Array 1 277027-279174 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUVT01000016.1 Streptococcus agalactiae SGBS004 ctg7180000000721, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 277027 36 100.0 30 .................................... AAAAGAATAAGTATATGTTCTCATCTCAGA 277093 36 100.0 30 .................................... ACATATTCAGGACTTTATAATCATTTTGTT 277159 36 100.0 30 .................................... AAGATACTGACTGGGAATATTATGATGAAG 277225 36 100.0 30 .................................... TTGGTCTTTTGGTACAAATTATTCAAATGT 277291 36 100.0 30 .................................... AGAAGAAGATGCACAATCTTTACAAGATTT 277357 36 100.0 30 .................................... AATCTATTGTTTCTGTTGGTTATCAAAACA 277423 36 100.0 30 .................................... ATAATTTACTCTGTATAGAGTTATACAGAG 277489 36 100.0 30 .................................... TCCTTAATTTGCCGTTCATACGACACAGAG 277555 36 100.0 30 .................................... AGACTTAGATTCTATTCAAGACATGGTTTT 277621 36 100.0 30 .................................... AACATTAGCCTTTTCTAACTCTTCAGCTGT 277687 36 100.0 30 .................................... TATGTCTTCTAACAGTTGCTTCTTGTGCTT 277753 36 100.0 30 .................................... CCGTCAAACAAGAGCGACAGCGAAACAAGC 277819 36 100.0 30 .................................... TTTTATTGGTTTTCTAAGTGCTCGACCATC 277885 36 100.0 30 .................................... AGTTACTTCTGCTTGGGTTTGATAAGGGTC 277951 36 100.0 30 .................................... GAAATGTGGAGTCATTCAGGTTGATGATGG 278017 36 100.0 30 .................................... AAAAAATAAATGACTTTAAAGCACTTGGAG 278083 36 100.0 30 .................................... TAGTAGCCATTATTATTATGGCTTTTATTT 278149 36 100.0 30 .................................... GGATGATTTCGATTATGCGGCGGTGGTTGA 278215 36 100.0 30 .................................... AAATGTTAATTTCATATCTACATCTTGTTC 278281 36 100.0 30 .................................... ACATAACGTTCAAAAGTTTCCACTAATAGC 278347 36 100.0 30 .................................... TCAAACAACATTGGTGATCTTATTGCGGTA 278413 36 100.0 30 .................................... TTATTTAAGACGTGATTTAATGTTAAAACT 278479 36 100.0 30 .................................... CAAACTATCTTGATTATAAGTGGACTGATA 278545 36 100.0 30 .................................... ATTTTTACACGAGTGCTAGAAAACGGGGCA 278611 36 100.0 30 .................................... ACATTTGTTAAATTTGAACTTACTGGAAAT 278677 36 100.0 30 .................................... TCCAAAACAAATACGAATGCTTGAGCGATA 278743 36 100.0 30 .................................... GATTACCTTAGATGATGTTCTAATCGGTAA 278809 36 100.0 30 .................................... TTAACAGTTTCAAGTCTGTCTTGTTACTTA 278875 36 100.0 30 .................................... ACTCTAAATGATAGTTATGAGTTAAATGTT 278941 36 100.0 30 .................................... CAAATTACAGTTTCGACTGATTATGGAAAT 279007 36 100.0 30 .................................... ATATGTTCCACTCTATGAATTTAGGCTCAT 279073 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 279139 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 33 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : CAAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //