAGGTCCAGGGCCTGCTGGCCCGTCTCCGCCGCTTCTTCCGGGTGGCCGCCTGCTCGCAGGTGGTCGGCGAGTTCGGCGGTGTACAGGGCGCGGTTGCGGACCAGGTGCGGGTCCTGGGTGGTGAGGGCGCGGCGGGCCGCTTCGGAGGCGCGGTGCCAGTCGCCGAGCGCCGCCCAGCAGTGCGCTTCCTGGCTGGCGAGTTCGGCGGCGTTGAAGAAGCTCATCCAGTCCGGGTCGGCGTCGTCCGGGCCGTGGGCGAAGGCCGTCTGGGCGCGGGAGAGGGCCAGTTCGCAGCCCTTGCGGTCGCCGAGGCCGGCCCAGCCGGCGGCCTCGCGCAGGGCGAGCA # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGTTGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACACGCGGGGTTGGTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 255-43 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALNP01000010.1 Streptomyces sp. AA0539 contig00010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 254 29 100.0 32 ............................. ATCCCGACCCACATCTCTACGGCGATGATGGC 193 29 100.0 32 ............................. CTCTGGACGGGCTGGCCGCCGCCGCGGTGGAG 132 29 100.0 32 ............................. CCCCTGACCTGCACAAACGCCCGGATGCTGCG 71 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTCCTCCCCGCAGGCGCGGGGGTGTTCCG # Left flank : GCGTCGGGGGCGAAACCGGTGGGCCCCGCGTCAGGTGGCGCGGCACCCGATCACCCCGGGCGGAGCGATGGTGGATCATCCGCGAGAGCATCAGCCCAGCGCACGGCCACTACCGCACGGACGTGCGGCCAGGGCAGATGCGCGCTACGCGGACCCCCACCCACGAACCGTCCCAAGACCACCCGTCAGTCCCTGCGCCGCGCAGGCGGAACCCGCATCCGCACGAGCACCCGCCTCGGTCACGACGGCGGGGCCACCCACCACCCCACCCCTCCCGCCGCTGCCTTGTCGTAACCCCAACCCCGCAAGCACGTACAGGGCATGGGGACACGAAACAACAACCCCCCACCCTCCCGCGCCGCATGAACCCGCACCCACCCACCCCACCAGGAGCAACCTCGGACGCAACAGGCGTGCCACCCGCTACCCTTCAACCGATGCACCACAGTGAGTCAGCAAAGGAATGGCAAAGCCCTCGCTAAACCCCAGCTCAAAAAAGG # Right flank : GCGCGAGTACCCCGAAGTTCGCCGACTGCTACAGTCCTCCCCG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCAGGCGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGCCGCGGGGGTGTTCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-13.10,-13.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17-476 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALNP01000009.1 Streptomyces sp. AA0539 contig00009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================================================= ================== 17 28 96.4 32 .................A.......... GTCCATGGCCTTGCTGGTCCGGCCGCCATGCT 78 28 100.0 32 ............................ CTCACGCGGAGGCGGCGCTGGAGGGCGCCGGC 139 28 96.4 31 ...........................G GGCGCGGTACGGCGGGCGGTGACCGTGCCGG A,G [150,161] 201 28 96.4 32 ...........................G GCGGCGCTCATCGCCTTGTTGGTGGCCTTGTC 261 28 96.4 32 .....T...................... CCGGTCATCTCTTCCTCGGCCTTGGGGAGGGG 322 28 85.7 97 ......................ACC.G. TTCTCGCTTCCGGCCGCCGGGCCGCGGCCCAGCCCGGTTGGGGCAGGGCCTGGGCCCTGCCCCAACCGGGCGCGCCGCCGCCCGGCGCCCCGCCGCG A [333] 449 28 64.3 0 .A..G......C.......C.CCCCG.T | ========== ====== ====== ====== ============================ ================================================================================================= ================== 7 28 90.8 43 GTCCTCCCCGCGGCGCGGGGGTGTTCCC # Left flank : TGAGGAGCCCGGGCCCG # Right flank : TGCCGGGCGGAGCCCTGCCTCACGCCCAGGGGCGTTCGCGGACGTGGAGGGCGCGGCGGAGGTCGTCTGTTTCGTCGGTCAGTTTGCGGTGGAGTGCCGGTGGCAGGGGTTCCCGCAGGGCCGCTTCCGCGAGGGTGAGGGTGGTGTGGTCCGTGAAGGGGTGGGGGAAGGCGTGGCGTGCCGTGGCTACTGCCAGGGCGTGGCCTCGGCGGGTGGCGACGGCGGCGGCTGCCGGGAAGTAGCGTTCGACGTAGGGGCGCAGCAGGTCGCGTTGGCGTTCTTCCGGTTGCCAGAAGCCTTGGGCCGTGGCGGTGAAGAGGTAGTTGGAGAGGGTGTCGGCGGGGTCGAAGAGGGCGTGCCAGGCGGTGGCTTTGGCTTGGGGGTCGGGGAGGGCGGCCAGGCAGCGGGCGGCTCCTTCTTCGCCTTTCGCGCTGGGGTCGCGTTCGGCTTCGGCGCGGATTTCGGTTTCGTCGGTGGCGCCGAGGGTGGCGAGCCGGTAG # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:-1.5, 6:0.25, 7:-0.97, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGGCGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGCCGCGGGGGTGTTCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //