Array 1 51-1099 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYIH01000018.1 Salmonella enterica strain BCW_5859 NODE_18_length_107377_cov_3.83932, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 51 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 112 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 173 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 234 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 295 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 356 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 418 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 521 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 582 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 643 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 704 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 765 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 826 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 887 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 948 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 1009 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1070 29 96.6 0 A............................ | A [1096] ========== ====== ====== ====== ============================= ========================================================================== ================== 17 29 99.6 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCCAGCGGGGATAAACCGACGCCCCGAATGTGTTTGCCTCGCCCGCTGCCG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.16, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 805-43 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYIH01000027.1 Salmonella enterica strain BCW_5859 NODE_27_length_80268_cov_3.78593, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 804 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 743 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 682 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 621 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 560 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 499 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 438 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 376 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 315 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 254 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 193 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 132 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 71 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GACGCCCCGAATGTGTTTGCCTCGCCCGCTGCCGTGTTCCCCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 18429-16936 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYIH01000027.1 Salmonella enterica strain BCW_5859 NODE_27_length_80268_cov_3.78593, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 18428 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 18367 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 18306 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 18245 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 18184 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 18123 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 18062 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 18001 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 17940 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 17879 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 17818 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 17757 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 17696 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 17635 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 17574 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 17513 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 17451 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 17390 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 17329 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 17268 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 17207 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 17146 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 17085 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 17024 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 16963 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //