Array 1 27410-26586 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZAX01000003.1 Salmonella enterica subsp. enterica serovar Alachua strain 08-1229 NODE_3_length_467238_cov_0.518122, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 27409 29 100.0 32 ............................. ACGAGTCGCAGGAGGGCGAAACCATATTATCC 27348 29 100.0 32 ............................. ACCCATATCAACGCACCGAAATTACGGACGGC 27287 29 100.0 32 ............................. ACGACTGAATTAAAACCATACGGCGGCTCATA 27226 29 100.0 32 ............................. ACGGGGAGTCAGTCACATCCATTGAGGATGCG 27165 29 100.0 32 ............................. CCTCCAGGATACCCCCACCGATGAAGGTGGGG 27104 29 100.0 32 ............................. CAGTATTTCGGTATGGCTAGCCACAGCGCGAA 27043 29 100.0 32 ............................. AAATCATTCATCATCGCGATAGCGATCGAATC 26982 29 100.0 32 ............................. GCGTTGGCGTCGCCCAACACCATCGCCGGGGC 26921 29 100.0 32 ............................. AATGCTTTGGCAAAATCAATTCCCCCAATTGA 26860 29 100.0 32 ............................. TCCGGGCGTACAGATATCATGAGTTCTGACGA 26799 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 26738 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC 26676 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 26615 29 96.6 0 A............................ | A [26588] ========== ====== ====== ====== ============================= ================================= ================== 14 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTACCGCCAGCGATACCAGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTGGAGATTCGTGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGTATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGCGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 45282-43668 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZAX01000003.1 Salmonella enterica subsp. enterica serovar Alachua strain 08-1229 NODE_3_length_467238_cov_0.518122, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 45281 29 96.6 32 ............................A TTACCGTATGACAAGCGGGTAAAAAAAAGCCC 45220 29 100.0 32 ............................. AAAACATGCATATGGGCTGGTAACGGCTTTGT 45159 29 100.0 32 ............................. TCGTGACCATGAATAATGACGTCATCACCGCG 45098 29 100.0 32 ............................. TGCACATTATTTCAGGGCGAAATCTCGTCCGC 45037 29 100.0 31 ............................. TGCTGGCGCATCATGTAAAATCGCGTGCCAA 44976 29 100.0 32 ............................. TCGGTTATTGAGGACGTCACCGACGACGCACT 44915 29 100.0 32 ............................. ACATTGAACCTCCTCAATAGGGCAGGTCGTTC 44854 29 100.0 32 ............................. GAACGACGACCAGATTAACGCCGGTCTGGAAA 44793 29 100.0 32 ............................. GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 44732 29 100.0 32 ............................. GCGCGGCATAACAGCACGGGCACGCCGCCAGG 44671 29 96.6 32 .................A........... ATAAATTATCGGGAAATCATAATCAGCGCCGC 44610 29 100.0 32 ............................. TCGAGTTCTGGCATGTCAGACTGACGTATCGC 44549 29 100.0 32 ............................. CCATTTTTGATCATCTCCTCCAGCCTGCTGAG 44488 29 96.6 32 .............T............... GCGCAGTATCAGGGAACGGCCGTTATTACGGT 44427 29 100.0 32 ............................. GCAATGGCAAGTAGTTCTCAGATGAAAGTCAG 44366 29 100.0 32 ............................. CCAACGGACGAGATCCTGGACTGCGACGGGCT 44305 29 100.0 32 ............................. GAAAGATTCACATTTAAAACTAGTGATTTTTC 44244 29 100.0 32 ............................. CGGGCGTTAACGTCCGAAGAGGTTCGCGAAAC 44183 29 100.0 32 ............................. TCTGGTGATTTGAAAGACTGGCACGCAGAGGA 44122 29 100.0 32 ............................. AAGATACAAAAAAGTACACGTAAAGTGCACGT 44061 29 100.0 32 ............................. CCATAAGAGCATCCCCGCCATCCGGAGGGGAA 44000 29 100.0 32 ............................. AAAAAAATGCGATCGGTACTCAACCCGGCCAC 43939 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 43878 29 100.0 32 ............................. TGGTCGCAGCCTGGCCTGTTGCCGTAGAATCG 43817 29 96.6 32 .........T................... AGTTACTGATGCAGACTGCGGATCTTAATCGG 43756 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 43695 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCTAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //