Array 1 164265-161063 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWMV01000070.1 Salmonella enterica subsp. enterica serovar Weltevreden strain CNGD2015007 scaffold6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 164264 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 164203 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 164142 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 164081 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 164020 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 163959 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 163898 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 163837 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 163776 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 163715 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 163654 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 163593 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 163532 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 163471 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 163410 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 163349 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 163288 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 163227 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 163166 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 163105 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 163044 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 162983 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 162922 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 162861 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 162800 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCT 162739 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 162678 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 162617 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 162556 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 162495 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 162434 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 162373 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 162312 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 162251 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 162190 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 162129 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 162068 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 162007 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161946 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 161885 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 161824 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161763 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161702 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161641 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161580 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 161519 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 161458 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 161397 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161336 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161275 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 161214 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 161153 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 161092 29 93.1 0 A...........T................ | A [161065] ========== ====== ====== ====== ============================= ================================ ================== 53 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 183181-180772 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWMV01000070.1 Salmonella enterica subsp. enterica serovar Weltevreden strain CNGD2015007 scaffold6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 183180 29 100.0 32 ............................. CTTACGCAGCCGGGCACAATATCTACCTCCTA 183119 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 183058 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 182997 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 182936 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 182875 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 182814 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 182753 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 182692 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 182631 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 182570 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 182509 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 182448 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 182387 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 182326 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 182265 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 182204 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 182143 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 182082 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 182021 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 181960 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 181899 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 181838 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 181777 29 100.0 32 ............................. CTGAGTAGCGATCGCCCCAATCCAAATTTGAT 181716 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 181655 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 181594 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 181532 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 181471 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 181410 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 181349 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 181288 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 181226 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 181165 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 181104 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 181043 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 180982 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 180921 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 180860 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 180799 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 40 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //